GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2022-09-25 16:27:35, GGRNA : RefSeq release 212 (May, 2022)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Caenorhabditis remanei CRE-TAG-80 protein (Cre-tag-80) mRNA, complete cds. (21927 bp)
gaaacgtataatgaagtgccctgttgttcaaccgaagacgaagaaaccagaaagatacatgaaaccgccaagattctcgtgcaagaaactatggaacaactgatttatgacagtccaacagaatttgaaaaacgagtaaacacgccagaacatcatgaagcagacagatccagtgcaacatcaggagctgactttgagaaatccttggatcaagaagtcgcttatgatcgatcttcacctttcttggaacctgtcgaagagccgattttcgaaaagaaagaaccggaactgactcaagaagagattgatcacatcgcttggattcaaagtctagctgagcggtcatcattcgaacaagcagcacctccgacacatccaccagttcctcaaagaatggcaacagttgaagaaccaattgctacgaccgatcttcatgaagaggacagatccagtgcaacatcgggagctcactttgagaaatcattcgaccaagaagtcgcatacgaacgatcttcacctttgttggaatctgtcgaagagccgattttcgaaaagaaagaacctgaactgactcaagaagagattgatcacatcgcttgg...
position 1867
XM_003107901.1 - Caenorhabditis remanei - NCBI
Caenorhabditis elegans Protein clarinet (cla-1), partial mRNA. (25584 bp)
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
NM_001307220.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Protein clarinet (cla-1), partial mRNA. (27002 bp)
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
NM_001307219.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Unclassified non-coding RNA ZK1193.9 (ZK1193.9), ncRNA. (133 bp)
AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA gaaggcgaccacgtcgtcgccaagaagagattgaagacgacgaatggagcgaaagtagtaaggaggggttgagggggggggaggtcgggatcgagatggcataatgtaggaaccggatggaagagtctaaaag
position 21
NR_070329.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis remanei hypothetical protein (CRE_18336) mRNA, partial cds. (2351 bp)
cttggaaggataaacgaagaacatgaacatgacgatgaagatgacgaagttcagaccgagagtagctcagacagcatgataatgcatgagaactcttccgagccaataatgcaattgaatgtcgaagaatacatccaaacaatgattgaaaaactgagcagtcatcattcgatacatgaagcaccaagattctcgtgcaagaaactatggtccaccttcgcttatgatcgatcttcacctttgttggaacctgtcgaagagccgattttcgaaaagaaagaaccggaactgactcaagaagagattgatcacatcgtttggattcaaagtctagctgagcagtcatcattcgaacaagcagcacctccgactcgtccaccagttcctcaaagaatggcaacagttgaagaaccaattgctacgaccgatcttcatgaagaggacagatccagtgcaacatcaggagctgacatcgaacaatccttggatcaagaagtcgcttatgatcgatcttcacctttgttggaacctgtcgaagagccgattttcgaaaagaaagaaccggaactgactcaagaagagattgatcacatcgtttgg...
position 1624
XM_003089063.1 - Caenorhabditis remanei - NCBI
PREDICTED: Gossypium hirsutum calcium load-activated calcium channel (LOC107891247), mRNA. (1188 bp)
misc_feature 420..899 /gene="LOC107891247" /note="Integral membrane protein DUF106; Region: DUF106; pfam01956" /db_xref="CDD:396507" ORIGIN // gggattataggaggtgtgtttttctgggaacatatctttggagttgaatgctaacaagaagagattgaagttagtctatttaagttgaatgctaacaagaagagattgaagttagtctatttaagtgaatgcttcaagttgaactccgcaaattgtgaaagaaagaggtttcttgagttcatccttttcatttgtaggttgtatcgtttaataatagagataagagatgggttgaaatgagtaagcccatagtggtgagaaataaaaggcaaagcccactccttgggttgtcgtctacttgggattcgaatcaatttgactaggaacggatcacagagactgagagtgaagacacccacccaatcaaccttgtgaaaatggcgacaccccaattcctatcatccttccagtactccgacagtctaacagtcgtagctatctccttttgcactgccat...
