LOCUS       NM_203271               1785 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana ankyrin repeat protein (AKRP), mRNA.
ACCESSION   NM_203271
VERSION     NM_203271.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1785)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1785)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1785)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_203271.1.
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1785
                     /gene="AKRP"
                     /locus_tag="AT5G66055"
                     /gene_synonym="ankyrin repeat protein; EMB16; EMB2036;
                     EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036"
                     /note="A locus involved in embryogenesis. Mutations in
                     this locus result in embryo lethality."
                     /db_xref="Araport:AT5G66055"
                     /db_xref="GeneID:836737"
                     /db_xref="TAIR:AT5G66055"
     CDS             130..1209
                     /gene="AKRP"
                     /locus_tag="AT5G66055"
                     /gene_synonym="ankyrin repeat protein; EMB16; EMB2036;
                     EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH874977.1,INSD:EL220280.1,INSD:EL238002.1,
                     INSD:BP636032.1,INSD:AU238327.1,INSD:AV826046.1,
                     INSD:BP634792.1,INSD:EL153848.1,INSD:AW004311.1,
                     INSD:DR276603.1,INSD:EL320287.1,INSD:AV441775.1,
                     INSD:DR276607.1,INSD:EL248447.1,INSD:T88492.1,
                     INSD:AV521462.1,INSD:AV795108.1,INSD:BP778786.1,
                     INSD:EH881256.1,INSD:AV793392.1,INSD:AV548212.1,
                     INSD:EL002765.1,INSD:AA728437.1,INSD:BP625280.1,
                     INSD:AU229495.1,INSD:AV793530.1,INSD:EL032112.1,
                     INSD:DR276605.1,INSD:DR276601.1,INSD:EL017849.1,
                     INSD:EH918049.1,INSD:EL995044.1,INSD:BP593812.1,
                     INSD:EL189874.1,INSD:AV566793.1,INSD:DR276606.1,
                     INSD:DR276604.1,INSD:EH943378.1,INSD:EG439307.1,
                     INSD:BP561270.1,INSD:EH968745.1,INSD:BP588906.1,
                     INSD:DR276602.1"
                     /inference="similar to RNA sequence, mRNA:INSD:BX832616.1"
                     /note="ankyrin repeat protein (AKRP); CONTAINS InterPro
                     DOMAIN/s: Ankyrin repeat-containing domain
                     (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110);
                     BEST Arabidopsis thaliana protein match is: Ankyrin repeat
                     family protein (TAIR:AT5G40160.1); Has 35333 Blast hits to
                     34131 proteins in 2444 species: Archae - 798; Bacteria -
                     22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
                     0; Other Eukaryotes - 9610 (source: NCBI BLink)."
                     /codon_start=1
                     /product="ankyrin repeat protein"
                     /protein_id="NP_975000.1"
                     /db_xref="GeneID:836737"
                     /db_xref="TAIR:AT5G66055"
                     /db_xref="Araport:AT5G66055"
                     /translation="

MQSLSTPHTISLLLPRTSPSRLSPSLHSLAFPTRLRSLSYSSQTSILPDAGDDFIVGDCLVYEDGVFEDPYLDKEVTQVAKQERKKNRRGGAKRLDESEIEPENLVPEEWRDIQAEVNLTKKDKRKIAQEMEFGVRVEKKRQGLIPLRKVDLNDFLTYKEAKLAQLRPVILDKPGNFSDDSGASSDGETAVSSPSERVAPKNPRWAVYGKGFDHVAKFFNSDKYDPSDKKSDGPRKLLSKEEKFMLNSRNPDLAVATSKKWLPLHTLAACGEFYLVDSLLKHNLDINATDVGGLTVLHRAIIGKKQAITNYLLRESANPFVLDDEGATLMHYAVQTASAPTIKLLLLYNADINAQDRVG"

