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2024-05-01 23:20:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_102029               2679 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana filament-like protein (DUF869) (AT1G21810),
            mRNA.
ACCESSION   NM_102029
VERSION     NM_102029.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 2679)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2679)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2679)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 2679)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_102029.2.
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..2679
                     /locus_tag="AT1G21810"
                     /gene_synonym="T26F17.2"
                     /db_xref="Araport:AT1G21810"
                     /db_xref="GeneID:838784"
                     /db_xref="TAIR:AT1G21810"
     CDS             531..2420
                     /locus_tag="AT1G21810"
                     /gene_synonym="T26F17.2"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES026607.1,INSD:ES059835.1,INSD:ES066692.1,
                     INSD:EL995386.1,INSD:DR354895.1,INSD:AU226988.1,
                     INSD:ES008157.1,INSD:EH949741.1,INSD:AU236163.1,
                     INSD:EH847597.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AK228278.1,INSD:BT003117.1"
                     /note="Plant protein of unknown function (DUF869);
                     CONTAINS InterPro DOMAIN/s: Protein of unknown function
                     DUF869, plant (InterPro:IPR008587); BEST Arabidopsis
                     thaliana protein match is: Plant protein of unknown
                     function (DUF869) (TAIR:AT1G77580.1); Has 79141 Blast hits
                     to 43153 proteins in 2526 species: Archae - 1269; Bacteria
                     - 11097; Metazoa - 38829; Fungi - 6739; Plants - 4917;
                     Viruses - 325; Other Eukaryotes - 15965 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="filament-like protein (DUF869)"
                     /protein_id="NP_173599.2"
                     /db_xref="Araport:AT1G21810"
                     /db_xref="GeneID:838784"
                     /db_xref="TAIR:AT1G21810"
                     /translation="
MMTGTTLILEPVMDSKDELVKQHAKVAEDAVAGWEKAENEVVELKQKLEDAADKNIVLEDRVSHLDGALKECVRQLRQFRDEQEKNIQAAVTESTKELHSANTGLEKRVLELQKEAEAAKSENMMLRREFLTQREDLEIVMIERDLSTQAAETASKQHLDIIKKLAKLEAECRKLRILAKTSSSLSSNQSVDSHSDGGRERVEGSCSDSWASSAFISELDQIKNEKGGNRSLQGTTSSTEIDLMDDFLEMERLVALPTETQAKNSKDGYELSLMEKLEKIQAEKDDLEREVKCCREAEKRLSLEIEAVVGDKMELEDMLKRVEAEKAELKTSFDVLKDKYQESRVCFQEVDTKLEKLQAEKDELDSEVICCKEAEKRFSLELEAVVGDKIEMEDELEKMEAEKAELKISFDVIKDQYQESRVCFQEVEMKLEAMKRELKLANESKTQAESRVTRMEAEVRKERIVSDGLKEKCETFEEELRREIEEKTMIKREKVEPKIKQEDIATAAGKFADCQKTIASLGKQLQSLATLEEFLIDTASIPGSARSVHNKEALLGKDPHECIKTINGRSLEFLAIQNSNNKTSPPCSSSSDSTTVSLIMSSNRGSSEKNRNGFATVFTRSRNSVNLGI"
     misc_feature    576..>1325
                     /locus_tag="AT1G21810"
                     /gene_synonym="T26F17.2"
                     /note="Filament-like plant protein, long coiled-coil;
                     Region: FPP; pfam05911"
