LOCUS       NM_100588               1516 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Pleckstrin homology (PH) domain superfamily
            protein (SIRANBP), mRNA.
ACCESSION   NM_100588
VERSION     NM_100588.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1516)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1516)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1516)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1516)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_100588.3.
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1516
                     /gene="SIRANBP"
                     /locus_tag="AT1G07140"
                     /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN
                     SIRANBP"
                     /note="Encodes a putative Ran-binding protein (siRanBP)."
                     /db_xref="Araport:AT1G07140"
                     /db_xref="GeneID:837225"
                     /db_xref="TAIR:AT1G07140"
     CDS             149..835
                     /gene="SIRANBP"
                     /locus_tag="AT1G07140"
                     /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN
                     SIRANBP"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL979696.1,INSD:EL023249.1,INSD:EG443702.1,
                     INSD:CF652729.1,INSD:BP801468.1,INSD:BP631288.1,
                     INSD:EL292612.1,INSD:BP565831.1,INSD:EH858180.1,
                     INSD:DR257215.1,INSD:BP630349.1,INSD:EL129082.1,
                     INSD:DR257192.1,INSD:H76544.1,INSD:EL124381.1,
                     INSD:DR257212.1,INSD:EL284894.1,INSD:ES003970.1,
                     INSD:BP602429.1,INSD:BP835369.2,INSD:ES010620.1,
                     INSD:EL272278.1,INSD:DR257206.1,INSD:BP564757.1,
                     INSD:EL167400.1,INSD:AV796561.1,INSD:AV824109.1,
                     INSD:DR257217.1,INSD:DR257218.1,INSD:EG510807.1,
                     INSD:ES074347.1,INSD:EH991029.1,INSD:ES207858.1,
                     INSD:DR257196.1,INSD:BP577643.1,INSD:BP860570.1,
                     INSD:BP799948.2,INSD:EL206280.1,INSD:DR257214.1,
                     INSD:DR257220.1,INSD:EH922033.1,INSD:BP632476.1,
                     INSD:BP619896.1,INSD:EL066481.1,INSD:EG510809.1,
                     INSD:EL337150.1,INSD:EL001671.1,INSD:T88156.1,
                     INSD:AV541936.1,INSD:BP592517.1,INSD:EL130643.1,
                     INSD:ES017535.1,INSD:BP841057.1,INSD:DR257211.1,
                     INSD:CB264740.1,INSD:AV832231.1,INSD:AV543434.1,
                     INSD:EL256330.1,INSD:DR257198.1,INSD:BP613315.1,
                     INSD:DR257208.1,INSD:AV541395.1,INSD:H76880.1,
                     INSD:BP644614.1,INSD:ES052345.1,INSD:AV799724.1,
                     INSD:AV808515.1,INSD:DR257191.1,INSD:DR257213.1,
                     INSD:EL135098.1,INSD:BP580964.1,INSD:BP862266.1,
                     INSD:EH891155.1,INSD:BP641950.1,INSD:ES103598.1,
                     INSD:AV785258.1,INSD:BP600627.1,INSD:BP648725.1,
                     INSD:AV792871.1,INSD:ES131767.1,INSD:BP652813.1,
                     INSD:DR257188.1,INSD:BP806227.1,INSD:EL981398.1,
                     INSD:BP570673.1,INSD:BP577269.1,INSD:BP597364.1,
                     INSD:EH825111.1,INSD:ES044366.1,INSD:DR257216.1,
                     INSD:BP616866.1,INSD:ES004215.1,INSD:BP857461.1,
                     INSD:EH807605.1,INSD:BP576027.1,INSD:EH978216.1,
                     INSD:BP566396.1,INSD:ES070940.1,INSD:ES059085.1,
                     INSD:AV441094.2,INSD:EL112503.1,INSD:BP802049.1,
                     INSD:AV788096.1,INSD:ES066084.1,INSD:EL056880.1,
                     INSD:EH891341.1,INSD:DR257202.1,INSD:EL122424.1,
                     INSD:BP826500.1,INSD:DR257193.1,INSD:BP575068.1,
                     INSD:DR257194.1,INSD:BP804576.1,INSD:DR257219.1,
                     INSD:BP801531.1,INSD:AA389814.1,INSD:EL019522.1,
                     INSD:BP620536.1,INSD:DR257207.1,INSD:BP591854.1,
                     INSD:ES147459.1,INSD:EL014021.1,INSD:AI996939.1,
                     INSD:BP627560.1,INSD:BP657402.1,INSD:AA712288.1,
                     INSD:BP648613.1,INSD:DR257209.1,INSD:AV442638.1,
                     INSD:ES095380.1,INSD:CB264552.1,INSD:DR257221.1,
                     INSD:EH808561.1,INSD:DR257203.1,INSD:ES028261.1,
                     INSD:AV815574.1,INSD:BP668661.1,INSD:DR257190.1,
                     INSD:BP801014.1,INSD:BP819715.1,INSD:BP570440.1,
                     INSD:DR257199.1,INSD:ES056081.1,INSD:EH850630.1,
                     INSD:DR257189.1,INSD:BP664109.1,INSD:BP583898.1,
                     INSD:EH876790.1,INSD:BP854724.1,INSD:DR257210.1,
                     INSD:EL282518.1,INSD:EL031239.1,INSD:DR257197.1,
                     INSD:DR257195.1,INSD:DR257200.1,INSD:BP578089.1,
                     INSD:ES111213.1,INSD:AV440349.1,INSD:BP651545.1,
                     INSD:EL160873.1,INSD:AV786435.1,INSD:BP803873.1,
                     INSD:BP575634.1,INSD:DR257204.1,INSD:BP856954.1,
                     INSD:BP820732.1,INSD:BP825881.1,INSD:EL138410.1,
                     INSD:DR257205.1,INSD:ES214641.1,INSD:EL112126.1,
                     INSD:DR257201.1,INSD:BP850828.1,INSD:BE662763.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT002193.1,INSD:AF057024.1,INSD:AY097364.1,
                     INSD:AF370491.1,INSD:BX813578.1,INSD:AF410294.1,
                     INSD:X97377.1"
                     /note="SIRANBP; FUNCTIONS IN: Ran GTPase binding; INVOLVED
                     IN: intracellular transport, protein import into nucleus,
                     translocation; LOCATED IN: cellular_component unknown;
                     EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16
                     growth stages; CONTAINS InterPro DOMAIN/s: Ran binding
                     protein 1 (InterPro:IPR000156), Pleckstrin homology-type
                     (InterPro:IPR011993); BEST Arabidopsis thaliana protein
                     match is: Pleckstrin homology (PH) domain superfamily
                     protein (TAIR:AT2G30060.1); Has 2132 Blast hits to 1580
                     proteins in 275 species: Archae - 9; Bacteria - 76;
                     Metazoa - 1014; Fungi - 369; Plants - 163; Viruses - 39;
                     Other Eukaryotes - 462 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Pleckstrin homology (PH) domain superfamily
                     protein"
                     /protein_id="NP_172194.1"
                     /db_xref="Araport:AT1G07140"
                     /db_xref="GeneID:837225"
                     /db_xref="TAIR:AT1G07140"
                     /translation="

MATNEPEHEHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKTEEKTEAKAVETAKTEVKAEEKKESEAEKSGEAKKTEESGPST"

     misc_feature    221..613
                     /gene="SIRANBP"
                     /locus_tag="AT1G07140"
                     /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN
                     SIRANBP"
                     /note="Ran-binding domain; Region: RanBD_RanBP1; cd13179"
                     /db_xref="CDD:270000"
     misc_feature    order(254..259,263..274,311..313,317..319,323..325,
                     344..355,404..406,410..412,416..421,425..439,446..454,
                     476..487,506..508,512..514,524..526,533..535,539..541,
                     551..553,563..565)
                     /gene="SIRANBP"
                     /locus_tag="AT1G07140"
                     /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN
                     SIRANBP"
                     /note="Ran#RanBP1#RanGAP complex [polypeptide binding];
                     other site"
                     /db_xref="CDD:270000"
     misc_feature    order(254..259,266..274,299..301,317..319,323..325,
                     338..355,365..367,398..400,404..406,410..412,416..439,
                     446..454,476..487,494..502,506..508,512..514,524..526,
                     545..547,551..553,557..559,563..565)
                     /gene="SIRANBP"
                     /locus_tag="AT1G07140"
                     /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN
                     SIRANBP"
                     /note="CRM1-RanBP1-RanGTP complex [polypeptide binding];
                     other site"
                     /db_xref="CDD:270000"
ORIGIN      

atagttagcttcaattcaacgccgtataactatgagtcgttccgatttcctgtgttgcgaaacccccaaattctcttctctctatctctctcgcgtacgccgcaccgtagcgaccaattgaatccacgaggaaatctcagtaaatactatggcgaccaacgaacccgagcacgagcacagagacgaggaagaggccggagctaacgaggatgaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactaccggcgaggaagacgaagatgccgtccttgatctgaaatcgaagctttatcgattcgataaggatgcgaatcagtggaaggagagaggagctggtactgtgaagttcttaaagcataagaacactgggaagattcgtctcgttatgaggcaatctaaaactttgaagatctgtgctaatcacttcgttaaatcgggcatgagtgttcaggaacacgttgggaatgaaaagtcatgtgtgtggcacgctcgtgactttgctgatggtgaactcaaggatgagcttttctgtatccgatttgcttctattgagaattgcaaaacatttatgcaaaagttcaaggaagttgctgagtctgaagaagagaaagaagagagcaaagatgccgctgacactgctggccttcttgagaaattgactgtggaagagacaaaaacggaggagaaaaccgaagcgaaagctgtggagacggcaaagactgaagtgaaagcagaagaaaagaaagagagcgaggcagagaaatctggtgaagcaaagaaaacagaagaaagtggtccctcaacataagaagcgtcatcatttaagttgccaaatcctggcgaggtaattaagcctcgaaatgttttgatgcatcatgagtctaccattgtcttggcactatctatctatacatgttttgtcgagtcatatcaagtggttgggggatcgcttggggtcgggttttactgaatgctgagtcgttatgggtctaatagtttttgagtctaaagtgtcgggtgatatgagagatttgggtgaaatattttttcatgttggttatctgaaagagtacattggtttcattgttttaagttttctcatggatcctttttggatggtcttattttgaggatacaaatgtgtttgtccatggacaagaatcagaagtctccattttttttttttcaaaatttaatgcatgtgattttttaatcttaaggtaattgccaattgtttgacaaaaaaaaggtaattgccaatctactttgctctcttgtgttagtcgatgctagtcttgaccctgataaagatccaaaatgtatattaacagtattcataaaattcttcagttataacgaactgttcacggaaaaaaaatgacattgtactatactgtgctaaaattaccaaagcatgatttatataaatcatatccagtaagaccatatgtgaatgaataacaatggattatgcttaggttaagatttt

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