2024-03-29 16:26:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_120663 1780 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana RING/U-box superfamily protein (ATL43), mRNA. ACCESSION NM_120663 VERSION NM_120663.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1780) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 1780) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1780) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1780) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_120663.2. FEATURES Location/Qualifiers source 1..1780 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..1780 /gene="ATL43" /locus_tag="AT5G05810" /gene_synonym="MJJ3.23; MJJ3_23" /db_xref="Araport:AT5G05810" /db_xref="GeneID:830466" /db_xref="TAIR:AT5G05810" CDS 229..1452 /gene="ATL43" /locus_tag="AT5G05810" /gene_synonym="MJJ3.23; MJJ3_23" /inference="Similar to RNA sequence, EST:INSD:ES130044.1,INSD:EH979131.1,INSD:EL091008.1, INSD:ES194414.1,INSD:ES100220.1,INSD:ES047035.1" /inference="similar to RNA sequence, mRNA:INSD:BX829937.1,INSD:BT020620.1,INSD:BT021932.1" /note="ATL43; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G20030.1); Has 8903 Blast hits to 8881 proteins in 285 species: Archae - 0; Bacteria - 2; Metazoa - 2283; Fungi - 641; Plants - 4839; Viruses - 72; Other Eukaryotes - 1066 (source: NCBI BLink)." /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="NP_196200.3" /db_xref="GeneID:830466" /db_xref="TAIR:AT5G05810" /db_xref="Araport:AT5G05810" /translation="
MSSSSLILLFSTLSLFLNVSLADNHTAVVITTSDTPPPLPPPSPPPRHNFTSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSVNNNPPGLTRFIPVSRISGRHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVNDAGEEKSESVAVNCLDRLQRKDGLLLIPNRESFEGRFEHRIIISGGNRDDQRWSEVRPSDLLYLRSEMILSDCRKLAAAEGGRDVINGRSVSELTGIERRRRWGGEPRQRQATAVISRWLAWSHRASASSIV"
misc_feature 661..792 /gene="ATL43" /locus_tag="AT5G05810" /gene_synonym="MJJ3.23; MJJ3_23" /note="RING finger, H2 subclass, found in rice E3 ubiquitin-protein ligase EL5 and similar proteins; Region: RING-H2_EL5-like; cd16461" /db_xref="CDD:438124" misc_feature 745..762 /gene="ATL43" /locus_tag="AT5G05810" /gene_synonym="MJJ3.23; MJJ3_23" /note="putative active site [active]" /db_xref="CDD:438124" ORIGIN
aaatttgtaaggcatgaaagatgaaagaagggagtcatgtttttaatgcatcctctttgtcctcattcactttgttttctttcccttttataaaaacctctctccctatctcacacactcacaaaagtgtctcccttattttcaggcacttcaaaataaatatacgaaaataaaataaccatttcttaagtctaaagaccttctctttcaactagaagcctttaagccatgtcttcttcttccttgatacttctcttctctactctctctctctttctcaatgtctcactcgcagacaatcacacggcggttgttataacaacctcagatactccaccgccacttcctccgccttctccaccgccacggcataacttcacttcctctctcatgcccggaatcgcagtcgttatcgccgtcctcactgcgtttttctctctcactttcttacttctcctctacgtcaaacactgtaaacgacgaaacggcagcgtttacgtaaaccacccgcagcgtttcgcaatcactagatacggaggaggatattacaacggtggaggagtagtaggaggaaggaaaaactccggtatagaccggtccgtgattgaatctttaccggttttccggtttggtgcattaagcggtcacaaggatggtttagagtgcgccgtgtgtctcgctcggttcgaaccgacggaagttctgaggttattgccgaaatgtaaacacgccttccacgtggaatgtgttgacacgtggcttgacgctcactccacttgcccgctttgccgttaccgggtcgacccggaagatatactcttgatcggtgattgtaactcctggttcgagctccagttctctaaagatgaatcaaacagtgttaataataatcctcccggtttaacccggtttattccggttagtcgaatttccggtcgtcattcctcggctggtgaacgagcgagtcgactcaacgagattagaacatcttcgtcgtataaatcgaatccgatgtcgtttcggagatcactcgatagctctctgaaagttaacgacgccggcgaggagaaatcggaatctgtcgccgttaattgcttggatcgtctacagagaaaagacggattgttgttgattccgaatcgggagagctttgaggggagatttgagcaccggataattatctccggcgggaatcgagacgatcagaggtggagcgaagtaaggccgtcggatcttttgtatttacgatcagagatgatactcagcgattgccggaaattagctgcggcggagggtggcagagatgtaattaacgggagaagtgtgtcggagttaacgggaattgagagacggaggagatggggaggagagccgagacaacgacaagccacggcggtgatttcgaggtggctcgcttggtcccaccgtgcctccgcttccagcattgtttaaaatttatattatgatccttttagttttgttttataacagttttggccggtttagttttgttctataacatttagcccaaactaatttattagaggaatgcaacaatggcaggtagggataaattagtgttgttcttttttttttttgaaatgcgaattttttggagtatgcacgagtgcaaggaagcacaaatgatttctttttgtattttaatttttgaggaaatattaaggaaagtgaaaggttgagttttttaaaattaatgtctttcttggtgtaataaagggcgagtattggggatctgataactaagtttaaatagaaaaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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