     misc_feature    order(910..912,922..927,934..942,946..951,961..963,
                     970..972,997..999,1003..1005,1009..1011,1021..1026,
                     1033..1041,1045..1050,1060..1062,1069..1071,1096..1098,
                     1102..1104,1108..1110,1120..1125,1132..1140,1144..1149,
                     1159..1161,1168..1170,1195..1197)
                     /gene="AKRP"
                     /locus_tag="AT5G66055"
                     /gene_synonym="ankyrin repeat protein; EMB16; EMB2036;
                     EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    910..999
                     /gene="AKRP"
                     /locus_tag="AT5G66055"
                     /gene_synonym="ankyrin repeat protein; EMB16; EMB2036;
                     EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    919..1197
                     /gene="AKRP"
                     /locus_tag="AT5G66055"
                     /gene_synonym="ankyrin repeat protein; EMB16; EMB2036;
                     EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036"
                     /note="Ankyrin repeats (3 copies); Region: Ank_2;
                     pfam12796"
                     /db_xref="CDD:432791"
     misc_feature    1003..1098
                     /gene="AKRP"
                     /locus_tag="AT5G66055"
                     /gene_synonym="ankyrin repeat protein; EMB16; EMB2036;
                     EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1102..1197
                     /gene="AKRP"
                     /locus_tag="AT5G66055"
                     /gene_synonym="ankyrin repeat protein; EMB16; EMB2036;
                     EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      

cgggaagtcaggcccatatgtttaagtaaggcccattagaaagtgaggcccattgaaattgtcggatactacatcagaggccggcgaggaggagaggagaaagctccgttattcaagattattccgataatgcagtcactctccaccccacacaccatctctcttcttctccccagaacctctccgtctcgtctttctccctctcttcactcccttgctttccccactcgattacggtctctttcctattcttctcaaacgtcgatcctccccgatgccggcgatgatttcattgtcggtgactgtctcgtctacgaggacggcgtcttcgaagacccttaccttgataaggaggtcactcaggttgcgaagcaggagcgcaagaagaatcggcgtggcggggctaagagattagatgaatccgagattgagcccgagaacctcgtgccagaggaatggagggatattcaggcggaggtgaatctgacgaagaaggacaagcgcaaaatagcgcaggagatggagttcggggttcgggtggagaagaagaggcaagggctaattccgctgaggaaagttgacttgaatgactttctcacgtacaaggaagccaagttggctcaattgaggcctgtcattctcgataaaccgggaaatttctccgacgacagtggagcgtcaagcgatggagagaccgctgtatcatctcccagcgagcgagtggctcctaagaaccctagatgggcagtttacggaaagggattcgaccacgttgccaagttcttcaatagcgacaagtacgatcccagcgacaagaaatccgacggccctcgaaagctgctttcaaaagaagagaagtttatgctcaatagccggaatcctgacctagccgttgccacatcaaaaaaatggcttcctcttcacacactggcagcatgtggagagttttatctggttgattccttgctaaagcacaatcttgatatcaatgcaaccgatgtgggcggcttgacagtacttcaccgagcaatcattggtaagaagcaggctattactaactacctgctgagggaatcggcaaatccatttgttcttgatgacgaaggtgcgaccttgatgcactatgctgtgcaaacagcatcagctcccacaataaaacttctcctactgtataacgctgatataaacgctcaggacagggtaggatgatgtcaagcattcattgtaagacaacatcattgttgatcaggtggttgacaatttggcactgggttttcaggacgggtggactccactgcacgttgcagtacaggccagaagaagcgacattgtaaagcttcttttgataaaaggggcggacatagaagtgaagaacaaggatgggttaactccgcttgggctttgcctctaccttggaagagagataaggacgtatgaggtgatgaagctgttgaaagagtttccacttagcagacacaagaagagattggtaacaacagatgaagatattgaatagtcctttcaatttcagcttgaagtacactcacttatgagaacctgagaaaaggagatggaggtaaaggtgatgattagggcattggaacctcggagtcggagtgggtccactgtctcacttccttaaatttggtttgctgttagtcttatccatcgattttggatatttatcacaacttgatccattcttaaagaaaatatctgaaaataaataaaaagtaatacatatatatatatatatatattatttataacagtctgtgaatggat

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