LOCUS       NM_125246               1137 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RAN binding protein 1 (RANBP1), mRNA.
ACCESSION   NM_125246
VERSION     NM_125246.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1137)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1137)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1137)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_125246.3.
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1137
                     /gene="RANBP1"
                     /locus_tag="AT5G58590"
                     /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1"
                     /note="Encodes a Ran-binding protein 1 homolog (RanBP1)."
                     /db_xref="Araport:AT5G58590"
                     /db_xref="GeneID:835973"
                     /db_xref="TAIR:AT5G58590"
     CDS             222..881
                     /gene="RANBP1"
                     /locus_tag="AT5G58590"
                     /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:CB258083.1,INSD:DR368251.1,INSD:BP862543.1,
                     INSD:DR368248.1,INSD:EG456099.1,INSD:BP829690.1,
                     INSD:ES119939.1,INSD:DR368246.1,INSD:EL033621.1,
                     INSD:DR232250.1,INSD:DR335649.1,INSD:ES011828.1,
                     INSD:BP592124.1,INSD:EL272938.1,INSD:EG520540.1,
                     INSD:BP857275.1,INSD:ES162409.1,INSD:BP642495.1,
                     INSD:ES148222.1,INSD:EL311840.1,INSD:EH884634.1,
                     INSD:EH911258.1,INSD:DR232249.1,INSD:AV564340.1,
                     INSD:AV814883.1,INSD:EH869895.1,INSD:EL288915.1,
                     INSD:CB252656.1,INSD:ES209102.1,INSD:BP660647.1,
                     INSD:AV826391.1,INSD:BP575645.1,INSD:CB253147.1,
                     INSD:ES172946.1,INSD:BP666358.1,INSD:BP668148.1,
                     INSD:BP586175.1,INSD:EL287839.1,INSD:DR368247.1,
                     INSD:EL282508.1,INSD:EH969297.1,INSD:EG456098.1,
                     INSD:DR368252.1,INSD:EL314978.1,INSD:AI997068.1,
                     INSD:EL250713.1,INSD:DR368250.1,INSD:EG515380.1,
                     INSD:DR368249.1,INSD:AV810429.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY050947.2,INSD:BT024924.1,INSD:U62742.1"
                     /note="RAN binding protein 1 (RANBP1); FUNCTIONS IN:
                     protein binding; INVOLVED IN: protein import into nucleus,
                     translocation; LOCATED IN: cellular_component unknown;
                     EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
                     growth stages; CONTAINS InterPro DOMAIN/s: Ran binding
                     protein 1 (InterPro:IPR000156), Pleckstrin homology-type
                     (InterPro:IPR011993); BEST Arabidopsis thaliana protein
                     match is: Pleckstrin homology (PH) domain superfamily
                     protein (TAIR:AT2G30060.1); Has 1560 Blast hits to 1231
                     proteins in 240 species: Archae - 0; Bacteria - 8; Metazoa
                     - 836; Fungi - 365; Plants - 158; Viruses - 15; Other
                     Eukaryotes - 178 (source: NCBI BLink)."
                     /codon_start=1
                     /product="RAN binding protein 1"
                     /protein_id="NP_200667.2"
                     /db_xref="GeneID:835973"
                     /db_xref="TAIR:AT5G58590"
                     /db_xref="Araport:AT5G58590"
                     /translation="

MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSVEENISEEKAKEAEEKEPAKEDKETKKEKVEEEKKTEAST"

     misc_feature    291..692
                     /gene="RANBP1"
                     /locus_tag="AT5G58590"
                     /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1"
                     /note="Ran-binding domain; Region: RanBD_RanBP1; cd13179"
                     /db_xref="CDD:270000"
     misc_feature    order(324..329,333..344,381..383,387..389,393..395,
                     414..425,474..476,480..482,486..491,495..509,516..524,
                     546..557,576..578,582..584,594..596,603..605,609..611,
                     621..623,633..635)
                     /gene="RANBP1"
                     /locus_tag="AT5G58590"
                     /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1"
                     /note="Ran#RanBP1#RanGAP complex [polypeptide binding];
                     other site"
                     /db_xref="CDD:270000"
     misc_feature    order(324..329,336..344,369..371,387..389,393..395,
                     408..425,435..437,468..470,474..476,480..482,486..509,
                     516..524,546..557,564..572,576..578,582..584,594..596,
                     615..617,621..623,627..629,633..635)
                     /gene="RANBP1"
                     /locus_tag="AT5G58590"
                     /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1"
                     /note="CRM1-RanBP1-RanGTP complex [polypeptide binding];
                     other site"
                     /db_xref="CDD:270000"
ORIGIN      

accaaaatcatgaattgtcgtatagggccttaatgggcttaaatgaccgagataatgacctgttagcccactagagataattcagaagcctaactttggatataaagtttaaaaaccctggttccagttttttcttctggttctcgaaacttcttctcccaaattgaacaaccaaagaagttgcagagcacacacacacactttcaagtttcaatacagagatggcgagcactgagccagagcgtgagaaccgtgaagatgaaaccgaagtcaacgaagatgaagacaccggagctcaggtagctccgatcgttaggcttgaagaggttgcagtcaccaccggcgaagaagatgaagacgccgtcctcgatctgaaatcgaagatgtatcgattcgataaagaagggaaccaatggaaggagagaggagctggaactgtgaagttattgaagcataaggaaactggaaaagttcgtcttgttatgagacaatctaaaaccctaaagatctgtgccaatcacctcatttcgtctgggatgagtgttcaggaacatagtgggaatgaaaagtcttgtttatggcacgctactgatttctccgacggcgagttgaaagatgagcttttctgcattcgatttgcttccattgagaattgcaaaacatttatggagaagttcactgaaatagctgaaagccagcaagtagggaaagagagcacccagggcgacgaggctgctggtttaatagagaatctttcggttgaggaaaatataagtgaggagaaagccaaggaagcagaagagaaagagcctgcaaaggaagataaagaaacaaaaaaggagaaggtagaagaagagaagaaaacagaggcaagcacttaagtgatcaaattaaaattggttgttggcatcactaagtgtgctttgctttattttaatatattatacttggcactgaacatgatggtagcttcaaaagtttgagtctttgcgctgtgttagagaaagagaatcttaagatttttttttatgttgttgctgtgtaagtgtttgactattgtgtcgtctctttactgtgtcaatttggtttaagataatagtattcggcatcaaattagtatccttgctttcatcttca

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