LOCUS       NM_130013               2371 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana O-fucosyltransferase family protein
            (AT2G44500), mRNA.
ACCESSION   NM_130013
VERSION     NM_130013.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 2371)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2371)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2371)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_130013.3.
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..2371
                     /locus_tag="AT2G44500"
                     /gene_synonym="F4I1.31"
                     /db_xref="Araport:AT2G44500"
                     /db_xref="GeneID:819057"
                     /db_xref="TAIR:AT2G44500"
     CDS             286..2007
                     /locus_tag="AT2G44500"
                     /gene_synonym="F4I1.31"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP597770.1,INSD:BP560962.1,INSD:BP798053.1,
                     INSD:EL128245.1,INSD:AV820246.1,INSD:CB255170.1,
                     INSD:DR354621.1,INSD:BP824002.1,INSD:EH847016.1,
                     INSD:EL260072.1,INSD:BP799479.1,INSD:BE520571.1,
                     INSD:BP800697.1,INSD:BP608940.1,INSD:AV537740.1,
                     INSD:DR363389.1,INSD:AV547353.1,INSD:BE520246.1,
                     INSD:ES056039.1,INSD:BP601182.1,INSD:CD531677.1,
                     INSD:BP592594.1,INSD:BX834195.1,INSD:EL184113.1,
                     INSD:DR383531.1,INSD:BE521417.1,INSD:BE520245.1,
                     INSD:CD534306.1,INSD:BE521418.1,INSD:AV534254.1,
                     INSD:BP816644.1,INSD:BP567288.1,INSD:BP636884.1,
                     INSD:N96361.1,INSD:BP651721.1,INSD:EL189954.1,
                     INSD:BP856757.1,INSD:ES174535.1,INSD:BP619334.1,
                     INSD:AV557930.1,INSD:ES207054.1,INSD:BX836997.1,
                     INSD:BX837994.1,INSD:EL215602.1,INSD:AV819611.1,
                     INSD:BP606438.1,INSD:EH833376.1,INSD:EL095447.1,
                     INSD:ES190524.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AK220874.1,INSD:AY093801.1,INSD:AY050384.1,
                     INSD:AF370605.1"
                     /note="O-fucosyltransferase family protein; CONTAINS
                     InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase
                     (InterPro:IPR019378); BEST Arabidopsis thaliana protein
                     match is: O-fucosyltransferase family protein
                     (TAIR:AT3G07900.1); Has 821 Blast hits to 820 proteins in
                     30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
                     0; Plants - 820; Viruses - 0; Other Eukaryotes - 1
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="O-fucosyltransferase family protein"
                     /protein_id="NP_181978.1"
                     /db_xref="Araport:AT2G44500"
                     /db_xref="GeneID:819057"
                     /db_xref="TAIR:AT2G44500"
                     /translation="

MALSKNSNSNSFNKKKVSYISVPSQIINSLSSSSLQSLLVSPKKSSRSTNRFSFSYRNPRIWFFTLFLVSLFGMLKLGFNVDPISLPFSRYPCSTTQQPLSFDGEQNAASHLGLAQEPILSTGSSNSNAIIQLNGGKNETLLTEGDFWKQPDGLGFKPCLGFTSQYRKDSNSILKNRWKYLLVVVSGGMNQQRNQIVDAVVIARILGASLVVPVLQVNVIWGDESEFADIFDLEHFKDVLADDVHIVSSLPSTHVMTRPVEEKRTPLHASPQWIRAHYLKRINRERVLLLRGLDSRLSKDLPSDLQKLRCKVAFQALRFSPRILELGNKLASRMRNQGQYLSLHLRMEKDVWVRTGCLPGLTPEYDEIVNSERERHPELLTGRSNMTYHERKLAGLCPLTALEVTRLLKALEAPKDARIYWAGGEPLGGKEVLEPLTKEFPQFYNKHDLALPGELEPFANKASVMAAIDYIVCEKSDVFIPSHGGNMGHALQGQRAYAGHKKYITPNKRQMLPYFMNSSLPESDFNRIVKDLHRESLGQPELRMSKAGKDVTKHPVPECMCSDRQQQEQQSDA"

