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Previous release (v1)
2024-04-20 04:30:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_099986 6276 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana dicer-like 1 (DCL1), mRNA.
ACCESSION NM_099986
VERSION NM_099986.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 6276)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 6276)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6276)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 6276)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 6276)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_099986.3.
FEATURES Location/Qualifiers
source 1..6276
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..6276
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="Encodes a Dicer homolog. Dicer is a RNA helicase
involved in microRNA processing. Mutations in this locus
can result in embryo lethality. Embryo shape at seed
maturity is globular-elongate. Other mutants convert the
floral meristems to an indeterminate state, others yet
show defects in ovule development. mRNA is expressed in
all shoot tissues. DCL1 is able to produce miRNAs and
siRNAs."
/db_xref="Araport:AT1G01040"
/db_xref="GeneID:839574"
/db_xref="TAIR:AT1G01040"
CDS 399..6128
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/inference="Similar to RNA sequence,
EST:INSD:EH948322.1,INSD:EH830906.1,INSD:EG522515.1,
INSD:BP571785.1,INSD:AI100063.1,INSD:EL120669.1,
INSD:EH988836.1,INSD:DR373797.1,INSD:BP629851.1,
INSD:AI996152.1,INSD:EH866522.1,INSD:EL096532.1,
INSD:EL281260.1,INSD:AV806514.1,INSD:AV815743.1,
INSD:ES104193.1,INSD:AV783898.1,INSD:DR380507.1,
INSD:BP575972.1,INSD:ES185316.1,INSD:H36434.1,
INSD:ES210801.1,INSD:BP563653.1,INSD:EH902174.1,
INSD:Z29202.1,INSD:BP789125.1,INSD:BP655894.1,
INSD:EL137132.1,INSD:BP568979.1,INSD:BP783219.1,
INSD:ES098400.1,INSD:BP787533.1,INSD:EH971167.1,
INSD:AV787299.1,INSD:AV781745.1,INSD:EH901232.1,
INSD:AV535286.1,INSD:BU636534.1,INSD:ES159107.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF187317.1,INSD:AF292940.1"
/note="dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s:
Restriction endonuclease, type I, R subunit/Type III, Res
subunit (InterPro:IPR006935), Double-stranded RNA-binding
(InterPro:IPR001159), Argonaute/Dicer protein, PAZ
(InterPro:IPR003100), Ribonuclease III
(InterPro:IPR000999), Double-stranded RNA-binding-like
(InterPro:IPR014720), DEAD-like helicase, N-terminal
(InterPro:IPR014001), DNA/RNA helicase, C-terminal
(InterPro:IPR001650), Helicase, superfamily 1/2,
ATP-binding domain (InterPro:IPR014021), Dicer
double-stranded RNA-binding fold (InterPro:IPR005034);
BEST Arabidopsis thaliana protein match is: dicer-like 3
(TAIR:AT3G43920.2); Has 21958 Blast hits to 17420 proteins
in 2982 species: Archae - 328; Bacteria - 11461; Metazoa -
3615; Fungi - 1668; Plants - 1373; Viruses - 45; Other
Eukaryotes - 3468 (source: NCBI BLink)."
/codon_start=1
/product="dicer-like 1"
/protein_id="NP_171612.1"
/db_xref="Araport:AT1G01040"
/db_xref="GeneID:839574"
/db_xref="TAIR:AT1G01040"
/translation="
MVMEDEPREATIKPSYWLDACEDISCDLIDDLVSEFDPSSVAVNESTDENGVINDFFGGIDHILDSIKNGGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKRDEFSKEEGDKDRKRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNKKKRECNNYRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEENKSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFAILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEVEEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKTFS"
misc_feature 729..>1055
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="splicing factor, CC1-like family; Region: SF-CC1;
TIGR01622"
/db_xref="CDD:273721"
misc_feature 1140..1739
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="DEXH-box helicase domain of endoribonuclease Dicer;
Region: DEXHc_dicer; cd18034"
/db_xref="CDD:350792"
misc_feature order(1140..1148,1155..1157,1206..1229,1344..1346,
1533..1535,1635..1637)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350792"
