LOCUS       NM_129697               1532 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RNA polymerase II fifth largest subunit, D
            (RPB5D), mRNA.
ACCESSION   NM_129697
VERSION     NM_129697.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1532)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 1532)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1532)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1532)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_129697.2.
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..1532
                     /gene="RPB5D"
                     /locus_tag="AT2G41340"
                     /gene_synonym="''RNA polymerase II fifth largest subunit;
                     D; D''; F13H10.11; F13H10_11; RNA polymerase II fifth
                     largest subunit"
                     /note="NRPE5-like protein of unknown function; homologous
                     to budding yeast RPB5"
                     /db_xref="Araport:AT2G41340"
                     /db_xref="GeneID:818732"
                     /db_xref="TAIR:AT2G41340"
     CDS             267..923
                     /gene="RPB5D"
                     /locus_tag="AT2G41340"
                     /gene_synonym="''RNA polymerase II fifth largest subunit;
                     D; D''; F13H10.11; F13H10_11; RNA polymerase II fifth
                     largest subunit"
                     /inference="similar to RNA sequence, mRNA:INSD:AY078926.1"
                     /note="''RNA polymerase II fifth largest subunit, D''
                     (RPB5D); FUNCTIONS IN: DNA-directed RNA polymerase
                     activity, DNA binding; INVOLVED IN: transcription; LOCATED
                     IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED
                     DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA
                     polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA
                     polymerase, subunit H/Rpb5 C-terminal
                     (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5
                     subunit (InterPro:IPR014381); BEST Arabidopsis thaliana
                     protein match is: Eukaryotic rpb5 RNA polymerase subunit
                     family protein (TAIR:AT3G57080.1); Has 971 Blast hits to
                     971 proteins in 339 species: Archae - 231; Bacteria - 0;
                     Metazoa - 155; Fungi - 216; Plants - 119; Viruses - 8;
                     Other Eukaryotes - 242 (source: NCBI BLink)."
                     /codon_start=1
                     /product="RNA polymerase II fifth largest subunit, D"
                     /protein_id="NP_181665.1"
                     /db_xref="Araport:AT2G41340"
                     /db_xref="GeneID:818732"
                     /db_xref="TAIR:AT2G41340"
                     /translation="

MEGKGKEIVVGHSISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCVS"

     misc_feature    306..917
                     /gene="RPB5D"
                     /locus_tag="AT2G41340"
                     /gene_synonym="''RNA polymerase II fifth largest subunit;
                     D; D''; F13H10.11; F13H10_11; RNA polymerase II fifth
                     largest subunit"
                     /note="DNA-directed RNA polymerase II subunit family
                     protein; Provisional; Region: PLN03111"
                     /db_xref="CDD:215582"
ORIGIN      

cttatctcttctagctattttagtatggcttaccatttttccaaaaaccagtgtcactaaagttacagaacaatcgcctttgactacatcacctgcttgatcattggctaccatccaagtctgtttgtaaacttcatccgctgtcacggtaaaaacgtcacgggtaaactgattattgaaaacgacaacgggtcttatcatcttcaaacccctcacattactcaagctttgcttccttccccgagaccgagagagagagagagacgatggaggggaaagggaaagagatagtggttggacattccattagtaaatcaagtgtagagtgtcacaaatattacctggcacgtcgaaccaccatggagatgctccgagacagaggatacgatgtctccgacgaagatattaacctctccctccagcaatttcgagcgctctatggggaacatcctgacgtagatctacttcgtatctcagccaaacatcgctttgattcttcgaaaaagatctcggtagtgttttgtggaactggtatagttaaagtcaatgcgatgcgcgtcattgcagcagatgtgcttagccgagaaaatataaccggactgatactggttttgcaaagtcatataacgaaccaagctcttaaagccgttgaacttttctcctttaaggtcgagttattcgagattaccgatttgttggttaacgtaagcaaacatgtcttgaggccaaaacatcaggttctgaacgataaagagaaggaatcacttctcaagaagttcagtattgaggagaaacaacttcctcggttatcgagcaaagacccgattgtgcgatactatggactagagacagggcaagtcatgaaggtcacatacaaagacgagctcagtgagtcgcatgttacataccgatgcgtttcttaaactcgttttgtttatattttcagctctttctttgtgtagcaatttatctgtaacatgttttgatgtaaaaacctgtaatgtgtttcttgtggtctctaaaccaaacaattttgatagttaattaatgtgtggttaacataaatacacaactctgtttaatagtttacaaaaacatagaaagcttggtcaaaacaaaacaatggtcaactatggacgatggtcgaatctggctgattcatgtttgacccatgagttgactttctcagcttcatggccaagtctttgctcctcccgtctggccgccttaagctgatgctcttgctccttcacggaaaaggtgcttgtgtccgatagatacttgtcgtcgccggtttgccacctccggtcgctagtgctccccatcgtactacgtctggtgctatctggatcgcgagaacagcacaaacttgatcccatgtggttcaaaactaaaatctttgatgaaaagaattattcagatacgaaaatagatgaaagtttaagaacaaatgagatagagacagaagggttggtttagtgttggaccaaattatgtatttgctgaaataattagtggttttgaaatttttt

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