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2024-04-19 22:31:28, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Arabidopsis thaliana uncharacterized protein (AT2G18970), mRNA. (531 bp)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA tccaatctcactcaaaatctcctccatgttcatctcttctccacctggcaaaagcttctgcaattccttcaatctcttcttgatctctcctccttcttcttcttcgtcgctgtcttggtgtttttctccaccttgtctcttgctcgatctttctagaatctcggaaggagaactactagtgctaattggatcatcataaggggaagataatagcttctgttgcaagaaacggctccacgcgaattcttgagcagacaatgcgaaagccatgtctacttcatgtttcacgggttcttgtttggttggagagaaaagactcgctttctcttgtttataatttgcctctccatgtgaaatttgtttgcttcgtcggaactct...
position 70
Synonym: F19F24.17; F19F24_17
NM_127454.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana uncharacterized protein (AT2G02795), mRNA. (687 bp)
ttgtctccaccattctcaaagaacttgcttttagggttcttgccattctcctgctgtatttcaatcttggtgtataagattacatcactgctcaccaccacgagcctgctcgacgtgctgctggttgggcagcagataagcatcttgttcatgtgcatttgcggggtctctgcttttatgggattattcaattatatccaccggctctctgttggggtcttgaatgagccgcccaagcccaacgaagctatgacatccttgctcaatgcaatgaagaatgagcaagaaagtacacaatctcttcttgctgcagcaatgattttggctgtgactgagcctgagaatccaagcatcctcacgttggttaacgcattgaaagaacgttatgctaccgctccttccatttaacacttgaaacacccaatgtttgcttctgtttatgtattttcttctatctagttgactttttggatttttgtttcttaggattattgtgtttcaatcctttgactcttttcggatttgtggttttatttatgaatttgtgtttcttaggagtctcttgcgtttaacctatgtatgtctctg
position 394
NM_001335146.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana uncharacterized protein (AT2G40530), mRNA. (780 bp)
REMARK Protein update by submitter REFERENCE 4 (bases 1 to 780) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA tataaccacaacgctacaatctcttcttgaacctaaagaaaacaagaagaaagaaaaaattcatataaattctcttatattttttcacctttatattgaatggatgcaacgaagattaagtttgacgttatattactctccttcttactaattatctccggaattccttcgaatcttgggttgagtacaagtgtgagaggcactactagatcggagccggaagcctttcacggcggtaaattcccggcaatgaagatgaggaagttgatggcaccaaacatggaagttgattattcgagtgactattatgatggaggatcatc...
position 17
Synonym: T2P4.12; T2P4_12
NM_129615.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Bax inhibitor-1 family protein (AT4G15470), mRNA. (1218 bp)
gatattgactctgtctgtggtcggatctctaaccgcatacactttctgggctgcaaagaagggaaaagacttcagcttccttggacccattctcttcaccagcctcatcattcttgtagtgaccagcttcatccagatgttcttccctcttggcccgacttctgttgccgtatacggaggattcagtgccttggtattctgcggatacatagtctatgataccgacaacctcatcaagcgtttcacatatgacgaatacatcctagcatcagtagctctctacttggacatcctcaatctcttcttgaccatattgcgtatactgaggcaaggcgacaactgaaaggcataaaacgatgcttcagtgatgtgatccagtttataactataagagaatccaaaagcctttatgtgtgtatatctgatttctgtttggagaattaagtatatgatgctatgtggttaaacgattgatataaacaaaatcaagcaatgtcgattttcaacttcaaataaatttgttaattttggcggaattttgatgccttttgtcgtatccatttcgatattctgattgcttaagagcaaaagcaaacattg...
position 865
Synonym: AtLFG5; DL3775W; FCAALL.58; LFG5; LIFEGUARD 5
NM_117636.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana O-fucosyltransferase family protein (AT2G44500), mRNA. (2311 bp)
Panama Street, Stanford, CA, USA ctccctctctctctctttttctctctcacacgtttcttttttgtctctctccctgattcatcgccgtagctgtgtgaccgaacattgctgcgagttcctcaaaacccaaatctttcttcctcaaagactctgttttttctttcttcctttcttcaatggcgttatcgaaaaacagtaacagtaacagctttaacaagaagaaagtttcgtatatctcagtcccttctcagatcataaactctttatcatcttcctcattacaatctcttcttgtttctcccaagaaatcatcaagaagcaccaacagattcagcttctcttataggaaccctagaatctggttctttactctcttcctcgtctcactctttggaatgttgaaactcggtttcaacgttgacccaatctctctccctttctcacgttacccttgttcaacgacccaacaaccactaagcttcgacggagaacaaaacgctgcatcccatcttggtttggctcaagagccgattttgtctactgggtcatcgaattcgaatgcgattatacaattaaacggtggaaaga...
position 261
Synonym: F4I1.31
NM_201959.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana O-fucosyltransferase family protein (AT2G44500), mRNA. (2371 bp)
gactttgatcagacttcgcgttcccgccgcccatctccctctctctctctttttctctctcacacgtttcttttttgtctctctccctgattcatcgccgtagctgtgtgaccgaacattgctgcgagttcctcaaaacccaaatctttcttcctcaaagactctgttttttctttcttcctttcttcaatggcgttatcgaaaaacagtaacagtaacagctttaacaagaagaaagtttcgtatatctcagtcccttctcagatcataaactctttatcatcttcctcattacaatctcttcttgtttctcccaagaaatcatcaagaagcaccaacagattcagcttctcttataggaaccctagaatctggttctttactctcttcctcgtctcactctttggaatgttgaaactcggtttcaacgttgacccaatctctctccctttctcacgttacccttgttcaacgacccaacaaccactaagcttcgacggagaacaaaacgctgcatcccatcttggtttggctcaagagccgattttgtctactgggtcatcgaattcgaatgcgattatacaattaaacggtggaaag...
position 391
Synonym: F4I1.31
NM_130013.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana NAD(P)-binding Rossmann-fold superfamily protein (AT4G31530), mRNA. (4352 bp)
atcattcttgaatttctcacttggcggtgttcctttgaagcttccatatctcatgggcttaggcatgtaaagagaactgagtatcttctccaaagctaccacagtgtatctcacatacttgcttgaactcgcgtctttctcaaccaatggcccatagttttgcatatagcttctgtaaaccggcacaatagcctgaactatctgctggcaaactctatcccttaaatctttctctggtaagacccatgatgcttgcttcttatacatctcatcaaacgcatcattgaatgctttcaatctcttcttgacaagatcacgagctgtggcatgtccacccgagaaaagtatcagcccttctcggctcaagtggcttggaagcttaccccaactgtctctaaggaagacagtggcgtaatactctttgtactgatcatgttctttcagccacgaatctcctaaatgatccccaatatttgtaccctttaagttcttgtataaatgccagtgattattcataccgaagaaatgcgcaagcgtttgatccggatacgctttcatccatacatccagattctgctcaatggctttgattattcttaa...
position 2031
Synonym: F3L17.100; F3L17_100
NM_119302.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/at/comp%3acaagaagagattg
lang : en | div : | spe : at | query_string : comp:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.076 | 0.075 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Arabidopsis thaliana (thale cress)?to=0&format=json
0.092 | 0.016 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Arabidopsis thaliana (thale cress)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.093 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]