LOCUS       NM_101594               1140 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Metal-dependent phosphohydrolase (AT1G17330),
            mRNA.
ACCESSION   NM_101594
VERSION     NM_101594.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1140)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1140)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1140)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1140)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_101594.2.
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1140
                     /locus_tag="AT1G17330"
                     /db_xref="Araport:AT1G17330"
                     /db_xref="GeneID:838304"
                     /db_xref="TAIR:AT1G17330"
     CDS             141..809
                     /locus_tag="AT1G17330"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH898190.1,INSD:BP668536.1,INSD:BP626663.1,
                     INSD:AV819777.1,INSD:ES097605.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT009671.1,INSD:BT002376.1"
                     /note="Metal-dependent phosphohydrolase; FUNCTIONS IN:
                     catalytic activity; INVOLVED IN: biological_process
                     unknown; LOCATED IN: cellular_component unknown; EXPRESSED
                     IN: 21 plant structures; EXPRESSED DURING: 13 growth
                     stages; CONTAINS InterPro DOMAIN/s: Metal-dependent
                     phosphohydrolase, HD subdomain (InterPro:IPR006674),
                     Metal-dependent phosphohydrolase, HD domain
                     (InterPro:IPR003607); Has 1677 Blast hits to 1677 proteins
                     in 841 species: Archae - 70; Bacteria - 1404; Metazoa - 0;
                     Fungi - 90; Plants - 42; Viruses - 5; Other Eukaryotes -
                     66 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Metal-dependent phosphohydrolase"
                     /protein_id="NP_173176.1"
                     /db_xref="Araport:AT1G17330"
                     /db_xref="GeneID:838304"
                     /db_xref="TAIR:AT1G17330"
                     /translation="

MAAKTMRKAEELVEKAMKGNDASHDAWHVWRVRDLALSIAREEGLSSNSDSMEIVELAALLHDIGDYKYIRDPSEEKLVENFLDDEGIEETKKTKILTIINGMGFKDELAGVALCESLPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPEIKPRTELTKEQYIKREEQTTINHFHEKLLKLKKLMKTEAGKRRAEKRHKFMEEYLKEFYEEWDGST"

     misc_feature    162..800
                     /locus_tag="AT1G17330"
                     /note="HD superfamily phosphodieaserase, includes HD
                     domain of RNase Y [Translation, ribosomal structure and
                     biogenesis, General function prediction only]; Region:
                     RnaY; COG1418"
                     /db_xref="CDD:224336"
ORIGIN      

ctctttgactccggtggtcaacgtcgagccgagacggcaaacttgaatcaattttaaaacagagcttccgacgctgaaattgcaaaatcaaaatctctccaatcttcgaaactgagcagttgagagagagagagagatagatggcggcgaagacgatgaggaaggcggaggagctggtggagaaggcgatgaaaggaaacgatgcttctcatgacgcctggcacgtgtggagggtccgagaccttgctctctccattgctcgcgaggaaggtctctcttccaattctgactccatggaaattgtggagcttgcagctcttctccatgatataggtgattacaagtacataagagacccttcggaagagaaacttgttgagaatttcctagatgatgagggtatagaagagaccaagaagacgaagatactaacgatcatcaatggaatgggttttaaagacgaattagcaggagtagcactctgtgagtctcttccagaatttggggtagttcaagatgctgatcgccttgatgcaattggcgccataggaattgctcgttgctttacatttggtggaagcaggaacagagtgcttcatgatcctgagatcaagccccggacagagctaaccaaagagcagtacattaagagagaggagcaaactactattaatcactttcatgagaaactcctcaagctaaagaagctgatgaaaactgaggcgggtaaaaggagggcagagaaaaggcacaagttcatggaagagtatcttaaggagttctatgaagagtgggatgggtcaacttgaaaagttaaaaatgataaatgaagcagaaaagcagaggatttgttcaaccggattttattgagtaagcagtacctaccaaaccaatatgtggtttaggttttaaacagagtggcaactctctctctctttttattttttgtttaaggcaactctatttaaatagctcgtaataactatacatttataaatgttaaaattgctttgtttttaaaaaaagaaaactctattattttgtcaatgccaatgattgtggaagaaatcaagcaaggattacacgatagagccaatcgttttcttttcataatttttttttttacgccaaagtcagttg

//