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2019-02-19 01:14:11, GGRNA : RefSeq release 92 (Jan, 2019)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Caenorhabditis remanei CRE-TAG-80 protein (Cre-tag-80) mRNA, complete cds. (21927 bp)
gaaacgtataatgaagtgccctgttgttcaaccgaagacgaagaaaccagaaagatacatgaaaccgccaagattctcgtgcaagaaactatggaacaactgatttatgacagtccaacagaatttgaaaaacgagtaaacacgccagaacatcatgaagcagacagatccagtgcaacatcaggagctgactttgagaaatccttggatcaagaagtcgcttatgatcgatcttcacctttcttggaacctgtcgaagagccgattttcgaaaagaaagaaccggaactgactcaagaagagattgatcacatcgcttggattcaaagtctagctgagcggtcatcattcgaacaagcagcacctccgacacatccaccagttcctcaaagaatggcaacagttgaagaaccaattgctacgaccgatcttcatgaagaggacagatccagtgcaacatcgggagctcactttgagaaatcattcgaccaagaagtcgcatacgaacgatcttcacctttgttggaatctgtcgaagagccgattttcgaaaagaaagaacctgaactgactcaagaagagattgatcacatcgcttgg...
position 1867
XM_003107901.1 - Caenorhabditis remanei - NCBI
Caenorhabditis elegans CLArinet, functional homolog of cytomatrix at the active zone proteins piccolo and fife (cla-1), partial mRNA. (25584 bp)
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
NM_001307220.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans CLArinet, functional homolog of cytomatrix at the active zone proteins piccolo and fife (cla-1), partial mRNA. (26769 bp)
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
NM_001307219.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Unclassified non-coding RNA ZK1193.9 (ZK1193.9), ncRNA. (133 bp)
AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA gaaggcgaccacgtcgtcgccaagaagagattgaagacgacgaatggagcgaaagtagtaaggaggggttgagggggggggaggtcgggatcgagatggcataatgtaggaaccggatggaagagtctaaaag
position 21
NR_070329.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
PREDICTED: Pseudonaja textilis uncharacterized LOC113437314 (LOC113437314), ncRNA. (153 bp)
including 1 sample with support for all annotated introns" /db_xref="GeneID:113437314" ncRNA 1..153 /ncRNA_class="lncRNA" /gene="LOC113437314" /product="uncharacterized LOC113437314" /db_xref="GeneID:113437314" ORIGIN // acaatcatccaatggaacagcttgccatcagaagctgtgagtacttcatcacttgagactttcaagaagagattggactgtcatttttcagaaatggtgtaggtctcctgcttgggcaggggtttggactagattacctacaaggtcttttcc
position 63
XR_003374214.1 - Pseudonaja textilis - NCBI
Exophiala aquamarina CBS 119918 hypothetical protein partial mRNA. (288 bp)
Cambridge, MA 02142, USA atgccagacaatccacagtttcttggaccactactcccgcaacacattgccgaaaccatcaacgtcagcattggacccagtggcgagaacagggagtatctcttgcatctccaagatgccctagaagctctgagtgctcacagccatgacgaacatattgccgatctagcacgaagagtgcgtgctttggatccacctacgcggccggcatgtccttcttcaatcggccacgacttgaggaagattaacagcaccgaagaacaagaagagattgagaaggatacatga
position 262
XM_013407183.1 - Exophiala aquamarina CBS 119918 - NCBI
Acytostelium subglobosum LB1 hypothetical protein partial mRNA. (297 bp)
Acytostelium Genome Consortium TITLE Direct Submission JOURNAL Submitted (05-SEP-2014) Contact:Hideko Urushihara University of Tsukuba, Faculty of Life and Environmental Sciences; Tennodai 1-1-1, Tsukuba, Ibaraki 305-8572, Japan ggtcagaaacgctactccaaacgtggagaagaaggagacccgcaagtccaaggttggtcgtgccaagaagagattgttgtacaaccgtcgtttcgtcaacgttgtcaccggtttcggaaagaagaagggatacaacacccagaacgttccaaatgtctaagcaacatagtagcgtcgcgtccgtccctcagtagtcccgtgcctctccgctcattgcaacactggacactcgatcacggaggccagtcggtcctcaacagcccgtctgtcctccacgtaaataaacaaccggctttc
position 64
XM_012897535.1 - Acytostelium subglobosum LB1 - NCBI
PREDICTED: Helianthus annuus uncharacterized LOC110938512 (LOC110938512), ncRNA. (221 bp)
ncRNA 1..221 /ncRNA_class="lncRNA" /gene="LOC110938512" /product="uncharacterized LOC110938512" /db_xref="GeneID:110938512" ORIGIN // ctcaagtacggcgtgcaacaagtgcctacccacgtcgtcaaagaactcatcatgcacgaggtggtgcttgggggtggccaggatgcatctgctgttaccacaaccatcatcgtgcggggaagtttgaagccaaattttatgacaaggttctgcaagaagagattggaggcgttaaaggacatttcgggccaattaatgctttggcattcaacccggatgga