position 55
XM_016815976.2 - Gossypium hirsutum (cotton) - NCBI
PREDICTED: Dioscorea cayenensis subsp. rotundata uncharacterized LOC120275457 (LOC120275457), ncRNA. (148 bp)
samples with support for all annotated introns" /db_xref="GeneID:120275457" ncRNA 1..148 /ncRNA_class="lncRNA" /gene="LOC120275457" /product="uncharacterized LOC120275457" /db_xref="GeneID:120275457" ORIGIN // tgaaacccaaatcatgttttatgtttatggttgtagtaatgttcttcgtcatgtataagttgacaaaattccaacaggcacaagaagagattgaatcagtatctcagacttttgattccatgatgaggaggacaccaaagaagctgta
position 81
XR_005541109.1 - Dioscorea cayenensis subsp. rotundata (Guinea yam) - NCBI
PREDICTED: Helianthus annuus uncharacterized LOC110938512 (LOC110938512), ncRNA. (219 bp)
ncRNA 1..219 /ncRNA_class="lncRNA" /gene="LOC110938512" /product="uncharacterized LOC110938512" /db_xref="GeneID:110938512" ORIGIN // ctcaagtacggcgtgcaacaagtgcctacccacgtcgtcaaagaactcatcatgcacgaggtggtgcttgggggtggccaggatgcatctgctgttaccacaaccatcatcgtgcggggaagtttgaagccaaattttatgacaaggttctgcaagaagagattggaggcgttaaaggacatttcgggccaattaatgctttggcattcaacccggatg
position 153
XR_002591448.2 - Helianthus annuus (common sunflower) - NCBI
PREDICTED: Pseudonaja textilis uncharacterized LOC113437314 (LOC113437314), ncRNA. (153 bp)
including 1 sample with support for all annotated introns" /db_xref="GeneID:113437314" ncRNA 1..153 /ncRNA_class="lncRNA" /gene="LOC113437314" /product="uncharacterized LOC113437314" /db_xref="GeneID:113437314" ORIGIN // acaatcatccaatggaacagcttgccatcagaagctgtgagtacttcatcacttgagactttcaagaagagattggactgtcatttttcagaaatggtgtaggtctcctgcttgggcaggggtttggactagattacctacaaggtcttttcc
position 63
XR_003374214.1 - Pseudonaja textilis - NCBI
Rhizoctonia solani ribosomal protein S30 (RhiXN_09607), partial mRNA. (192 bp)
AUTHORS Li,C. and Chen,X. TITLE Direct Submission JOURNAL Submitted (18-MAY-2020) Department of Plant Pathology, China Agricultural University, Yuanmingyuan Xilu 2, Beijing 100193, China atgggaaaagtccacggctcgctcgcccgcgcaggcaaagtcaaatctcaaactcccaaagtggagaaacaggagaagaagaagactcctaaaggtcgtgccaagaagagattgttgtacactcgtcgtttcgtgaatgttacgacgcttccaggcggaaagaggcgcatgaaccccaaccccgagaagtaa
position 102
XM_043329423.1 - Rhizoctonia solani - NCBI
PREDICTED: Trematomus bernacchii all-trans-retinol 13,14-reductase-like (LOC117496684), mRNA. (1486 bp)
gtccgggccatagagatcaaatgtgtctgtacgctgctcaatatcctcttcattggtctatttcatatcatttcaggtgtccctcctaaagagtccagctttctgatcaatgctctccttcttcaacactacaagcgtggtgcctactactcacaggggggcgccagtgagtttgccttccacatcatcaatgtcattgagaaggcgggcggtgctgttctcgtcagggctccggtacaccgcgtcctgctcaaccggcagaacaaggcctatggtgtgacggtgctcaaaggacaagaagagattgaggtccatgcccctgttgtcatttctaatgctggcattttcaacatattcgagaagtttctacctcagcccatacaggagaaaccaggtgtccctcctaaagagtccagctttctgatcaatgctctccttcttcaacactacaagcgtggtgcgtactactcacggggggcgccagtgtgtttgccttccacatcatcaatgtcattgagaaggcgggcggtgctgttctcgtcagggctccggtacaccgcgtcctgctcaaccggcagaacaaggcctatggtgggaaaa...
position 370
XM_034148409.1 - Trematomus bernacchii (emerald rockcod) - NCBI
PREDICTED: Cricetulus griseus uncharacterized LOC103163642 (LOC103163642), ncRNA. (277 bp)
product="uncharacterized LOC103163642" /db_xref="GeneID:103163642" ORIGIN // tatagactgctgcatgctggctggctaggttgctctttttaacttagaaagttgaggaaacaacaaagtagaggatgaatggtatctggaggttgacatactgatactcggggaaggtacagatgtgaatttcagcatgaagaaaggaagatattttctgttgttcaaggatgagacataccatatgagagggagccactataggtccaagaagagattgggaccatggagatttccagagacctacaaggatgacatgatctcataatcaaggcaa
