LOCUS       NM_115172                900 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Modifier of rudimentary (Mod(r)) protein
            (VPS37-1), mRNA.
ACCESSION   NM_115172
VERSION     NM_115172.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 900)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 900)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 900)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Apr 18, 2007 this sequence version replaced NM_115172.3.
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..900
                     /gene="VPS37-1"
                     /locus_tag="AT3G53120"
                     /db_xref="Araport:AT3G53120"
                     /db_xref="GeneID:824478"
                     /db_xref="TAIR:AT3G53120"
     CDS             89..742
                     /gene="VPS37-1"
                     /locus_tag="AT3G53120"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV815969.1,INSD:AV797199.1,INSD:BP654223.1,
                     INSD:BP639679.1,INSD:BP607233.1,INSD:ES048362.1,
                     INSD:BP657254.1,INSD:EG503209.1,INSD:AV784747.1,
                     INSD:BP637991.1,INSD:BP616194.1,INSD:BP651783.1,
                     INSD:EL172100.1,INSD:T42676.1,INSD:BP636108.1,
                     INSD:BP639284.1,INSD:N96639.1,INSD:ES125301.1,
                     INSD:EH858842.1,INSD:EH849960.1,INSD:DR370117.1,
                     INSD:DR322175.1,INSD:ES153940.1,INSD:EL102070.1,
                     INSD:DR186191.1,INSD:EL202174.1,INSD:AV806749.1,
                     INSD:BP650272.1,INSD:AV790240.1,INSD:BP644798.1,
                     INSD:AV817907.1,INSD:EH822958.1,INSD:BP661267.1,
                     INSD:EL261936.1,INSD:ES102867.1,INSD:BP642175.1,
                     INSD:EL226300.1,INSD:AU227123.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:BX822324.1"
                     /note="VPS37-1; CONTAINS InterPro DOMAIN/s: Modifier of
                     rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis
                     thaliana protein match is: Modifier of rudimentary
                     (Mod(r)) protein (TAIR:AT2G36680.1); Has 448 Blast hits to
                     448 proteins in 101 species: Archae - 0; Bacteria - 6;
                     Metazoa - 285; Fungi - 19; Plants - 79; Viruses - 0; Other
                     Eukaryotes - 59 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Modifier of rudimentary (Mod(r)) protein"
                     /protein_id="NP_190880.1"
                     /db_xref="GeneID:824478"
                     /db_xref="TAIR:AT3G53120"
                     /db_xref="Araport:AT3G53120"
                     /translation="

MFNFWGSKDQQQGQSRPQEASSQSPWYSPSLVSSPSSSRPQSSGQISAQVSPGEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQEAMNQVDEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRRALIHLAAKTSNI"

     misc_feature    275..715
                     /gene="VPS37-1"
                     /locus_tag="AT3G53120"
                     /note="Modifier of rudimentary (Mod(r)) protein; Region:
                     Mod_r; pfam07200"
                     /db_xref="CDD:429347"
ORIGIN      

ttaaattttgtcgatctggtaggaagaagaagtacaagagaacaagaaaaagtcaattcctttcgttagtcggcgaattctagaaacgatgttcaatttctggggatcaaaagaccaacaacaagggcaatctcgtcctcaggaagcttcttcacagtcgccatggtactcgccttctttagttagctcgccaagctcatcccggcctcaaagttcaggtcagatttcagcacaagtatcaccgggtgaagcagctggcattatcgtcttcttgaaagacaaaagcgtggatgaactcaggaagcttctctctgacaaagatgcgtatcagcaatttctgctctctcttgaccaggtcaaagtccagaataatatcaaagatgagctccgtagagaaacattgcagctagctagagacaacttggagaaggagccacagataatggagctcagaaaccaatgcagaattatccgtacaactgagctcgcaactgcgcaagaaaagcttaatgagcttgagaggcaaaaagaagagatcctcaaattctactcccctggttctcttcttcataaacttcaagaggctatgaatcaggtggatgaagaatccgaagccctgcaagaaaagttcctagagaaggagattgatacagcagcatttgtgcagaaatacaagaagcttcgtactacctatcatcgacgagcattgatccatcttgccgctaaaacgtcaaacatttgagattaaaaagctttacacattgaattcgagactttggttgtgtattatgactcttacccattgttgtaaaaaaaatgctttgctgtttactgtttaggttcatactaaagtgattgacattgacataaaaaatgttttccttttcccttaacaaaaaa

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