position 153
XR_002591448.1 - Helianthus annuus (common sunflower) - NCBI
Echinococcus granulosus hypothetical protein (EGR_02867), partial mRNA. (285 bp)
Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, No. 250 Bibo Road, Shanghai 201203, China atgtcaatttatgtggagcaaatgaggtcaaaatacacgtatttacgaatacgtatgcaacgttctaattcggtttgtcgcagtacgacttcaaaaaccaagtggtatttgtccttttgtcactggatggcagttgtttatggcagagtgtcaagaagagattggttggattctaagcaccaaataaatcaagaacttgaggatgcattagcatcactagccaaaccacaatctccctcaggacaaatgagggcaataagcttgaagaatttaccttctctgtga
position 152
XM_024492116.1 - Echinococcus granulosus - NCBI
PREDICTED: Papilio machaon 40S ribosomal protein S4-A-like (LOC106708482), partial mRNA. (348 bp)
gcttctagaaaagtcgttgatttcattccttttgagactgataaagttgtttacgtcataagaggagaagatatgggaagagtgtgtgttattaaacacatcaaagaagttgattattctgattctattattacagttgaggattttgctaagaaggtctttactgttccttctaagaatctcattgtcatcggtaacagtgaagataatcttttgatttctctaccagcacagagaggaattaaactcaatgaacttgaagagagtaatattaagtacggagagatagtaaaacaagaagagattgagattgaagaagaatattaa
position 316
XM_014500008.1 - Papilio machaon (common yellow swallowtail) - NCBI
Polysphondylium pallidum PN500 40S ribosomal protein S30 (rps30-2), partial mRNA. (198 bp)
G., Schaap,P., Noegel,A.A., Felder,M. and Platzer,M. TITLE Direct Submission JOURNAL Submitted (11-DEC-2009) Genome Analysis, Fritz Lipmann Institute, Beutenbergstr. 11, Jena 07745, Germany atgggtaaggttcacggtggtttgaacagagctggtaaagtcagaaacgctactccaaacgttgagaagaaggaggtcagaaagccaaaggttggtcgtgccaagaagagattgttgtacaaccgtcgtttcgtcaacgttgtcgttggtttcggaaagaagaagggttacaacactcaaaacgtcccaaatgtctaa
position 102
XM_020573799.1 - Heterostelium album PN500 - NCBI
Saccharomyces eubayanus RPL36B-like protein (DI49_5219), partial mRNA. (246 bp)
of Genetics, University of Wisconsin-Madison, 425-G Henry Mall, 2434 Genetics/Biotechnology Center, Madison, WI 53706-1580, USA atgactccagctccaaagatctcctacaagaagggtgctgcctccaacagaaccaagttcgtcagatctttggtcagagaaatcgctggtttgtctccatacgaaagaagattgatcgatttgatcagaaactccggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcatcagagccaaggctaaggtcgaggaaatgaacaacatcatcgctgcttctcgtcgtcattaa
position 162
XM_018368212.1 - Saccharomyces eubayanus - NCBI
Saccharomyces cerevisiae S288C ribosomal 60S subunit protein L36B (RPL36B), partial mRNA. (303 bp)
Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA atggctgtcaagactggtatcgctattggtttgaacaagggtaagaaagtcacccaaatgactccagccccaaagatctcctacaagaagggtgctgcctccaacagaaccaagttcgtcagatctttggttagagaaatcgccggtttgtccccatatgaaagaagattgatcgatttgatcagaaactccggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcaccagagccaaggctaaggtcgaagaaatgaacaacatcattgctgcctctcgtcgtcattaa
position 219
NM_001184312.1 - Saccharomyces cerevisiae S288C - NCBI
Saccharomyces cerevisiae S288C ribosomal 60S subunit protein L36A (RPL36A), partial mRNA. (303 bp)
Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA atgaccgttaagacaggaattgctattggtttaaacaaaggtaagaaggtcactagcatgaccccagctccaaaaatctcttacaagaaaggtgctgcttccaacagaaccaagttcgtaagatctttggtcagagaaatcgctggtttgtctccatacgaaagaagattgattgatctaataagaaactctggtgaaaagagagctagaaaggtcgccaagaagagattgggttctttcaccagagccaaggctaaggtcgaagaaatgaacaacatcattgctgcttctcgtcgtcactaa
position 219
Synonym: RPL39B
NM_001182701.1 - Saccharomyces cerevisiae S288C - NCBI
Lachancea lanzarotensis LALA0S05e07514g1_1 (LALA0_S05e07514g), partial mRNA. (303 bp)
UMR 1319, Institut Micalis, Bat. CBAI, Thiverval-Grignon, 78850, France atggccgttaaatctggtatcgctactggtttgaacaagggtaagaaggtcaacgccatgaccccaaccccaaagatctcctacagaaagggtgcttcttccaacagaaccaagttcgtcagatctttggtcaaggaagttgccggtttggccccatacgaaagaagattgatcgatttgatcagaaacgctggtgaaaagagagccagaaaggtggccaagaagagattgggtaccttcggcagagccaaggccaaggtcgaggagatgaacgacatcatcaccgcttctcgtcgtcattaa
position 219
XM_022772423.1 - Lachancea lanzarotensis - NCBI