position 208
XR_003480888.2 - Cricetulus griseus (Chinese hamster) - NCBI
Diutina rugosa uncharacterized protein (DIURU_003940), partial mRNA. (300 bp)
for Genomic Regulation, Carrer Dr. Aiguader, 88, 5, Barcelona 08003, Spain atggctaagtctggtattgctgttggtctcaacaagggtcacaagactaccgctaaggaagtcgcccccaagatctcgtacagaaagggtgccctcaccaagagaaccgagttcgtcagatcgatcgtgtcggaagtcgccgggttggctccttacgaaagaagattgatcgaattgatcagaaacgccggtgaaaagagagccaagaagttggccaagaagagattgggtacccacaagagagccttgaagaaggttgaagagatgaacggtgtcatcgctgcttccagaaagcactaa
position 216
XM_034156758.1 - Diutina rugosa - NCBI
PREDICTED: Gorilla gorilla gorilla uncharacterized LOC115931024 (LOC115931024), ncRNA. (277 bp)
including 1 sample with support for all annotated introns" /db_xref="GeneID:115931024" ncRNA 1..277 /ncRNA_class="lncRNA" /gene="LOC115931024" /product="uncharacterized LOC115931024" /db_xref="GeneID:115931024" ORIGIN // ggcagctgttggagagggatgggtcaagggatggagggtagcactgtgagctgaaataggaggcaagaagagattgaagggaaatctcaaggggctccagagactactacaatggtgcaaagtcacagaagccctgggaaaagcaggtagaatggagttgccatgacactgagcctcatctagatgccagttccagatattggcagactgctggcctcctgaggagcacaggaaggggcctggcagactggtgatcctggttggacatgaagagggg
position 64
XR_004067606.1 - Gorilla gorilla gorilla (western lowland gorilla) - NCBI
Saccharomyces paradoxus Gyp5 (SPAR_P00270), partial mRNA. (303 bp)
and Aging, Nice (IRCAN), 28 Avenue de Valombrose, Nice, PACA 06107, France atggctgtcaagactggtatcgctattggtttgaacaagggtaagaaagtcacccaaatgactccagctccaaagatctcctacaagaagggtgctgcctctaacagaaccaagttcgtcagatctttggttagagaaatcgccggtttgtccccatacgaaagaagattgatcgatttgatcagaaactccggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcaccagagccaaggctaaggtcgaagaaatgaacaacatcattgctgcctctcgtcgtcattaa
position 219
XM_033913633.1 - Saccharomyces paradoxus - NCBI
Polysphondylium pallidum PN500 40S ribosomal protein S30 (rps30-2), partial mRNA. (198 bp)
G., Schaap,P., Noegel,A.A., Felder,M. and Platzer,M. TITLE Direct Submission JOURNAL Submitted (11-DEC-2009) Genome Analysis, Fritz Lipmann Institute, Beutenbergstr. 11, Jena 07745, Germany atgggtaaggttcacggtggtttgaacagagctggtaaagtcagaaacgctactccaaacgttgagaagaaggaggtcagaaagccaaaggttggtcgtgccaagaagagattgttgtacaaccgtcgtttcgtcaacgttgtcgttggtttcggaaagaagaagggttacaacactcaaaacgtcccaaatgtctaa
position 102
XM_020573799.1 - Heterostelium album PN500 - NCBI
[Candida] auris 60S ribosomal protein L36 (CJI97_000728), partial mRNA. (300 bp)
Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA atggctagatctggtattgctgtcggtttgaacaagggccacaaggtcaacgctaaggaggttgctccaaagatctcccagagaaagggcgccctttcccagagaaccaagttcgtcagaagcattgtgtctgaggtttccggcttggctccatacgagagaagattgatcgagttgatcagaaacgccggtgagaagagagccaagaagttggccaagaagagattgggtactcacaagagagctctcagaaaggttgaggagatgaaccagatcattgctgagtccagaagacactaa
position 216
XM_029032793.1 - [Candida] auris - NCBI
Saccharomyces cerevisiae S288C ribosomal 60S subunit protein L36B (RPL36B), partial mRNA. (303 bp)
Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA atggctgtcaagactggtatcgctattggtttgaacaagggtaagaaagtcacccaaatgactccagccccaaagatctcctacaagaagggtgctgcctccaacagaaccaagttcgtcagatctttggttagagaaatcgccggtttgtccccatatgaaagaagattgatcgatttgatcagaaactccggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcaccagagccaaggctaaggtcgaagaaatgaacaacatcattgctgcctctcgtcgtcattaa
position 219
NM_001184312.1 - Saccharomyces cerevisiae S288C - NCBI
Saccharomyces cerevisiae S288C ribosomal 60S subunit protein L36A (RPL36A), partial mRNA. (303 bp)
Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA atgaccgttaagacaggaattgctattggtttaaacaaaggtaagaaggtcactagcatgaccccagctccaaaaatctcttacaagaaaggtgctgcttccaacagaaccaagttcgtaagatctttggtcagagaaatcgctggtttgtctccatacgaaagaagattgattgatctaataagaaactctggtgaaaagagagctagaaaggtcgccaagaagagattgggttctttcaccagagccaaggctaaggtcgaagaaatgaacaacatcattgctgcttctcgtcgtcactaa
position 219
Synonym: RPL39B
NM_001182701.1 - Saccharomyces cerevisiae S288C - NCBI
PREDICTED: Fukomys damarensis uncharacterized LOC117283624 (LOC117283624), ncRNA. (322 bp)
by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:117283624" ncRNA 1..322 /ncRNA_class="lncRNA" /gene="LOC117283624" /product="uncharacterized LOC117283624" /db_xref="GeneID:117283624" ORIGIN // ctgataatggatctgagaagacttctagactccagtgtcaggctgtcttcaagaagagattgagagacccctgatttcgggaacgtacatacaacatgaagttgggccaccctttaactgactatggatcttacaactatatctgcaaagtggaggagcttgaacagtcttctgtaagcttttctggatgtgctgttgatcgatcccacccacctggctcattcagcatgagagaggtgatgaaatggatggaagaaaaccaccagcctgcccatgtgaaaatatgagaactgggaattcattttggaatattgttggagtc
position 50
XR_004514658.1 - Fukomys damarensis (Damara mole-rat) - NCBI
[Candida] duobushaemulonis 60S ribosomal protein L36 (CXQ87_004317), partial mRNA. (300 bp)
for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30329, USA atggctagatctggtattgctgtcggtttgaacaagggccacaaggtcaacggtaaggaggttgctccaagaatctcccagagaaagggtgctctttcccagagaaccaagttcgtcagaagcattgtctctgaggtctccggtttggctccatacgagagaagattgattgaattgatcagaaacgccggtgagaagagagccaagaagttggccaagaagagattgggtactcacaagagagctctgagaaaggtcgaggagatgagtcagatcatcactgagtccagaagacactaa
position 216
XM_025482761.1 - [Candida] duobushaemulonis - NCBI
Candida parapsilosis uncharacterized protein (CPAR2_104710), partial mRNA. (333 bp)
Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 333) AUTHORS Guida,A. TITLE Direct Submission JOURNAL Submitted (19-OCT-2011) to the INSDC atgttcagaccaattgcccgtatatcatcaagaagattgttttcaatcactcctagaagatcaaacttgattggagacttgtatgtccaaaacattagacaattcaaaccacaagccctttcacaagaagagattgattccgcagttaagaagtttcaattaccaggtaaaccaaccattccacaaattcacgaattgtcaactgaacaagttaaagagtatgagcaaaatgaagttgaagctgaggctgcacaaccaactgaagctaattctgaaactaaaccagatgaagattggtttgtttttgatgaagttgaagctgaaggacattag
position 124
XM_036812515.1 - Candida parapsilosis - NCBI
Kuraishia capsulata CBS 1993 uncharacterized protein (KUCA_T00004322001), partial mRNA. (318 bp)
atgatacaacaacgctttgaggttgaagacagtatcgccgctggtgttaacaagggtcacaaagtgaccgctaaggaggttgccccaaaaatctcgtacagaaagggtgctttgtccaagagaaccgccttcgtcagagacattgtccgtgaagtgtccggtttggctccatacgagagacgtgtcattgagttgatcagaaatgctggtgagaagcgtgccaagaagctggccaagaagagattgggaactcacttgagagccaaggccaaggttgaggagatgaacaagatcatccaagagtctagacgtcactaa
position 234
XM_022601045.1 - Kuraishia capsulata CBS 1993 - NCBI
PREDICTED: Echeneis naucrates titin-like (LOC115036223), mRNA. (6594 bp)
gttgaagagctggacgcagcgaataaacatgcagtaaaaccccaaagagagagtgtatctgaagtcaaccaaagtgtttccaaagaaagtgtacctgaagttccttctgtgagattggacactgctgaaattggtgtagatgaagttcatgaggtcagtgtttcacatccagaagaaagtataaaagaattagacagcacggatgacagccagacgactgaagctgtgtttttagaagctttacctgaagatgaagagattgttgcagacgaaggttctgtagtcggactccatcaagaagagattgttgcagacaaaggttctgtggtccaaatctgtcaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagacgaaggttctgtggtcggactccatcaagaagagattgttgcagacaaaggttctgtggtccaaatctgtcaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggt...