misc_feature order(1308..1313,1380..1385,1458..1460,1464..1469,
1476..1478,1551..1559)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="nucleic acid binding site [nucleotide binding];
other site"
/db_xref="CDD:350792"
misc_feature 2331..2723
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="C-terminal helicase domain of the endoribonuclease
Dicer; Region: SF2_C_dicer; cd18802"
/db_xref="CDD:350189"
misc_feature order(2412..2420,2592..2594,2649..2651,2655..2657)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:350189"
misc_feature order(2604..2606,2610..2612,2685..2687,2691..2693)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350189"
misc_feature 2916..3179
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="Dicer dimerization domain; Region: Dicer_dimer;
pfam03368"
/db_xref="CDD:427264"
misc_feature 3924..4358
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="PAZ domain, CAF_like subfamily. CAF (for carpel
factory) is a plant homolog of Dicer. CAF has been
implicated in flower morphogenesis and in early
Arabidopsis development and might function through
posttranscriptional regulation of specific mRNA...;
Region: PAZ_CAF_like; cd02844"
/db_xref="CDD:239210"
misc_feature order(4074..4076,4161..4163,4173..4175,4227..4229,
4317..4319,4323..4325)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="nucleic acid-binding interface [nucleotide
binding]; other site"
/db_xref="CDD:239210"
misc_feature 4467..5006
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="Ribonuclease III C terminal domain. This group
consists of eukaryotic, bacterial and archeal ribonuclease
III (RNAse III) proteins. RNAse III is a double stranded
RNA-specific endonuclease. Prokaryotic RNAse III is
important in post-transcriptional...; Region: RIBOc;
cd00593"
/db_xref="CDD:238333"
misc_feature order(4521..4526,4533..4538,4545..4547,4554..4559,
4566..4571,4575..4583,4611..4613,4938..4940,4965..4967)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature order(4521..4523,4530..4532,4542..4544,4908..4910,
4917..4919)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="active site"
/db_xref="CDD:238333"
misc_feature order(4530..4532,4908..4910,4917..4919)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238333"
misc_feature 5121..5588
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="Ribonuclease III C terminal domain. This group
consists of eukaryotic, bacterial and archeal ribonuclease
III (RNAse III) proteins. RNAse III is a double stranded
RNA-specific endonuclease. Prokaryotic RNAse III is
important in post-transcriptional...; Region: RIBOc;
cd00593"
/db_xref="CDD:238333"
misc_feature order(5178..5183,5190..5195,5202..5204,5211..5216,
5223..5228,5232..5240,5268..5270,5505..5507,5538..5540)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature order(5178..5180,5187..5189,5199..5201,5475..5477,
5484..5486)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="active site"
/db_xref="CDD:238333"
misc_feature order(5187..5189,5475..5477,5484..5486)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238333"
misc_feature 5598..5750
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="Double-stranded RNA binding motif; Region: DSRM;
smart00358"
/db_xref="CDD:214634"
misc_feature 5907..6116
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="double-stranded RNA binding motif of plant
Dicer-like proteins; Region: DSRM_DCL_plant; cd19869"
/db_xref="CDD:380698"
misc_feature order(5907..5912,5919..5924,5937..5942,5970..5984,
5988..5990,6057..6068,6075..6080)
/gene="DCL1"
/locus_tag="AT1G01040"
/gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF;
CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76;
EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT
INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4;
T25K16_4"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:380698"
ORIGIN