Komagataella phaffii GS115 60S ribosomal protein L36 (PAS_FragB_0036), partial mRNA. (306 bp)
/ Gent University, Technologiepark 927, Ghent, 9052, BELGIUM atgagaaatattgtactaacaaattcaggtattgcagtaggtgctaacaagggacacaaggtcaccccaaaggccgttgctccacaaaagagagtcgctatcagccaaagaactgactttgttagaaagttggtccgtgaggtcactggtctgtctccatacgaaagaagaatcattgagttgatcagaaactctggtgagaagagagccagaaagttcgccaagaagagattgggtactcacaccagagctaaggctaagttggaagagatgcaaaacgttatccaggaagcaaagcgtcattaa
position 222
XM_002490801.1 - Komagataella phaffii GS115 - NCBI
Caenorhabditis remanei hypothetical protein (CRE_18336) mRNA, partial cds. (2351 bp)
cttggaaggataaacgaagaacatgaacatgacgatgaagatgacgaagttcagaccgagagtagctcagacagcatgataatgcatgagaactcttccgagccaataatgcaattgaatgtcgaagaatacatccaaacaatgattgaaaaactgagcagtcatcattcgatacatgaagcaccaagattctcgtgcaagaaactatggtccaccttcgcttatgatcgatcttcacctttgttggaacctgtcgaagagccgattttcgaaaagaaagaaccggaactgactcaagaagagattgatcacatcgtttggattcaaagtctagctgagcagtcatcattcgaacaagcagcacctccgactcgtccaccagttcctcaaagaatggcaacagttgaagaaccaattgctacgaccgatcttcatgaagaggacagatccagtgcaacatcaggagctgacatcgaacaatccttggatcaagaagtcgcttatgatcgatcttcacctttgttggaacctgtcgaagagccgattttcgaaaagaaagaaccggaactgactcaagaagagattgatcacatcgtttgg...
position 1624
XM_003089063.1 - Caenorhabditis remanei - NCBI
Caenorhabditis elegans Uncharacterized protein (F29B9.11), partial mRNA. (267 bp)
Genome Institute at Washington University, St. Louis, MO 63110, USA atgctgaaccgtgctgtgctctccttggctagaagccaacatgtcatccgtcgctcgcttcacaagggagttgactcgaccccaccactccgtttcacctctgtcagcgagaaggttgccctttacggactcatctgcgtcgctttcatggcatacccaacttccgtcctcttcagacttgatagtcttcgcccaagaccggataatgctctctccccagaagtccaagaagagattgacgcccgtgttgccgcccgcagacagtag
position 226
NM_068208.6 - Caenorhabditis elegans - NCBI - UCSC - WormBase
PREDICTED: Cricetulus griseus uncharacterized LOC103163642 (LOC103163642), ncRNA. (266 bp)
product="uncharacterized LOC103163642" /db_xref="GeneID:103163642" ORIGIN // ggtatagactgctgcatgctggctggctaggttgctctttttaacttagaaagttgaggaaacaacaaagtagaggatgaatggtatctggaggttgacatactgatactcggggaaggtacagatgtgaatttcagcatgaagaaaggaagatattttctgttgttcaaggatgagacataccatatgagagggagccactataggtccaagaagagattgggaccatggagatttccagagacctacaaggatgacatgatctc
position 210
XR_003480888.1 - Cricetulus griseus (Chinese hamster) - NCBI
PREDICTED: Papaver somniferum uncharacterized LOC113332400 (LOC113332400), ncRNA. (267 bp)
LOC113332400" /product="uncharacterized LOC113332400" /db_xref="GeneID:113332400" ORIGIN // gaagaagctggcagcactgaaaccagagaatagcactgtcaatgagtgggaagagttcgtgaaacatgtttgctcggaggaattcagaacaaaaagattctggatgcaacaaatcaggaagaaatacaccactccacacactatcagtagactgggttgggtgagactcgaggctaagatgcaaaaggaacggaaaacacaagaagagattgatagagtcgaagtttggacaacgggtcacaaacataaggaaggaaaggaacctaa
position 200
XR_003351493.1 - Papaver somniferum (opium poppy) - NCBI
Metarhizium robertsii ARSEF 23 Fungal transcriptional regulatory protein mRNA. (273 bp)
Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, 300 Fenglin Road, Shanghai, Shanghai 200032, China atgattgctctcaagtcgtggaaaaagtctgaacgggtccgctgggacggaaataagcatagtcctgaggagacggctggcttgtttggtctcggtgccctttcatggcttaacccgctctcgttggcaggatacaagaagagattggccctagaggacttgtaccgcctcgattgcaacttggcatcagagcatctgcaggtcaatcacccgcctgtgtcaacagtctgcgcagtagccctgggaaacgttacggtctggccagagcgctga
position 135
XM_011412523.1 - Metarhizium robertsii ARSEF 23 - NCBI
Scheffersomyces stipitis CBS 6054 60S ribosomal protein L36 partial mRNA. (288 bp)
US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA ggaattgctgttggattaaacaagggtcacaagactaccgctaaggaagttgctccaaagatctcttacagaaagggtgctctttccaagagaaccgacttcgtcagaaacatcgtcaaggaagttgctggcttagccccatacgaaagaagattgatcgaattgatcagaaacgccggtgaaaagagagctaagaagttggccaagaagagattgggtacccacaagagagccttgaagaaggttgaagaaatgaacaaggtcattgctgaaaccagaagacactaa
position 204
XM_001383429.1 - Scheffersomyces stipitis CBS 6054 (Pichia stipitis CBS 6054) - NCBI