position 2827
XM_029494347.1 - Echeneis naucrates (live sharksucker) - NCBI
Caenorhabditis elegans Uncharacterized protein (F29B9.11), mRNA. (333 bp)
Institute at Washington University, St. Louis, MO 63110, USA gatgctgaaccgtgctgtgctctccttggctagaagccaacatgtcatccgtcgctcgcttcacaagggagttgactcgaccccaccactccgtttcacctctgtcagcgagaaggttgccctttacggactcatctgcgtcgctttcatggcatacccaacttccgtcctcttcagacttgatagtcttcgcccaagaccggataatgctctctccccagaagtccaagaagagattgacgcccgtgttgccgcccgcagacagtagaagtaatattatgccacgagccattgtgtagacttttgagaacaacaataaatcgattcttgttt
position 227
NM_001383083.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
PREDICTED: Papaver somniferum uncharacterized LOC113332400 (LOC113332400), ncRNA. (267 bp)
LOC113332400" /product="uncharacterized LOC113332400" /db_xref="GeneID:113332400" ORIGIN // gaagaagctggcagcactgaaaccagagaatagcactgtcaatgagtgggaagagttcgtgaaacatgtttgctcggaggaattcagaacaaaaagattctggatgcaacaaatcaggaagaaatacaccactccacacactatcagtagactgggttgggtgagactcgaggctaagatgcaaaaggaacggaaaacacaagaagagattgatagagtcgaagtttggacaacgggtcacaaacataaggaaggaaaggaacctaa
position 200
XR_003351493.1 - Papaver somniferum (opium poppy) - NCBI
Saccharomyces eubayanus RPL36B-like protein (DI49_5219), partial mRNA. (246 bp)
of Genetics, University of Wisconsin-Madison, 425-G Henry Mall, 2434 Genetics/Biotechnology Center, Madison, WI 53706-1580, USA atgactccagctccaaagatctcctacaagaagggtgctgcctccaacagaaccaagttcgtcagatctttggtcagagaaatcgctggtttgtctccatacgaaagaagattgatcgatttgatcagaaactccggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcatcagagccaaggctaaggtcgaggaaatgaacaacatcatcgctgcttctcgtcgtcattaa
position 162
XM_018368212.1 - Saccharomyces eubayanus - NCBI
PREDICTED: Haliotis rubra uncharacterized LOC124281168 (LOC124281168), ncRNA. (343 bp)
lncRNA" /gene="LOC124281168" /product="uncharacterized LOC124281168" /db_xref="GeneID:124281168" ORIGIN // gtgcacatcaaggttttgaccaattctgcagaagacttgaaacgcttggcgtattaggagcgctaaaacatcatggaacacgcatgaaagaagtttttgtatatgaaaaaaggcttctggattctacaacaatagaactattgttcgagccagatttagcagaggccaactccaaccgacgccgccaagaagagattgttctctcaaactggagagattttcttcttgatttggaagaaggtacggaagtccccacactcaaagacctcttggtgtttgtgaccggggctgacggaatcccgcctctgggattcgacccctctccacacctgctgtttcactc
position 186
XR_006899862.1 - Haliotis rubra (blacklip abalone) - NCBI
PREDICTED: Chiloscyllium plagiosum uncharacterized LOC122559481 (LOC122559481), ncRNA. (308 bp)
db_xref="GeneID:122559481" ORIGIN // tgatagaaacacagaattcaaagcactggagacaccatcctcactgtttaaagttttcaactggtgtttgtggattatatattatcggtactgaacatgtgtacaaacagctttatcatcatgatgcctgaccacaaaagactgagacatgatggaagaagtgacatcaaacaaaaagagccaaaggcccttaccatgcccttgcatcctccaagcaggcttctgccattagccaagaaagagattgttttggaacaagaagagattgattaacagttgtataccagccatgtcatgatttggaggtg
position 256
XR_006314432.1 - Chiloscyllium plagiosum (whitespotted bambooshark) - NCBI
Echinococcus granulosus hypothetical protein (EGR_02867), partial mRNA. (285 bp)
Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, No. 250 Bibo Road, Shanghai 201203, China atgtcaatttatgtggagcaaatgaggtcaaaatacacgtatttacgaatacgtatgcaacgttctaattcggtttgtcgcagtacgacttcaaaaaccaagtggtatttgtccttttgtcactggatggcagttgtttatggcagagtgtcaagaagagattggttggattctaagcaccaaataaatcaagaacttgaggatgcattagcatcactagccaaaccacaatctccctcaggacaaatgagggcaataagcttgaagaatttaccttctctgtga
position 152
XM_024492116.1 - Echinococcus granulosus - NCBI
PREDICTED: Haliotis rubra uncharacterized LOC124288830 (LOC124288830), transcript variant X2, mRNA. (360 bp)
gtggtgaagttatctcaggccgaggattacacggcctttgaagacctgattcagatggcaggttgtatatccatggtccatacgctgagcaggcgacaagaaatgtgcaaggcacatcaaggttttgaccaattctgcagaggacttgaaacgcttggcgtattaggagcgctaaaacatcatggaacacgcatgaaagaagtttttgaatatgaaaaaaggcttctggattctacaacaatagaactattgttcgaagcagatttagcaaaggccaactccaaccgacgccgccaagaagagattgttctctcaaactagagaga
position 329
XM_046725384.1 - Haliotis rubra (blacklip abalone) - NCBI
Cryptosporidium muris RN66 prefoldin subunit 2, putative, mRNA. (372 bp)
Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA REFERENCE 2 (bases 1 to 372) AUTHORS Silva,J.C. TITLE Direct Submission JOURNAL Submitted (02-MAY-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA atggttgagacaggatatactaaggagacacaagaagagattgttcaactagataagaaactcaaactactaaacaataagatttcagagcttactcaagatagtaaagagtatggtctagtcttaaatgcatttgagaaggtagacgagaaccgacgatgttttagagttattggtggtgtgatggttgagagaaatgttaaaactgttaaacctgctcttgaaaaagaaaagagtgcgttagatagtgcaatttccgaattagagaagcagtatgaatctattgaagaggaaatgaagaatctaattgagaaatatagtacaaatagtgctgatcc...
