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2024-04-29 08:17:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_113423               1884 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana cytochrome P450, family 82, subfamily G,
            polypeptide 1 (CYP82G1), mRNA.
ACCESSION   NM_113423
VERSION     NM_113423.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1884)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1884)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1884)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1884)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_113423.3.
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1884
                     /gene="CYP82G1"
                     /locus_tag="AT3G25180"
                     /gene_synonym="cytochrome P450; family 82; polypeptide 1;
                     subfamily G"
                     /note="Encodes a cytochrome P450 monooxygenase (CYP82G1)
                     that catalyzes the production of two volatile
                     homoterpenes, TMTT and DMNT, although it is only likely to
                     produce TMTT in planta. TMTT can be involved in attracting
                     predatory insects to protect Arabidopsis plants from
                     herbivorous pests. Homoterpene synthesis is also
                     stimulated by fungal elicitors which increase the
                     transcript levels of CYP82G1."
                     /db_xref="Araport:AT3G25180"
                     /db_xref="GeneID:822110"
                     /db_xref="TAIR:AT3G25180"
     CDS             32..1579
                     /gene="CYP82G1"
                     /locus_tag="AT3G25180"
                     /gene_synonym="cytochrome P450; family 82; polypeptide 1;
                     subfamily G"
                     /inference="Similar to RNA sequence, EST:INSD:CB185938.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:BX822752.1"
                     /note="''cytochrome P450, family 82, subfamily G,
                     polypeptide 1'' (CYP82G1); FUNCTIONS IN: electron carrier
                     activity, monooxygenase activity, iron ion binding, oxygen
                     binding, heme binding; INVOLVED IN: oxidation reduction;
                     LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant
                     structures; EXPRESSED DURING: 8 growth stages; CONTAINS
                     InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128),
                     Cytochrome P450, conserved site (InterPro:IPR017972),
                     Cytochrome P450, E-class, group I (InterPro:IPR002401);
                     BEST Arabidopsis thaliana protein match is: cytochrome
                     P450, family 82, subfamily C, polypeptide 4
                     (TAIR:AT4G31940.1); Has 33970 Blast hits to 33806 proteins
                     in 1725 species: Archae - 58; Bacteria - 3885; Metazoa -
                     11872; Fungi - 7373; Plants - 9512; Viruses - 6; Other
                     Eukaryotes - 1264 (source: NCBI BLink)."
                     /codon_start=1
                     /product="cytochrome P450, family 82, subfamily G,
                     polypeptide 1"
                     /protein_id="NP_189154.1"
                     /db_xref="GeneID:822110"
                     /db_xref="TAIR:AT3G25180"
                     /db_xref="Araport:AT3G25180"
                     /translation="
