LOCUS       NM_124777                984 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana homeobox protein 52 (HB52), mRNA.
ACCESSION   NM_124777
VERSION     NM_124777.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 984)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 984)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 984)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_124777.4.
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..984
                     /gene="HB52"
                     /locus_tag="AT5G53980"
                     /gene_synonym="ATHB52; homeobox protein 52; K19P17.15;
                     K19P17_15"
                     /note="Encodes a homeodomain leucine zipper class I
                     (HD-Zip I) protein."
                     /db_xref="Araport:AT5G53980"
                     /db_xref="GeneID:835481"
                     /db_xref="TAIR:AT5G53980"
     CDS             205..675
                     /gene="HB52"
                     /locus_tag="AT5G53980"
                     /gene_synonym="ATHB52; homeobox protein 52; K19P17.15;
                     K19P17_15"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR751471.1,INSD:DR750086.1,INSD:DR750926.1,
                     INSD:AU228785.1,INSD:AA041003.1,INSD:DR750609.1,
                     INSD:DR750610.1,INSD:AI994947.1,INSD:AU237700.1,
                     INSD:N96528.1,INSD:DR750925.1,INSD:T45785.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT021920.1,INSD:AK229211.1,INSD:BT015927.1"
                     /note="homeobox protein 52 (HB52); FUNCTIONS IN:
                     sequence-specific DNA binding transcription factor
                     activity; INVOLVED IN: response to blue light, regulation
                     of transcription, DNA-dependent, response to absence of
                     light; LOCATED IN: nucleus; EXPRESSED IN: root, flower;
                     EXPRESSED DURING: seedling growth; CONTAINS InterPro
                     DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox,
                     conserved site (InterPro:IPR017970), Homeodomain-like
                     (InterPro:IPR009057), Homeodomain-related
                     (InterPro:IPR012287); BEST Arabidopsis thaliana protein
                     match is: homeobox 3 (TAIR:AT5G15150.1); Has 1807 Blast
                     hits to 1807 proteins in 277 species: Archae - 0; Bacteria
                     - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
                     0; Other Eukaryotes - 339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="homeobox protein 52"
                     /protein_id="NP_200209.1"
                     /db_xref="GeneID:835481"
                     /db_xref="TAIR:AT5G53980"
                     /db_xref="Araport:AT5G53980"
                     /translation="

MENSQSQGKNKKKRLTQDQVRQLEKCFTMNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRARFKTQSLEVQHCTLQSKHEAALSDKAKLEHQVQFLQDELKRARNQLALFTNQDSPVDNSNLGSCDEDHDDQVVVFDELYACFVSNGHGSSSTSWV"

     misc_feature    order(229..243,247..249,298..300,316..318,355..357,
                     361..366,373..378,382..390,394..399)
                     /gene="HB52"
                     /locus_tag="AT5G53980"
                     /gene_synonym="ATHB52; homeobox protein 52; K19P17.15;
                     K19P17_15"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    235..396
                     /gene="HB52"
                     /locus_tag="AT5G53980"
                     /gene_synonym="ATHB52; homeobox protein 52; K19P17.15;
                     K19P17_15"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(235..237,244..246,364..366,373..378,385..387)
                     /gene="HB52"
                     /locus_tag="AT5G53980"
                     /gene_synonym="ATHB52; homeobox protein 52; K19P17.15;
                     K19P17_15"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

cttctatagtatatgttaaacttatatcactagaaacttatcttagttatgaatacaaagtttgtgttaattttgtttgcttatcttttacatagaacaccatcaatgttttaagtatgagtgcgtgtgtgtatatatacacatccttagccacaacgttgtacatagctcacaacaaaagaaaaaacaaaaaagaagagaaaaatggagaattctcagagtcagggtaaaaacaagaagaagaggctaacacaagatcaagttagacaactggagaagtgcttcactatgaacaagaagcttgagccagatctgaaacttcaactgtcgaaccagcttggtctacctcaaagacaagtcgctgtctggttccaaaacaagcgagccaggttcaagactcagtctcttgaggtccaacactgcactcttcagtccaagcacgaagcagctctctccgacaaggcaaagttagagcatcaagtgcagtttctccaagatgagctgaagagagcaaggaatcagcttgctctgttcacaaatcaagattctcctgttgataattctaatcttggttcttgtgatgaagatcatgatgatcaagtggtggtattcgacgagctttacgcttgctttgttagcaatggacatggatcttcatcaacctcatgggtctgattctgtttcgacgcagacaagattccaatatatatagtcttgtctctgttttgtttcgtttgatctgtttctctttgtctgaatagatttaaaatttgtaattaaagtcattcagacattcactaatacaaagagatgattttcttcatttcttgttatggttataagaattgcaatgttgtaacaacacaagaaaccaacaactactccatggtctagtttcatcttaccttattgatcacatcaagtcttttcattcaatatttagtatcatgcactagattatgcaataattcataaatctagtgt

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