position 31
XM_002141116.1 - Cryptosporidium muris RN66 - NCBI
[Candida] pseudohaemulonii 60S ribosomal protein L36 (C7M61_002398), partial mRNA. (300 bp)
Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA atggctagatctggtattgctgtcggtttgaacaagggccacaaggtcaacgctaaggaggttgctccaagaatctcccagagaaagggtgctctttcccagagaaccaagttcgtcagaagcattgtctctgaggtctccggtttggctccatacgagagaagattgattgaattgatcagaaacgccggtgagaagagagccaagaagttggccaagaagagattgggtactcacaagagagctctcagaaaggtcgaggagatgaaccagatcatcactgagtccagaagacactaa
position 216
XM_024857773.1 - [Candida] pseudohaemulonii - NCBI
Metarhizium robertsii ARSEF 23 Fungal transcriptional regulatory protein mRNA. (273 bp)
Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, 300 Fenglin Road, Shanghai, Shanghai 200032, China atgattgctctcaagtcgtggaaaaagtctgaacgggtccgctgggacggaaataagcatagtcctgaggagacggctggcttgtttggtctcggtgccctttcatggcttaacccgctctcgttggcaggatacaagaagagattggccctagaggacttgtaccgcctcgattgcaacttggcatcagagcatctgcaggtcaatcacccgcctgtgtcaacagtctgcgcagtagccctgggaaacgttacggtctggccagagcgctga
position 135
XM_011412523.1 - Metarhizium robertsii ARSEF 23 - NCBI
Dictyostelium purpureum hypothetical protein, mRNA. (381 bp)
Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (26-APR-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA tcattcttcaactcattagcttcattaaccactagagctcaagttatgaaaagagctcaaagaggtttatacggtggaaaagatattctttttggaaatattttaagtttttcaaataaaaaaacaagaagagattggaaaccaaatgttcacaacaaaacttatcacagcaatcttttaggtacagatattagagttagagttacatcatatgttatcagatgtattgataaagcaggttcattcgataattatattgtacaaacaaaagataaagatttacaatcagaattaggttcagaattaaaagttgctatgaagaatgttttaaaaagtaaagcaattgaaattttagaacaagaagctaaacaagaacaagaa
position 125
XM_003285195.1 - Dictyostelium purpureum - NCBI
Colletotrichum karsti uncharacterized protein (CkaCkLH20_09773), partial mRNA. (381 bp)
Hunan 410004, China atggcccccggtatcattgagcgcatccaacaaaagattgagctcttccgtctggagcagcgctacacccgccgtcgccatcgccgatctacctttatgtccaacgccgtctacgtcgatggcgagtacgtctaccagacccccaattccaccggttcctcctcgaccggtagcaccagcagcaaggagacatcctccggcgtcaacgcccttcaccacgcagagccactttctcctaccgtggcccccgcgcagactgagcccagcaagaagagattgagccgtttcgcctccatgcccggctttggatcatcaagcaagcagagcccgactcaggactggcggacaagtaatgtcactgtcgacgaggtccgacggtag
position 267
XM_038892488.1 - Colletotrichum karsti - NCBI
PREDICTED: Zingiber officinale uncharacterized LOC122034943 (LOC122034943), transcript variant X3, ncRNA. (348 bp)
cgttggatctgggcatcggcgaccggctgtgtgaggtaacgcccattgtttccttccgatttttcccttgttttgttcgtcggcaagaacaagtcgagccctaacttcgatctcggagagattggtgtcttgtttctggccaccacagctggactagatcaactcctccaccggatctgtgatcgtactctagccaagatcctgagagaagcagagcttgtgttgtgattccggccactacagctctggtggggattgctcttcttcctcagatctgtggtttgctccggcgatcaagaagagattgttaacaccgaatccttatag
position 316
XR_006126834.1 - Zingiber officinale - NCBI
PREDICTED: Haliotis rubra uncharacterized LOC124288830 (LOC124288830), transcript variant X1, mRNA. (390 bp)
acggcctttgaagacctgattcagatggcaggttgtatatccatggtccatacgctgagcaggcgacaagaaatgtgcaaggccataacaaaattcattgtgttcggacgtgcacatcaaggttttgaccaattctgcagaggacttgaaacgcttggcgtattaggagcgctaaaacatcatggaacacgcatgaaagaagtttttgaatatgaaaaaaggcttctggattctacaacaatagaactattgttcgaagcagatttagcaaaggccaactccaaccgacgccgccaagaagagattgttctctcaaactagagaga
position 359
XM_046725382.1 - Haliotis rubra (blacklip abalone) - NCBI
Scheffersomyces stipitis CBS 6054 60S ribosomal protein L36 partial mRNA. (288 bp)
US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA ggaattgctgttggattaaacaagggtcacaagactaccgctaaggaagttgctccaaagatctcttacagaaagggtgctctttccaagagaaccgacttcgtcagaaacatcgtcaaggaagttgctggcttagccccatacgaaagaagattgatcgaattgatcagaaacgccggtgaaaagagagctaagaagttggccaagaagagattgggtacccacaagagagccttgaagaaggttgaagaaatgaacaaggtcattgctgaaaccagaagacactaa