MTFLFSTLQLSLFSLALVIFGYIFLRKQLSRCEVDSSTIPEPLGALPLFGHLHLLRGKKLLCKKLAAMSQKHGPIFSLKLGFYRLVVASDPKTVKDCFTTNDLATATRPNIAFGRYVGYNNASLTLAPYGDYWRELRKIVTVHLFSNHSIEMLGHIRSSEVNTLIKHLYKGNGGTSIVKIDMLFEFLTFNIILRKMVGKRIGFGEVNSDEWRYKEALKHCEYLAVIPMIGDVIPWLGWLDFAKNSQMKRLFKELDSVNTKWLHEHLKKRSRNEKDQERTIMDLLLDILPEDIVISGHVRDVIVKATILALTLTGSDSTSITLTWAVSLLLNNPAALEAAQEEIDNSVGKGRWIEESDIQNLKYLQAIVKETHRLYPPAPLTGIREAREDCFVGGYRVEKGTRLLVNIWKLHRDPKIWPDPKTFKPERFMEDKSQCEKSNFEYIPFGSGRRSCPGVNLGLRVVHFVLARLLQGFELHKVSDEPLDMAEGPGLALPKINPVEVVVMPRLDPKLYSLL"
     misc_feature    248..1549
                     /gene="CYP82G1"
                     /locus_tag="AT3G25180"
                     /gene_synonym="cytochrome P450; family 82; polypeptide 1;
                     subfamily G"
                     /note="cytochrome P450 family 82; Region: CYP82; cd20654"
                     /db_xref="CDD:410747"
     misc_feature    order(353..355,428..430,440..442,464..466,605..607,
                     959..961,968..973,980..985,1160..1162,1172..1177,
                     1181..1183,1361..1372,1379..1393,1400..1405)
                     /gene="CYP82G1"
                     /locus_tag="AT3G25180"
                     /gene_synonym="cytochrome P450; family 82; polypeptide 1;
                     subfamily G"
                     /note="heme binding site [chemical binding]; other site"
                     /db_xref="CDD:410747"
     misc_feature    order(689..691,701..703,770..772,956..958,965..970,
                     1175..1177)
                     /gene="CYP82G1"
                     /locus_tag="AT3G25180"
                     /gene_synonym="cytochrome P450; family 82; polypeptide 1;
                     subfamily G"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:410747"
ORIGIN      
attatcccatacattaaacaaagtgatcaccatgacttttctctttagtactctccagttgtctctcttctctttggcccttgtaatctttggttacattttcctcagaaaacaattgagtagatgtgaagttgatagctccacgattcctgagccattgggagctttgcctctattcggacacctccatcttttgcgtggcaaaaaactcctttgcaagaaattagctgccatgtcccaaaaacatggtcctatcttctccctcaagttagggttttataggctggttgtagccagcgacccaaaaacggtgaaagattgtttcaccaccaacgacttggctacagcaaccagacccaatatagcctttggtcggtacgtaggctacaacaatgcaagtctgactctggctccctatggagactattggcgtgagttacgtaagattgtcaccgtccatctattctcaaaccacagtatagagatgcttggtcacattcgttcttcagaagtaaacacgttgatcaaacacctatacaaagggaatggtggaacttctatagtgaagattgacatgttatttgagtttttgaccttcaatataatccttaggaagatggtggggaagaggattggtttcggtgaagtgaatagcgatgaatggcgttataaggaggccctgaagcattgcgagtacttggctgtgattcctatgataggcgacgttattccatggttgggatggttggattttgcaaaaaattctcaaatgaagagactatttaaggagcttgactcagtcaacaccaagtggctccacgaacatctcaagaagagatcaagaaatgagaaggatcaagaaagaacaatcatggatctactgctagacatcttaccagaggatattgtgataagtggacacgtacgcgatgtcattgtgaaggcaacaattttggctctcacattaacaggatcagacagcacatccatcactttgacatgggcggtatcgctgctactcaacaatccagctgctttagaagcagcacaagaagagattgataatagtgtcggcaaaggtagatggattgaagaatccgatatacaaaacctcaagtacctacaagctattgttaaggaaacgcaccgactttacccgccggctcctctaacaggaatccgcgaagcacgtgaagattgtttcgtgggaggataccgtgttgagaaaggcacacgcttgctcgtaaacatatggaaacttcatagggatcccaagatctggcctgaccccaaaacctttaagcctgagaggttcatggaggataaatcacaatgtgaaaagagcaactttgaatacattcctttcggttcgggaaggaggtcgtgtccgggagtcaatcttggtctaagagttgtacactttgtattggctagattgcttcaagggtttgagttacacaaagtgtctgatgaaccactggatatggctgaagggcctggtttagccttgccaaagattaacccggtcgaagtagttgtaatgcctcggctcgacccgaagttgtatagtttactctaaaccattgtgtactcgataattattgggagcttcttgtgatcatgcctttctgattttagacatgtatggtgtcaatggtttaaaaaaacaatttgggaaaggagagacaaccatattggaacaactttttatattgaataatattgtattaaatgctgtataaatcatatacatgcacatattgaaagaaaagttagtataaaatttagatgaaagcatatataatggttcatttatttgtttagtgaaaaaaagaaagatctttgggagaaaaggaatcacattgtaagatttttgtaacttag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]