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2024-04-29 15:41:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_119303               3080 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana exocyst subunit exo70 family protein G1
            (EXO70G1), mRNA.
ACCESSION   NM_119303
VERSION     NM_119303.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 3080)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 3080)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3080)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 3080)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
            
            On Sep 12, 2016 this sequence version replaced NM_119303.2.
FEATURES             Location/Qualifiers
     source          1..3080
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            1..3080
                     /gene="EXO70G1"
                     /locus_tag="AT4G31540"
                     /gene_synonym="ATEXO70G1; exocyst subunit exo70 family
                     protein G1; F3L17.110; F3L17_110"
                     /note="A member of EXO70 gene family, putative exocyst
                     subunits, conserved in land plants. Arabidopsis thaliana
                     contains 23 putative EXO70 genes, which can be classified
                     into eight clusters on the phylogenetic tree."
                     /db_xref="Araport:AT4G31540"
                     /db_xref="GeneID:829281"
                     /db_xref="TAIR:AT4G31540"
     CDS             663..2726
                     /gene="EXO70G1"
                     /locus_tag="AT4G31540"
                     /gene_synonym="ATEXO70G1; exocyst subunit exo70 family
                     protein G1; F3L17.110; F3L17_110"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV529907.1,INSD:DR243477.1,INSD:EG506256.1,
                     INSD:ES193973.1,INSD:EG506254.1,INSD:EH871368.1,
                     INSD:EL043235.1,INSD:EL101671.1,INSD:DR243473.1,
                     INSD:EH979302.1,INSD:EH943304.1,INSD:ES093663.1,
                     INSD:DR243475.1,INSD:ES188422.1,INSD:AV785505.1,
                     INSD:DR243474.1,INSD:AV524080.1,INSD:EH976823.1,
                     INSD:EL215830.1,INSD:BP604167.1,INSD:N96430.1,
                     INSD:BP618308.1,INSD:EL126224.1,INSD:BE524547.1,
                     INSD:DR378586.1,INSD:DR243476.1,INSD:ES128099.1,
                     INSD:EL253499.1,INSD:EL100375.1,INSD:ES104860.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BX826595.1,INSD:BT004546.1,INSD:AY222338.1,
                     INSD:AY139762.1"
                     /note="exocyst subunit exo70 family protein G1 (EXO70G1);
                     INVOLVED IN: exocytosis, vesicle docking involved in
                     exocytosis; LOCATED IN: cytosol, exocyst; EXPRESSED IN: 20
                     plant structures; EXPRESSED DURING: 8 growth stages;
                     CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit
                     (InterPro:IPR004140); BEST Arabidopsis thaliana protein
                     match is: exocyst subunit exo70 family protein G2
                     (TAIR:AT1G51640.1); Has 805 Blast hits to 799 proteins in
                     127 species: Archae - 0; Bacteria - 1; Metazoa - 136;
                     Fungi - 99; Plants - 561; Viruses - 0; Other Eukaryotes -
                     8 (source: NCBI BLink)."
                     /codon_start=1
                     /product="exocyst subunit exo70 family protein G1"
                     /protein_id="NP_194882.2"
                     /db_xref="GeneID:829281"
                     /db_xref="TAIR:AT4G31540"
                     /db_xref="Araport:AT4G31540"
                     /translation="