position 204
XM_001383429.1 - Scheffersomyces stipitis CBS 6054 (Pichia stipitis CBS 6054) - NCBI
Yamadazyma tenuis ATCC 10573 ribosomal protein L36e (CANTEDRAFT_125240), mRNA. (383 bp)
Mitchell Drive, Walnut Creek, CA 94598-1698, USA aactactagaacgttaataatggttaagtcaggtattgccagtggattaaacaagggtcacaaagtcaccccaaaggatgtcaagccaaagatctcttacagaaagggtgctttgtccaagagaaccgtctttgtcagagacatcgtcaaggaagttgccggtttggccccatatgaaaagagattgatcgaattgatcagaaacgctggtgaaaagagagctaagaagttggccaagaagagattgggtactcacaagagatctttaaagaagattgaagacatgaacaaggtcatcgctgaagccagaagacactaaacatactttcaaagtcttttaaatcataacatctgatgtacaaataatataagtcaacattcta
position 235
XM_006688023.1 - Yamadazyma tenuis ATCC 10573 - NCBI
PREDICTED: Fukomys damarensis uncharacterized LOC104865732 (LOC104865732), ncRNA. (417 bp)
ncRNA_class="lncRNA" /gene="LOC104865732" /product="uncharacterized LOC104865732" /db_xref="GeneID:104865732" ORIGIN // tgtagaggagactccagagaactctcctgccttctgccatctgaagacacagtaggaaaaaggacatctgtaaaccagcaaaccattcaaagagaatggatttcagtttgactcaaggagttgcctggctgtgaaatggactacagtaatgatagtcacagaagatggttcaagaagagattggacaaaccaactgaaggagacatcgtgaagaagacttgaataccaggtaggctctatagtcagcacagaatgttcagcacggtccaagaaaatcactgtatactggacctttaggatggtgaaccgaggagctgcgaggctggggtgcttcctggaagaatgagagctaagctcaaagccaggcttctgctcctcgatgctacatgttcaaataaaaaagtatacccctggcct
position 171
XR_781255.1 - Fukomys damarensis (Damara mole-rat) - NCBI
Exophiala aquamarina CBS 119918 hypothetical protein partial mRNA. (288 bp)
Cambridge, MA 02142, USA atgccagacaatccacagtttcttggaccactactcccgcaacacattgccgaaaccatcaacgtcagcattggacccagtggcgagaacagggagtatctcttgcatctccaagatgccctagaagctctgagtgctcacagccatgacgaacatattgccgatctagcacgaagagtgcgtgctttggatccacctacgcggccggcatgtccttcttcaatcggccacgacttgaggaagattaacagcaccgaagaacaagaagagattgagaaggatacatga
position 262
XM_013407183.1 - Exophiala aquamarina CBS 119918 - NCBI
Phytophthora infestans T30-4 secreted RxLR effector peptide protein, putative (PITG_09915) mRNA, complete cds. (396 bp)
tgtcagcaatgggatcgccagagctcgtccacacgcttgacgaagtgcgcagcgacgctgggaccccgaaaagatatttacgagtacacggaaaggatggagaaaccggagcggaggagcgaggtcttggtgaactaatggctaagattaaatacatggtggagaatgcagacctcagatcattgcttaaggcaatcctggatgaaatattaaaggccgatgacgggtataggacttgggtggcgcttcggtataacgcacacggcgctggcgagctgttgaacttatggtctccaagaagagattga
position 383
XM_002902419.1 - Phytophthora infestans T30-4 - NCBI
PREDICTED: Pantherophis guttatus A disintegrin and metalloproteinase with thrombospondin motifs 13-like (LOC117660035), mRNA. (422 bp)
ttaggggagatgatcacagtccaggtgttgcagagttccttgaactgcagcgcaggagaaatattactcttttcgacacggacaatgtggcggatggcctgtaagaaactgaagctgttgctggtgaccacccaaaccaacaccctgatggtcaggcaacgccggctgttgtcgggcagtggcgttgtgctacggtacaccagccgattggcagagaagaaacaccatcaaggtgtgtagcccgtggaacggctcgccaccagaagttgtggatgctccaacactggaggttttcaagaagagattggacagcctttggtctgagatggg
position 387
XM_034408090.1 - Pantherophis guttatus - NCBI
Suillus discolor ABC transporter (F5147DRAFT_558639), partial mRNA. (360 bp)
Mitchell Drive, Walnut Creek, CA 94598-1698, USA atttatgttgccttagtcagctctagtggttgcagtaaaagtacagtcatccagtcactagagtgtttctacgatccaatttctggacagatttcactcgacggagagcttatcgacgagtttaacgtccaggcatatcgacagcagctttcacttgtgtcgcaagagcctaatttgtacgcgggaactatccacttcaatatcttgctcggtgcctccataccggaatctgaggtcacacaagaagagattgaggccgcttgttgtgatgctaatatactagattttattcaatcacttccagatggatttaatactgaagtcggtggcaagggatcccagcttttggggggtcaaaaa
position 241
XM_041430549.1 - Suillus discolor - NCBI