[Candida] duobushaemulonis 60S ribosomal protein L36 (CXQ87_004317), partial mRNA. (300 bp)
for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30329, USA atggctagatctggtattgctgtcggtttgaacaagggccacaaggtcaacggtaaggaggttgctccaagaatctcccagagaaagggtgctctttcccagagaaccaagttcgtcagaagcattgtctctgaggtctccggtttggctccatacgagagaagattgattgaattgatcagaaacgccggtgagaagagagccaagaagttggccaagaagagattgggtactcacaagagagctctgagaaaggtcgaggagatgagtcagatcatcactgagtccagaagacactaa
position 216
XM_025482761.1 - [Candida] duobushaemulonis - NCBI
[Candida] pseudohaemulonii 60S ribosomal protein L36 (C7M61_002398), partial mRNA. (300 bp)
Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA atggctagatctggtattgctgtcggtttgaacaagggccacaaggtcaacgctaaggaggttgctccaagaatctcccagagaaagggtgctctttcccagagaaccaagttcgtcagaagcattgtctctgaggtctccggtttggctccatacgagagaagattgattgaattgatcagaaacgccggtgagaagagagccaagaagttggccaagaagagattgggtactcacaagagagctctcagaaaggtcgaggagatgaaccagatcatcactgagtccagaagacactaa
position 216
XM_024857773.1 - [Candida] pseudohaemulonis - NCBI
Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 ribosomal protein L36e (METBIDRAFT_76691), partial mRNA. (300 bp)
Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA atggcccaaaccggtattgctgtcggtttgaacaagggtcacaaaaccacccaaaaggaagttgttccaagactttcccgcaagaagggagtcttgtccaagagagctgctttcgtcagaagcattgtctctgaggtctccggcttggccccatacgagagaagattgatcgagttgatcagaaacgccagcgagaagagagccaagaagttggccaagaagagattgggtacccacaagagagccttgagaaaggttgaggagatgaacaagatcattgctgagtctaagagacactaa
position 216
XM_018858572.1 - Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 - NCBI
Acytostelium subglobosum LB1 hypothetical protein partial mRNA. (411 bp)
Sciences; Tennodai 1-1-1, Tsukuba, Ibaraki 305-8572, Japan tcaactggagtcaaacttgcaaacaattgtatggagattttcgatcagatgaagattcgtcgtcaatatggaatagtcttttataagttgaacgatgacaatactcagattgtggtcgagaagactttaccatatggatcaccattcactactttcctcaccgagctacctcccactgaatgtagatacgtcttagttgactttgcctacaccgaagagtcaacctccaagaagagattggtgttcgtctcatggtgtccaggtacatcaagtattagaagtagaatgatatatactgcttcaaaggatgcacttcgcaaggcattggttggtatccaaactgaggtccaaggttgtgatatatctgaggtccaagaggaacaattccttgagaagatcacgaggttgtag
position 228
XM_012898411.1 - Acytostelium subglobosum LB1 - NCBI
Candida viswanathii 60S ribosomal protein L36 (RPL36_1), partial mRNA. (300 bp)
Yeongudanji-ro, Ochang-eup Cheongwon-gu, Cheong-joo 363-883, South Korea atggctaagtcaggaatcgctgtcggattaaacaaaggtagaaagaccaccgctaaggaagttgctccaaaaatctcatacagaaagggtgctcaatcccaaagagccgttttcgtcagatctatcgtcaaagaagttgccggattggccccatacgaaagaagattgattgaattgatcagaaacgccggtgaaaagagagccaagaagttggccaagaagagattgggtacccacaagagagccttgagaaaggttgaagaaatgaaccaagtcattgctgaatctagaaagcattaa
position 216
XM_026735319.1 - Candida viswanathii - NCBI
Candida viswanathii 60S ribosomal protein L36 (RPL36_0), partial mRNA. (300 bp)
Yeongudanji-ro, Ochang-eup Cheongwon-gu, Cheong-joo 363-883, South Korea atggctaagtcaggaatcgctgtcggattaaacaaaggtagaaagaccaccgctaaggaagttgctccaaaaatctcatacagaaagggtgctcaatcccaaagagccgttttcgtcagatctatcgtcaaagaagttgccggattggccccatacgaaagaagattgattgaattgatcagaaacgccggtgaaaagagagccaagaagttggccaagaagagattgggtacccacaagagagccttgagaaaggttgaagaaatgaaccaagtcattgctgaatctagaaagcattaa
position 216
XM_026734104.1 - Candida viswanathii - NCBI
Saccharomyces eubayanus RPL36A-like protein (DI49_4277), partial mRNA. (303 bp)
Mall, 2434 Genetics/Biotechnology Center, Madison, WI 53706-1580, USA atggccgctaagacaggaatcgcaattggtttgaacaaaggtaagaaggtcactagcatgaccccagccccaaagatctcttacaagaagggtgctgcttccaacagaactaagttcgtcagatctttggttagagaaatcgccggtttgtctccatacgaaagaagattgatcgatctaataagaaactctggtgaaaagagagctagaaaggttgccaagaagagattgggttctttcatcagagccaaggctaaggttgaagaaatgaacaacattatttctgcttctcgtcgtcactaa
position 219
XM_018367307.1 - Saccharomyces eubayanus - NCBI