                     /db_xref="CDD:428669"
     misc_feature    <1347..2114
                     /locus_tag="AT1G21810"
                     /gene_synonym="T26F17.2"
                     /note="Chromosome segregation ATPase [Cell cycle control,
                     cell division, chromosome partitioning]; Region: Smc;
                     COG1196"
                     /db_xref="CDD:224117"
ORIGIN      
atgctgaagaaaaagttagatatcttctccctctcttcctcttttgaaaattgaaaaaaaaagacatttcaaaactgtaaagaattacaaccacaaaaagaaagaaattctcgcttttttggccatgttatttattcttggttttgaagaatcatatcatattgcaactgttttctagtctggtaatcttgttttctcctcaactcttttttctaatgttctgtaacaaattgttcattacacgaaacgaaacagaaagatgttgttgtagttcttttttaatgacatgttatgaagtgattgctaaaatcattaccagttttgtgttcttctgggaaatgttgtggtccagtccattatatagttaagtacttaagatttgttgtcagagtgtcctgaaagcaaaatctgggaaagctgataagccaagttacctctttttttttatacatatgttttcaaaagttcctaaaaaattgtttggttttgttttatttttctcttcttaaggtacttaagtttgtgatttgatgatgactggtactactttgatattggaaccagttatggattccaaagatgagctagtgaaacaacatgccaaagttgcagaagatgctgttgctgggtgggagaaagctgagaatgaagtggttgagctgaagcaaaagctcgaggatgcggctgataagaacattgtcttggaagatagggtaagtcatcttgatggggcgcttaaggagtgtgtgagacaactaaggcagtttagagatgaacaagagaagaatattcaagcagctgtgactgagagcaccaaggagttgcattctgctaacactggtctagagaagcgagttcttgagctccagaaagaagcagaagctgctaaatctgaaaacatgatgctgagacgcgagtttcttacacagcgtgaagaccttgagattgtgatgattgagagggacttgagcactcaagcagcagaaactgctagtaagcagcatttagacatcataaagaagttggcgaaactcgaagctgagtgcaggaagcttaggattttggctaaaacatcatcatcgctatcatctaatcaatctgtggatagtcattcagatggaggaagggagagagttgaggggagttgctctgattcatgggcatcatcagcatttatttctgagttagatcaaatcaagaatgaaaaaggcggcaatagaagtcttcagggcactacttcatcaactgaaattgatctcatggatgatttccttgagatggaacgtcttgtggctcttcctactgagacacaggctaaaaactccaaggatggatatgaattgagcttaatggagaagttggagaagatacaagcagaaaaggatgatcttgaaagagaagttaaatgttgtagagaagcggaaaagagattgagcttagagattgaagcagttgttggtgacaaaatggagttggaagatatgttaaagagggtggaagctgagaaagctgagctaaagacatcttttgacgtgctcaaagataaatatcaagagtcaagagtttgttttcaagaagttgacacaaagttggagaagctacaagcagaaaaggatgagcttgacagtgaagttatttgttgtaaagaagcagagaagagattcagcttagaactcgaagctgtagttggtgacaaaattgagatggaagatgagttggagaagatggaagctgagaaagctgagctaaagatatcttttgacgtaattaaagatcaatatcaagaatctagagtttgttttcaagaagttgagatgaagttggaagcgatgaaaagggagcttaaactagctaatgaatcgaaaacacaagccgaatctcgggtgaccagaatggaagcagaggtgagaaaggagaggattgtctctgatgggctaaaggaaaagtgtgagacatttgaagaagagcttagaagagagatagaagagaagacaatgatcaagagagaaaaagtggaaccaaagatcaaacaggaagacatagcaacagctgcaggaaaatttgcagattgtcagaaaacaatagcatcacttgggaaacagctacaatctcttgcaacactagaagaattcttgatcgatacagctagcattccaggttctgcaaggtcagttcacaacaaggaagctttgttaggaaaagatcctcatgagtgcatcaaaacaatcaatggaagatcacttgagtttcttgcaatccagaacagcaataacaagacctcacctccttgttcatcttcttcggactcaacaacagtgtcattaattatgtcatcaaaccgagggagttctgagaagaatcgcaacggatttgccacggttttcactcgaagtagaaactcagtaaatttggggatttaggagaagcaataggttcgttcttggagtatagctagaatcaatctgttgttaagctggatttcttaccataattttcagattctgacttgttagtagcaaaaagatcacccttgtttcttttgctacatagtgtaatcttcttaacgtttatgtcttgtgagattcatctttgttatttcactgtcaccagtttgatggtctcatatgatgcattgtcaccaagtaaaatattgatttttgttttgtttggttagataaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]