Candida parapsilosis uncharacterized protein (CPAR2_704170), partial mRNA. (426 bp)
to the INSDC atgggaagaaaaacctgggactcgataccgaccaagttcagacccttgcctaacagactcaatgttgtattgtctagatcgtttgacaataaagttatcgatgagaatattttgcatgcaagttcagttgaggactcattgaagcttgtacgagaagaaaatattgaacgtgtttatgtcattggtggtgctgaaatttacaacgagtttatcaagagtggattagttgataatgtcttgttgactgaaatagaacattcggagcaagaagagattgcaatggatacgtttttgaaatttgatgtgaaccaatggacaaaactgtcgaaatcggaattgattcaattcacaggagaggaagcaatcgatgacgacaaccaagaaaacaagtttgtttacaattacacattatggcaaaaacggtag
position 265
XM_036812201.1 - Candida parapsilosis - NCBI
PREDICTED: Onychomys torridus cysteine-rich secretory protein 1-like (LOC118569849), mRNA. (426 bp)
LOC118569849" /note="CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family; Region: CAP; cl00133" /db_xref="CDD:412178" ORIGIN // atgatattattcccactgttgttgtttcttgctgctgtgttacccccatccgttcttcgagaatactatgagaatatggaaatcgagcatttgaaaaccactagagagtcagtccaagaagagattgtaaagaagcacaaccaactgagaagaatggtttatccacctggtagtgacttactaaagatgcaatggagcaatgatgcccgagtgaatgcacagagatgggcaaaccagtgcacttacgaagacagtcctgaagattccaggaccaccaacataaaatgtggtgagaatatcttcgtttcagagtacccagtatcatggtcttgtgcaattcaaagctggtatgatgaatccatagatttaaggtttggttcaaacccatttccagctggttatactcagttccgaatcacccta...
position 115
XM_036168105.1 - Onychomys torridus (southern grasshopper mouse) - NCBI
Trichinella spiralis retrotransposon gag protein (Tsp_08954) mRNA, complete cds. (402 bp)
School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA atgccatcggcgtaccgaggtgactactatcgcccgccccatgcttttcgtccggagatggattccgtcgaatggctggagaggctggaagacttcctctgcctcagcagggttccgccttctgaccacggcatggccgctcgctatcttcttagcgactcagttcaccgcgagctctacccggcaggacaaacaagaggggattccttcgaagagttcaagaagagattgctggacgcgtacggcccggaagagtcgacagggcggctgatcgaacggttccacgccatgcaccaacgcgagggcaaaaccatcgaacaatacgcccaggagatggcggaagttgaacgcagagccggcgtaacagaacgtgatctcgtgcgcgtttcgccgggggaataa
position 219
XM_003382049.1 - Trichinella spiralis - NCBI
PREDICTED: Coffea arabica dirigent protein 19-like (LOC113692702), mRNA. (325 bp)
like" /protein_id="XP_027070165.1" /db_xref="GeneID:113692702" /translation="MIDNPLTLGPELSSKMVGRAQGFYASASQEEIGLLMTMNFAFIQGKYYGSTITVVGRNPASNMVREMPVIGGSGLFRYARGYALATTYTFDPSPVMLLLNITSM" ORIGIN // cctggtgaatatgatcgataatccgttaactctaggcccagaactcagctcaaagatggtcggaagagctcagggattttatgcgtcagcttcacaagaagagattggtctgttgatgaccatgaactttgctttcattcagggtaagtattatggaagcaccatcaccgtggtagggaggaatcccgcttccaacatggtcagggagatgccggtgataggtggaagtgggcttttccgatatgctagaggttatgctctggcaacaacttacacctttgatccaagtccggtgatgctgttgttgaatataacgtctatgtaa
position 95
XM_027214364.1 - Coffea arabica (coffee) - NCBI
Trichinella spiralis conserved hypothetical protein (Tsp_13150) mRNA, complete cds. (405 bp)
School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA atgatgccatcggcgtaccgaggtgactactatcgcccgccccctgcttttcgtccagagatggattccgtcgaatggctggagaggctggaagacttcctctgcctcagcagggttccgccttctgaccacggcatggccgctcgctatcttcttagcgactcagttcaccgcgagctctacccggaaggacaaacaagaggggattccttcgaagagttcaagaagagattgctggacgcatacggcccggaagagtcgacagggcggctgatcgaacggttccacgccctgcaccaacgcgagggcaaaaccatcgaacaatacgcccaggaggtggcggaagttggacgcagagtcggcgtaacagaacgtgatctcgtgcgcgtttcgccgggggaataa
position 222
XM_003367145.1 - Trichinella spiralis - NCBI

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/caagaagagattg
lang : en | div : | spe : | query_string : caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.081 | 0.081 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?to=0&format=json
0.130 | 0.049 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.136 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]