Kazachstania naganishii CBS 8797 hypothetical protein (KNAG0D00710), partial mRNA. (303 bp)
of Genetics, Trinity College Dublin, College Green, Dublin 2, IRELAND atggccgtcaagactggtattgctgttggtttgaacaagggtaagcaggtcaatgctatgaccccagccccaaagatgtcctacaagaagggtgccatctctaacagaacccagttcgtccgctcgctggtgaaggagatcgctggtctgtccccatacgaaagaagactgatcgacttgatcagaaactctggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcaagagagccaaggccaaggttgaggagatgaacaacgtcatcgctgcctctcgtcgtcattga
position 219
XM_022607478.1 - Kazachstania naganishii CBS 8797 - NCBI
[Candida] glabrata 60S ribosomal protein L36 (CAGL0K10906g), partial mRNA. (303 bp)
Paris Cedex 15, FRANCE. E-mail: lfrangeu@pasteur.fr E-mail:david@labri.fr atggccgttaagactggtattgctgttggtttgaacaagggtactaaggtcacccaaatgaccccagccccaaagatctcttacaagaagggtgctgcttctaacagaaccaagttcgttcgttctttggtcagagaaatcgctggtttgtctccatacgaaagaagattgatcgatttgatcagaaacgccggtgaaaagagagctagaaaggtcgccaagaagagattgggttctttcaccagagctaaggctaaggttgaagaaatgaactccatcattgctgcttctcgtcgtcactaa
position 219
XM_002999537.1 - [Candida] glabrata (Candida glabrata) - NCBI
Eremothecium gossypii ATCC 10895 60S ribosomal protein L36 (AGOS_AFL163C), partial mRNA. (303 bp)
Biozentrum, Klingelbergstrasse 50, Basel CH-4056, Switzerland atggctgttaaatctggtattgctgttggtttgaacaagggtaagaaggtcaccccaatgacccctgctccaaaggtctcttacagaaagggtgcctcctccaagagaaccaccttcgtcagatctatcgtcagagaggttgccggcatggccccatacgagagaagattgatcgacttgatcagaaacgccggtgagaagagagccagaaaggtcgccaagaagagattgggcacctttggcagagctaaggctaaggttgaggaaatgaacgagatcattgctgcttctagacgtcactag
position 219
NM_210741.1 - Eremothecium gossypii ATCC 10895 (Ashbya gossypii ATCC 10895) - NCBI
Tetrapisispora blattae CBS 6284 hypothetical protein (TBLA0A02360), partial mRNA. (303 bp)
of Genetics, Trinity College Dublin, College Green, Dublin 2, IRELAND atggctgtcaaaactggtattgctgttggtttgaacaaaggtaagcaggtcgtctctatgaccccagctgccaagatctcatacaagaagggccaatcttctcaaagaaccaagttcgtcagatctttggtcagagaaatcgctggtttagctccatacgaaagaagattgatcgatttgatcagaaacgccggtgaaaagagagccagaaaggtcgccaagaagagattgggttctttcaccagagccaaggctaaggttgaagaaatgaacaacatcattgctgcctctcgtcgtcattag
position 219
XM_004177506.1 - Tetrapisispora blattae CBS 6284 - NCBI
Lachancea thermotolerans CBS 6340 60S ribosomal protein L36 partial mRNA. (303 bp)
FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) atggccgttaaatctggtatcgctactggtttgaacaagggtaagaaggtcacccagatgaccccagccccaaagatctcgtacagaaagggtgcttcctctaacagaaccaagttcgtcagatctttggtcaaggaggtcgccggtttggccccatacgagagaagattgatcgacttgatcagaaacgccggtgagaagagagccagaaaggtcgccaagaagagattgggtactttcggcagagccaaggctaaggtcgaggagatgaacgacatcatcaccgcctctcgtcgtcactaa
position 219
XM_002555947.1 - Lachancea thermotolerans CBS 6340 (Kluyveromyces thermotolerans CBS - NCBI
Eremothecium cymbalariae DBVPG#7215 Hypothetical protein partial mRNA. (303 bp)
Laboratory, Gamle Carlsberg Vej 10, Copenhagen V DK-1899, Denmark atggctgttaaatctggtattgctgttggtttgaacaagggtaagaaggtcaactcgatgaccccagccccaaagatctcttacagaaagggtgcttcttccaagagaacggagtttgttagatctattgtcaaggaagtcgccgggttggctccatacgagagaagattgcttgatttgatcagaaactctggtgagaagagagccagaaaggttgccaagaagagattgggtacttttggcagagcaaaggctaaggttgaagaaatgaacaacgtcattgctgcttccagacgtcactga
position 219
XM_003644656.1 - Eremothecium cymbalariae DBVPG#7215 - NCBI
PREDICTED: Rosa chinensis uncharacterized LOC112180120 (LOC112180120), ncRNA. (366 bp)
coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:112180120" ncRNA 1..366 /ncRNA_class="lncRNA" /gene="LOC112180120" /product="uncharacterized LOC112180120" /db_xref="GeneID:112180120" ORIGIN // ctcaagaagagattgatgtagttcgaatagaatgggcagagcaggttgatggatatattgaagatgaagtaaaatagtcagcatagattgcaagcatgttgatatcactgtaggaaaaatttagaaagtaaagttccagatattgcaaaatatggatttacatcggcatggttgccgccatcaactcattcctttgccccggaaggttacctccttcagaacatatattccctcaattctaaatatggatctcagcgccaattaagaggtttactaaaaaaaattgggttacctccctcagaacatatattccat...