MMAESTGVDRGIQSLIAARKSLKLSLEKSKAIGLALGKTGPRFDEIEQRLPLLEAAVRPIRADGEALKDVGGNINRAVGPAAAVLKVFDAVHGLEKSLLSDPKNDLSSYLSVLKRLEEALKFLGENCGLAIQWLEDIVEYLDDHHVADEKYLSNLKKSLRGLSEFHNDRGGGEEKERSQLRLDGGLRNAALDKLENEFRRLLKDNSVPLPMASPSSLGDQACIAPSQLPVTVIHKLQAILGRLRANNRLDKCISIYVEVRSLNVRASLQALDLDYLDISVSEFNDVQSIEGYIAQWGNHLEFAVKHLFEAEFKLCNDVFERLGLNVWMDCFSKIAAQAGMLAFLQFGKTVTDSKKDPIKLLKLLDIFTSLNKLRADFNRLFGGAACIEIQNFTRDLIKRIIDGAAEIFWELLVQVEIQKQTPPPSDGGVPRLVSFVTDYCNKLIGDKYKSTLTQVLLIHKSWRSERFQDNQLMVEVLRIIKAIEQNLDVWMKAYPDQTLAHFFGMNNHWHLYKNLKGTNIGDHLGDSWLKEHDQYKEYYATVFLRDSWGKLPSHLSREGLILFSGGHATARDLVKKRLKAFNDAFDEMYKKQASWVLPEKDLRDRVCQQIVQAIVPVYRSYMQNYGPLVEKDASSSKYVRYTVVALEKILSSLYMPKPMRYGSFKGTPPSEKFKNDVDLRRTTSAVV"
     misc_feature    1545..2618
                     /gene="EXO70G1"
                     /locus_tag="AT4G31540"
                     /gene_synonym="ATEXO70G1; exocyst subunit exo70 family
                     protein G1; F3L17.110; F3L17_110"
                     /note="Exo70 exocyst complex subunit; Region: Exo70;
                     pfam03081"
                     /db_xref="CDD:427126"
ORIGIN      
ctgtactctatattagcaagattttttttttataaccgaagtcgcaagtgatgctgtgaaaccttgtgcttcactgtcatgcactttgtcagtttccgtcgggcatcgcgagaaaaaaaaaaactgtcgaaaaacaaaaaagtttctctttccgatatatcattcttttgtttactgggtctctctctctctagagaaactatcacaccgttttgattcttccgctaaactctcgccgtcggataaacttttcgccggcgaccctttaaagtagaagaccttatctatactcgatttctttcgtttgagtgtcttagttaaaaagttactccctttctgggaattctctggtttcggttcttgcaattttttcggtggttgtttggtagctgtgaaaatttctgtgtctgggtttgtttgtttctgtttgtgtaattgctaactagatttctgggtttggtttgatttattgaaagttggaagggtaataaaagagacgaaaaaaaaagagagaggaaagtgtttgatgttttgcatctgattctgaatcgattaatctccaaagtcatcatttttattaggaataaagtttggaagattacttgctttccttggagtgagatttttctgggttttctagggttttattttgattgaatttaatgatggcggagtctactggggtggatcgtgggattcagagcttgatagctgctagaaagtctttaaaattgagtcttgagaaatcaaaagccattgggttagctttgggtaaaactggtcctaggtttgatgagattgagcagagattgccgttgcttgaagctgcggttaggccgatacgagctgatggagaagctctcaaggatgttggtggtaacattaaccgagctgttggtcctgcagctgctgtgcttaaggtgttcgatgctgttcatggacttgagaagtctttgttatcagatcccaagaacgatctttcgagttatttatcggtgttgaagcggttagaggaagctttgaagtttctaggggagaattgtggtttagctatccagtggttggaagatatagttgagtatcttgatgatcaccatgtcgctgatgagaagtatctttcgaatttaaagaaatctttgagagggcttagtgaatttcataatgaccgtggaggaggagaagagaaagagagatctcaattgcgtcttgatggcgggcttaggaatgctgctttagataagctggaaaacgagttcaggaggctcttgaaggataacagtgtaccacttccaatggcgtctccatcatcactcggtgatcaggcttgcattgcaccgtctcagttgcctgttactgtaattcataaactgcaagccattcttgggagactcagagctaataacagactcgacaagtgcatttcaatatacgttgaagtgaggagcttgaatgttagagctagtcttcaagcacttgacttagattatctagatatctcggtttctgagttcaacgatgtgcagagcatagaagggtatatagctcagtggggtaatcatttagagtttgcggttaagcatctgttcgaagcagagttcaagctttgcaacgatgtctttgagagacttggtttgaatgtttggatggattgcttttcaaagattgctgctcaggccggtatgctcgcgttccttcagtttgggaaaactgtgactgatagcaagaaagatccaatcaagcttctgaagctgttagatatctttacgtcgttgaacaaactgagagcagatttcaaccgcctctttggtggagcagcctgtattgagatccaaaacttcacaagggatctcatcaaaaggataatcgatggtgcagcggaaatcttctgggagcttctggttcaggtagagattcagaaacaaaccccgcctcctagcgatggtggtgttcctagattagtcagttttgtaactgattactgcaataaacttattggagataagtacaagtcaacactaactcaggttctgctcatacataagagctggagatcagaaaggttccaagataatcagcttatggttgaggttttaagaataatcaaagccattgagcagaatctggatgtatggatgaaagcgtatccggatcaaacgcttgcgcatttcttcggtatgaataatcactggcatttatacaagaacttaaagggtacaaatattggggatcatttaggagattcgtggctgaaagaacatgatcagtacaaagagtattacgccactgtcttccttagagacagttggggtaagcttccaagccacttgagccgagaagggctgatacttttctcgggtggacatgccacagctcgtgatcttgtcaagaagagattgaaagcattcaatgatgcgtttgatgagatgtataagaagcaagcatcatgggtcttaccagagaaagatttaagggatagagtttgccagcagatagttcaggctattgtgccggtttacagaagctatatgcaaaactatgggccattggttgagaaagacgcgagttcaagcaagtatgtgagatacactgtggtagctttggagaagatactcagttctctttacatgcctaagcccatgagatatggaagcttcaaaggaacaccgccaagtgagaaattcaagaatgatgttgaccttaggcgtactacttctgcagttgtctgattgaagccatgttctgttctcgaatgttgtattaaaatgtgtccacattggtatgatctccatctcctggaagcagaggtattgttacacgtatataaatactgtcaatcaggtatagcttttagtcattggtcaagtccctttagctcattagtttcataagacttcatgttagggaccaagcgggtttagattattctatttaatgtattaatctgaagaacaggattataaaatgtgggattcctataatatcgaaagaaaaattgtccctataaatcttcttgttcttagtgttgtgctacatttgtaacttttattaattttaagacaataaaggaaaattcagcaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]