     misc_feature    823..1791
                     /locus_tag="AT2G44500"
                     /gene_synonym="F4I1.31"
                     /note="GDP-fucose protein O-fucosyltransferase, plant
                     specific subfamily; Region: O-FucT_plant; cd11299"
                     /db_xref="CDD:211385"
     misc_feature    order(847..858,1315..1317,1321..1323,1549..1557,
                     1681..1683,1738..1746)
                     /locus_tag="AT2G44500"
                     /gene_synonym="F4I1.31"
                     /note="GDP-Fucose binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:211385"
ORIGIN      

aattaacaaaacagttaaacaaattcaaaataaaaactgccatgtggtctctttcttctctgtttctctctcccttcctttaagaacgcgtttgcagactttgatcagacttcgcgttcccgccgcccatctccctctctctctctttttctctctcacacgtttcttttttgtctctctccctgattcatcgccgtagctgtgtgaccgaacattgctgcgagttcctcaaaacccaaatctttcttcctcaaagactctgttttttctttcttcctttcttcaatggcgttatcgaaaaacagtaacagtaacagctttaacaagaagaaagtttcgtatatctcagtcccttctcagatcataaactctttatcatcttcctcattacaatctcttcttgtttctcccaagaaatcatcaagaagcaccaacagattcagcttctcttataggaaccctagaatctggttctttactctcttcctcgtctcactctttggaatgttgaaactcggtttcaacgttgacccaatctctctccctttctcacgttacccttgttcaacgacccaacaaccactaagcttcgacggagaacaaaacgctgcatcccatcttggtttggctcaagagccgattttgtctactgggtcatcgaattcgaatgcgattatacaattaaacggtggaaagaacgagactttgttaacggaaggtgatttctggaagcaacctgatgggttagggtttaagccctgtttgggatttacaagtcaatatagaaaagatagcaattcgattttgaagaacagatggaagtatttgcttgttgttgtctctggtgggatgaatcagcaaaggaatcagattgttgatgctgttgtgatcgctaggatccttggagcttctttagttgttcctgttttgcaggttaatgtcatttggggagacgaaagtgaatttgcggatatattcgatttggagcatttcaaggatgttttagcagatgatgttcatatagtttcgtctttaccttctacacatgttatgacgagacctgttgaagagaagaggactccacttcatgcttctcctcaatggattcgtgctcattatcttaagcgaattaacagagaaagagttttacttctccgtggactcgattcaagactctccaaagacctcccttcagatcttcagaaactccgatgcaaggttgctttccaagcgcttagattttctccgaggattcttgaactcggtaataaactagcttcaagaatgcgtaaccaaggacagtatctctcacttcatctaagaatggagaaagatgtttgggttagaactggttgtctccctggtttaactcccgagtacgatgaaatagtcaacagcgaaagagaacgacaccctgagcttcttaccggtagatcaaacatgacttatcacgagagaaaacttgccggtttatgccctttaactgctctagaagtcacaaggctgcttaaagcattagaagctccaaaggatgcgagaatctattgggcaggaggagagcctctaggaggaaaagaggttttggagccactaactaaagaattccctcagttctacaacaagcacgatcttgctttacctggcgagcttgaaccatttgccaacaaagcttcggttatggctgctatagactacattgtctgcgaaaagagcgatgttttcataccgtctcatggaggaaatatgggacacgcgttacaagggcaaagagcttacgctggtcacaagaaatacatcactcctaataagagacagatgcttccttatttcatgaactcgtcgcttcctgaatcggattttaacagaattgtgaaagatcttcatcgagaatcgctaggacagccggagttgagaatgagcaaagctggtaaagatgttacaaaacatcctgttccagagtgtatgtgctcggatagacaacaacaagaacaacagtccgatgcttaagccttgaaggacattttggacattatttggtgcgcggaaaatgaagaagacgccgattttttcccgatcacccggaagattgattgaggaagacgattcatggtggttcgtgcgatattcttttagttcgggttttaatctgatcattttttcaaaatcttttggagtaaatatatattcgtttcaactgaggttatttttttcttacatgtttttacgatatacgtgagaagtagaatagtgaggttataagatatgattctttgattcgatttatttgggctgtaattatatattacagagtttgtatacggttctagttgtacttgtactataaataaagcaacagttaatcatctcctcc

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