position 3
XR_002928116.1 - Rosa chinensis - NCBI
PREDICTED: Solanum tuberosum F-box/LRR-repeat protein At3g48880-like (LOC107062341), mRNA. (420 bp)
translation="MSFPKQEEIEVVVMEEGTSPVRIWEDLNIDMLVKIFQSFDLFQLISVIPQVCHAWQSACSDQHLWKTLDLSIMKSNFIRVSIPPYIYVDTPSREKLNRILKICLILSHGNKLTLIFHYNLYVDNNQLTYSAKRYSPNKL" misc_feature 70..213 /gene="LOC107062341" /note="F-box-like; Region: F-box-like; pfam12937" /db_xref="CDD:289689" ORIGIN // atgtcgtttccaaaacaagaagagattgaagttgttgtgatggaagaaggaacttctcctgtaaggatatgggaggaccttaatattgatatgctggtgaagatattccaatcctttgaccttttccagttgatctctgtcattcctcaagtttgtcatgcatggcaatcggcttgttctgaccaacatctttggaaaacgctggacttgtcaataatgaagtcaaatttcatcagagtttcaataccgccgtatatatatgttgacactccatctcgtgaaaaattgaaccgcatcctaaagatttgcttgatccttagtc...
position 16
XM_015312875.1 - Solanum tuberosum (potato) - NCBI
Spathaspora passalidarum NRRL Y-27907 hypothetical protein (SPAPADRAFT_55114), partial mRNA. (300 bp)
Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA atggctaagtcaggtattgctgctggtttaaacaagggtcacaagactaccgctaaggaagtcgctccaaaggtttcctacagaaagggtgctttaagtaagagagctgactttgtcagaaacatcgtcaaggaagttgctggtttagccccatacgaaagaagattgattgaattgatcagaaacgccggtgaaaagagagctaagaagttggccaagaagagattgggtacccacaagagagctttaagaaaggttgaagaaatgaacaaggtcattgctgaatctagaagacactaa
position 216
XM_007374654.1 - Spathaspora passalidarum NRRL Y-27907 - NCBI
Kuraishia capsulata CBS 1993 uncharacterized protein (KUCA_T00004322001), partial mRNA. (318 bp)
atgatacaacaacgctttgaggttgaagacagtatcgccgctggtgttaacaagggtcacaaagtgaccgctaaggaggttgccccaaaaatctcgtacagaaagggtgctttgtccaagagaaccgccttcgtcagagacattgtccgtgaagtgtccggtttggctccatacgagagacgtgtcattgagttgatcagaaatgctggtgagaagcgtgccaagaagctggccaagaagagattgggaactcacttgagagccaaggccaaggttgaggagatgaacaagatcatccaagagtctagacgtcactaa
position 234
XM_022601045.1 - Kuraishia capsulata CBS 1993 - NCBI
PREDICTED: Coffea arabica dirigent protein 19-like (LOC113692702), mRNA. (325 bp)
like" /protein_id="XP_027070165.1" /db_xref="GeneID:113692702" /translation="MIDNPLTLGPELSSKMVGRAQGFYASASQEEIGLLMTMNFAFIQGKYYGSTITVVGRNPASNMVREMPVIGGSGLFRYARGYALATTYTFDPSPVMLLLNITSM" ORIGIN // cctggtgaatatgatcgataatccgttaactctaggcccagaactcagctcaaagatggtcggaagagctcagggattttatgcgtcagcttcacaagaagagattggtctgttgatgaccatgaactttgctttcattcagggtaagtattatggaagcaccatcaccgtggtagggaggaatcccgcttccaacatggtcagggagatgccggtgataggtggaagtgggcttttccgatatgctagaggttatgctctggcaacaacttacacctttgatccaagtccggtgatgctgttgttgaatataacgtctatgtaa
position 95
XM_027214364.1 - Coffea arabica (coffee) - NCBI
PREDICTED: Urocitellus parryii cytochrome P450 2C42-like (LOC113178372), partial mRNA. (330 bp)
misc_feature 330 /gene="LOC113178372" /note="Cytochrome P450; Region: p450; cl12078" /db_xref="CDD:325183" ORIGIN // gaaaagaacaatcaacagtctgaatttaccactgaaaacttgttaaccactgtaactgatgtgtttggagcgggaacagagacaacaagcaccactatgagatatggacttttgctcctgctaaagcatacagatatcacagctaaagtccaagaagagattgaccaagtgattggcagacaccgcagcccttgcatgcaggacaggagccgcatgccctacacagaggctgtgttacacgagatccagagatacattgatctcatccccaccaatctgccccatgcagtgacctgtgatgttaaatttagaaactacttcatccccaag
position 151
XM_026382723.1 - Urocitellus parryii (Arctic ground squirrel) - NCBI
PREDICTED: Calypte anna zinc finger protein 420-like (LOC103535473), partial mRNA. (1339 bp)
