2024-03-28 19:27:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_115076 1530 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana 3-ketoacyl-CoA synthase 15 (KCS15), mRNA. ACCESSION NM_115076 VERSION NM_115076.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1530) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 1530) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1530) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1530) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_115076.3. FEATURES Location/Qualifiers source 1..1530 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" gene 1..1530 /gene="KCS15" /locus_tag="AT3G52160" /gene_synonym="3-ketoacyl-CoA synthase 15" /note="Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids)." /db_xref="Araport:AT3G52160" /db_xref="GeneID:824381" /db_xref="TAIR:AT3G52160" CDS 78..1433 /gene="KCS15" /locus_tag="AT3G52160" /gene_synonym="3-ketoacyl-CoA synthase 15" /inference="Similar to RNA sequence, EST:INSD:DR379880.1,INSD:DR280260.1,INSD:EH881610.1, INSD:DR280262.1,INSD:DR280259.1,INSD:EL283292.1, INSD:DR280261.1,INSD:DR280263.1,INSD:DR280264.1, INSD:AV530749.1,INSD:DR280258.1,INSD:DR280256.1, INSD:DR280257.1" /inference="Similar to RNA sequence, mRNA:INSD:DQ446759.1,INSD:AY084713.1,INSD:DQ653147.1" /note="3-ketoacyl-CoA synthase 15 (KCS15); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: lipid biosynthetic process, fatty acid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 10 (TAIR:AT2G26250.1); Has 4252 Blast hits to 4241 proteins in 1006 species: Archae - 0; Bacteria - 1239; Metazoa - 0; Fungi - 2; Plants - 2897; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink)." /codon_start=1 /product="3-ketoacyl-CoA synthase 15" /protein_id="NP_190784.1" /db_xref="GeneID:824381" /db_xref="TAIR:AT3G52160" /db_xref="Araport:AT3G52160" /translation="
MEKEATKMVNGGVKSKSPKGSPDFLGYNLRYVKLGYIYLLSLSRTFCFFLPPLLLLFIFVSRFLPILAFPLSTFFILLIYHYLTPSSVFLLDFSCYRPPDHLKITKSDFIELAMKSGNFNETAIELQRKVLDQSGIGEESYMPRVVFKPGHRVNLRDGREEAAMVIFGAIDELLAATKINVKHIKILVLNCGVLNTTPSLSAMVINHYKLRHNTESYNLGGMGCSAGVIAIDLAKDLLNAHQGSYALVVSTEIVSFTWYSGNDVALLPPNCFFRMGAAAVMLSSRRIDRWRAKYQLMQLVRTHKGMEDTSYKSIELREDRDGKQGLYVSRDVMEVGRHALKANIATLGRLEPSFEHICVLASSKKVLDDIHKDLKLTEENMEASRRTLERFGNTSSSSIWYELAYLEHKAKMKRGDRVWQIGFGSGFKCNSVVWKALKNIDPPRHNNPWNL"
misc_feature 114..1424 /gene="KCS15" /locus_tag="AT3G52160" /gene_synonym="3-ketoacyl-CoA synthase 15" /note="3-ketoacyl-CoA synthase; Region: PLN02192" /db_xref="CDD:215123" ORIGIN
gccatctttctgttacactgactcatatttatttgattatttattgagagaccacaaggttttgatgcttagtgaaaatggaaaaagaggcaacaaagatggtgaatggtggagttaagtcaaagtcacctaagggcagtcctgatttcctcggatataatttgagatatgtcaagcttggatacatttaccttctctctctctcacgtaccttttgtttcttccttcctcctcttcttcttctcttcatctttgtttctcgatttctcccaatcttggctttccctttgtctaccttcttcatcctcctcatctatcattatcttactccttcctctgtttttcttctcgatttctcctgttaccgcccacccgatcatctcaagatcacaaaaagcgacttcatcgagctggcaatgaagtctggtaacttcaacgagactgccatcgagcttcaaagaaaagtgctggaccaatcagggataggagaggagagctacatgccgagagtggtcttcaagcctggtcacagggtcaatcttcgtgatggtcgtgaagaagcagcaatggtgatctttggagcaattgatgaacttcttgcagcgaccaaaatcaatgtgaagcatatcaagatcctggtgctaaactgcggagtcctcaacaccacgccatctctatcggccatggtgattaaccattataagctgaggcataacacagagagctacaatcttggtggtatggggtgtagcgccggagtcatagccattgatttagccaaagatcttttaaacgctcatcaaggctcttacgctttggtggtgagcactgagatagtaagcttcacttggtactcaggtaatgacgtcgcgttgcttccaccaaattgcttctttcgaatgggagcagctgcagttatgctatctagtcggcgtatcgacagatggcgagccaaataccaacttatgcagctagtaagaacccataaaggcatggaagacacaagttacaagagcatagagttaagagaagacagagatgggaaacaaggactatatgtatctagagatgtaatggaagttgggcgccatgcactgaaagcaaacattgcaacgcttggtcgtcttgagccttcctttgaacatatatgcgtattagcatcgagtaagaaagtacttgatgacattcataaggatctcaagttgacagaagagaatatggaggcatcaagacggacattggagcgtttcgggaacacatcaagcagcagtatatggtacgagctggcttacctagaacacaaggcgaagatgaaaagaggagatagggtttggcaaatcggtttcgggtcagggtttaaatgcaatagtgttgtatggaaagccctaaaaaacattgaccctccaagacataacaacccatggaatctctgaggattcatcaaagttaacaattgtatgataacatgaataaaataacccaccaatgcaaaatccacaatttattcaaatagtgtgattgcatttgaac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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