ttcacccggagcttccaccataagaggcacctccggagggcgcaggcccgtggggggtggccctgtgcaaagagcccccccggcaagagaaacgggagaaacgggagaaacgggcacgagtggagcgaggggcaagaggggagcaagggccaagagttggccacgggtcaagagttggccaagggtcaagaccctctctccactcaagagttggccaagggccaagagaagaccaaggggcaagaggagattgagggccaagagttgaccaagagtcaagagttgaccaagggtcaagaagagattgagggccaagagttgaccaagggcctagagaagaccaaggggcaagagttgaccaagagccaagagttgaccaagggtcaagaggagattgacggccaagagttgaccaagaaccaagagttgaccaacggccaagagtcagccaatccccaggccctccccggcgccgccctgctgatccgacacccgtgtccccccctcaccaagaagccctacgggtgcccccactgcgggcggaggaggcacctccggagggcgcaggcccgtggggggtggccctgtgcaaagagcccc...
position 494
XM_008501529.1 - Calypte anna (Anna's hummingbird) - NCBI
PREDICTED: Pocillopora damicornis ubiquitin-like protein ATG12 (LOC113683766), mRNA. (345 bp)
translation="MADGGGGAVQEEIGRDMVEGQRKMSEPAQPANNHQAQKSEASKKSLKKKVEVLLKAAGDASIMVKKKWVVDGSKQVSYIIEFIRKYIKCEQQDSLCFGADGKLVLHYCKTQAWG" misc_feature 145..342 /gene="LOC113683766" /note="Ubiquitin-like proteins; Region: UBQ; cl00155" /db_xref="CDD:320785" ORIGIN // atggcggatggtggaggaggagccgtgcaagaagagattggcagagatatggtcgaagggcaacgaaaaatgtctgaaccagcacaacctgcaaacaatcatcaagcacagaaaagcgaagcgtcaaagaaatcattgaaaaagaaagtggaagtgttgcttaaagccgctggagatgcctctattatggtgaaaaagaaatgggtagtggatggatcaaaacaagtgtcatatattatagaatttattaggaagtacatcaaatgcgagcaacaagactcattgtgctttggagctgatggaaagttagttcttcattactgtaagacgcaagcatgggga...
position 28
XM_027201049.1 - Pocillopora damicornis - NCBI
PREDICTED: Peromyscus maniculatus bairdii prefoldin subunit 4-like (LOC102907957), mRNA. (472 bp)
gactcatctggcaagatgctgtgtcaggctgcagaagatgtcaatgttactttcgaagatcagcaaaaaataaacaaatttgctcgaaatacgagtcgaatcacagagctaaaggaggaaatagaagtgaagaagaaacacctccagaatttagaagacgcttgcgacgacatcatgctagcagatgacgactgcttaatgatcccgtaccagatcggagacgttttcattagccactctcaagaagaaacccaggaaatgttagaagaagcaaagaaaactttgcaagaagagattgatgccttagaatccagagtggcgtccatccagcgggtattagccgacttgaaagtacagttatacgcaaaatttggcagcaacataaaccttgaggcggatgaaagctaaacattttctaatactttttttttttaccttgtttaataaacttgaatattgtcttaaataataa
position 286
XM_006984001.2 - Peromyscus maniculatus bairdii (prairie deer mouse) - NCBI
Encephalitozoon intestinalis ATCC 50506 calmodulin (Eint_091500), partial mRNA. (423 bp)
caactatttgcagagtcgcccactgagagagttcccaccgacaggttgggagatatcttgaggtttgcaggatacatcatatctgaaagttatgcagaagagctcatggcctcagttcctggagagatgtttgacttcagccagcttgtagagatctgcgagaaaatccgggaaagagagataacacgcgaggaactgcaaaagtcctttcgaagactggatgcagaaaatacctcgcacatcgatgcaggaaggcttgtccagattctttcttctggagaaaataagtttagtcaagaagagattgaagagcttttgaacattttgaatcccgatggagacgggaagatttgctatgacttgatcatcaagaacatatttggatactaa
position 328
XM_003073592.1 - Encephalitozoon intestinalis ATCC 50506 - NCBI
PREDICTED: Brassica napus uncharacterized LOC111205670 (LOC111205670), ncRNA. (360 bp)
ncRNA 1..360 /ncRNA_class="lncRNA" /gene="LOC111205670" /product="uncharacterized LOC111205670" /db_xref="GeneID:111205670" ORIGIN // aatgagaatttaaagtttacagattttgtttaatattgagctataaatggtatatacaaaaacaggggtataaactattaagaggcttctctctagcaaatgaaaaaaatccagtaaaggtttttcttttttttttttgtgcacaagaagagattgaagccaagaaaaaaaaacccagaaacttcctttgaggaaattcaaatctgaaaaaaaaacaaagaaaacagtttcctgataattaaaaatcaaaccaaaagaagagaagttttctaagagataatttgtttttctttcttttctctttttttttggtttggttccttgtgctatcagtctattacaatccaatagaaaagagaa
position 144
XR_002658213.1 - Brassica napus (rape) - NCBI
PREDICTED: Prunus persica uncharacterized LOC109948414 (LOC109948414), ncRNA. (315 bp)
including 8 samples with support for all annotated introns" /db_xref="GeneID:109948414" ncRNA 1..315 /ncRNA_class="lncRNA" /gene="LOC109948414" /product="uncharacterized LOC109948414" /db_xref="GeneID:109948414" ORIGIN // gcaaagtcgacagtaatgtgcaacaatcaagagttggccgagatgcattttttaatttcatgtacaagaagagattgctaataaatggaggaaattaaaccttaaagagaaggctacatatggttctgccttggaaggttcgagtgggccaaggattaaaatatcaaccatgtaaataatatagggcctccaatttacggatatttcgggggatatattattatcgtcttaggtatcggaaaaaagaagaagacagatataggtattgaaacacataattttggtataaaactttcattaatgttatgtacatta
position 65
XR_002271033.1 - Prunus persica (peach) - NCBI
PREDICTED: Limulus polyphemus uncharacterized LOC111086280 (LOC111086280), ncRNA. (365 bp)
product="uncharacterized LOC111086280" /db_xref="GeneID:111086280" ORIGIN // gtggaatgaaatcagatttgaatttaaccacctgagcaaactactactttgaatgataagaatgaaccatcactactggaaacgttataccgaagcaaggatactctggaaaccatatttaggtttatcgatagagatgggtcaggtcttatctccatggaagaatttacagatgcatgccatctactaagtcaacacttagggacagctatgtcacaagaagagattgatgatttggccaagagtatagacattaacaaagacggatttattgatttcaatgagtttttggaagccttccgtcttgtagacaaggagccctcccctgtattacaggcaagagagtaaacattgttcttgtggta
position 217
XR_002611008.1 - Limulus polyphemus (Atlantic horseshoe crab) - NCBI
PREDICTED: Eurytemora affinis BBSome-interacting protein 1-like (LOC111709665), mRNA. (433 bp)
Region: BBIP10; pfam14777" /db_xref="CDD:317216" ORIGIN // attgtgacacctatatattttaagaaatatgtattaaaatctatagaatgagtgaagacaagaatagatttcctgaactagtaaaccctgttctaccaaaacgtggattagtttatcaagaaagtaatcctcaactagttctctgcaagccaaagcttctgcccctgaagtctatgaccctggagaagatggaaaggatgcagaaggaggcgaacgagaaggcgaaggaaatgcaagaagagattgagaaagagaaacaggctgggttcactgataccatagggtccgaagagaccgcagatgttttaacattagatgacgattagatgatacttcagaaaacactagaatctcaaaatcaattaattgcagttttttccagaaaagtgaactgaaaactttgttaattgtgttaatgggaaattctaacaaa
position 234
XM_023483453.1 - Eurytemora affinis - NCBI
Saccharomyces cerevisiae S288C ribosomal 40S subunit protein S23A (RPS23A), partial mRNA. (438 bp)
submitter REFERENCE 7 (bases 1 to 438) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (11-DEC-2009) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA atgggtaaaggtaagccaagaggtttgaactctgctagaaagctacgtgtccacagaagaaacaaccgttgggccgaaaacaactacaagaagagattgttgggtactgccttcaagtcttctccattcggtggttcttctcatgccaagggtatcgtcttggaaaaattgggtatcgaatccaagcaacctaactctgctatcagaaagtgtgttagagttcaattaatcaagaacggtaagaaggtcactgctttcgttccaaacgatggttgtttgaactttgtcgacgaaaatgatgaagtcttgctagcaggtttcggtagaaagggtaaagctaagggtgatattccaggtgttagattcaaggtcgttaaggtctctggtgtctcc...
position 87
NM_001181247.3 - Saccharomyces cerevisiae S288C - NCBI

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Redirect URI : http://ggrna.dbcls.jp/caagaagagattg
lang : en | div : | spe : | query_string : caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.074 | 0.074 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?to=0&format=json
0.111 | 0.037 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.116 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]