gtggaaaacagaccagaagagagaggaagacgaagagagaaacagaacagagtagggatcgatagaccgtggaatctcagaatcacaaacactttgcaaaagggttttcaattcctatttatttacaaagaaatcatcaatagtagtggtctctagggttttgcttgctcttcttcgtgacccctttttacctgcaaacaacaacttcaaaattggcgtgtttcgtacggtctatctaaccctaatctgtcacaaaacactcttcttctctcacccctttttctgggtttattcaattctcgtgcttttggttctgttttcttctctggggatttggttttcttgagtgagtttttctcctctttcttatgttcttgatttgattattatatagaattatggtaatggaggatgagcctagagaagccacaataaagccttcttattggctagatgcttgcgaggacatctcttgtgatcttatcgatgatctcgtgtctgaatttgatccttcctctgttgctgtcaatgaatccactgatgaaaacggcgtcatcaatgattttttcggtgggattgatcacattttagatagtatcaagaacggtggaggcttaccaaacaatggcgtttctgataccaattctcaaatcaacgaggttactgtaactcctcaggttattgctaaggagacagtgaaggagaatgggttgcaaaagaatggcggtaagagagacgaattctcgaaagaggaaggagacaaggataggaagagagctagggtttgtagttatcagagtgaaaggagtaacctttcaggtagagggcatgttaataattctagggagggagataggtttatgaataggaaacgtactcgtaattgggacgaggcgggtaacaataagaagaaaagggaatgtaacaattacagaagagatggtagagatagagaagttaggggttattgggagagggataaagttggttccaatgagttggtttataggtcagggacttgggaagctgatcatgaaagagatgttaagaaagtgagtggtggaaaccgcgaatgcgatgtcaaggcagaggagaacaagagtaagcctgaagaacgtaaagagaaggttgtggaagagcaagcaaggcgataccagttggatgttcttgaacaagctaaagcgaaaaacacgattgctttccttgagaccggtgctggaaagacacttatcgcgattcttcttattaaaagtgttcataaggatctgatgagccagaacagaaaaatgctctcggtgttcttggttcccaaagtgcctttggtttatcagcaagcagaagtgatccgtaatcaaacttgttttcaagttggacattattgtggtgagatgggacaggacttttgggattctcgaaggtggcaacgagagtttgagtctaagcaggttctagttatgacagcacaaattctgttgaatatactgagacacagtatcattagaatggaaacaattgatcttcttattctcgacgagtgtcaccacgctgtcaagaaacatccatactctttagtgatgtcagagttttaccatacaactcctaaagataaaagacctgccatctttggaatgactgcttcgcctgttaatttaaagggtgtttcaagccaagtagattgtgcgataaagatacgtaacctcgagaccaagttggattctacggtttgtactataaaagatcgaaaagaattagagaaacatgtgcctatgccttcagagatagtcgtcgagtatgacaaagctgctactatgtggtctcttcatgagacaataaagcaaatgattgcagctgttgaagaagcggcacaagcaagttcaaggaaaagcaagtggcaatttatgggggctagggatgctggagcaaaggatgaattgagacaggtttatggcgtctctgaaagaacggagagcgatggtgctgccaatttgattcataaacttagagctatcaattatactcttgctgaattgggtcaatggtgtgcttacaaggtgggacaatcattcttgtctgctttgcaaagtgatgagagggtgaatttccaagtcgacgtgaagtttcaagaatcatacctcagtgaggtggtgtcactcttgcaatgtgagcttctggaaggcgctgctgctgaaaaagtcgcggcggaagttggcaaaccagaaaatggtaatgcacatgacgagatggaggagggagagctccctgatgatcctgtggtctcgggaggggagcacgttgatgaagtaataggcgccgcagtggctgatgggaaagttactccaaaagtacaatcattgatcaaactactcctcaaatatcagcacacagctgattttcgagctattgttttcgttgagagggtggttgctgctttggttcttcctaaggtttttgcggagctgccttcgcttagttttatacggtgtgccagcatgattggacacaataacagccaggagatgaaatcatctcaaatgcaggatacaatttccaaattccgagatgggcatgtgacactgttagttgccacaagcgttgctgaggaaggacttgatattaggcaatgtaacgttgttatgcgtttcgaccttgcaaagacggtgctggcatacattcagtctcgtggccgggcaagaaagcctggatcagactacatactcatggttgagagaggaaatgtatctcacgcagcgttcctaaggaatgctaggaacagtgaggagacacttcgaaaagaagcaatagaaaggactgatcttagtcatctcaaagatacatcgagattaatctcaattgatgctgtgcctggtacagtttataaggtggaggcaactggtgccatggttagcttgaattccgcggttggtcttgtacatttctactgctctcagcttcctggtgacaggtatgcaatccttcgtcctgagtttagcatggagaagcatgaaaagcctgggggccacacggaatattcatgtaggcttcagcttccttgcaatgcaccgtttgaaatacttgagggtcctgtttgcagttcaatgcgtcttgcacaacaggctgtatgtttagctgcttgcaagaaactgcatgagatgggtgcatttaccgatatgctattaccggacaaaggaagtggtcaagacgctgagaaggctgaccaagatgatgaaggtgagcctgttcctggaactgctagacatagagagttctatcctgaaggtgtggcggatgtacttaagggagaatgggtttcatctggaaaggaagtttgtgagagctcaaagctattccatttatacatgtataatgtcagatgtgtagattttggctcttcaaaagatccattcctaagcgaagtttcagagttcgcgattctttttggcaatgagctggatgcagaggtattatcgatgtctatggatctttatgttgctcgggccatgatcactaaagcatctcttgctttcaagggatcacttgatattacagaaaaccagctatcatctctaaaaaagtttcatgtgaggttaatgagtatcgtgttggatgttgatgttgaaccctccacgacaccatgggatcctgcaaaggcctacctgtttgtccctgttactgacaatacgtctatggaacccataaaagggatcaactgggaattggttgaaaagattacgaaaaccacagcgtgggacaaccctcttcagagagctcgtcccgatgtatatctcgggactaatgagagaactcttggtggggacagaagggaatatgggtttggtaaacttcgtcacaacattgtatttgggcagaaatctcacccaacttatggtattagaggagctgttgcatccttcgatgttgtgagagcttctggattgttacctgtgagagatgcttttgagaaggaagtagaagaggatttatcaaaaggaaaattgatgatggctgatgggtgcatggttgcagaagatcttattgggaaaatagtgacagccgcacattccgggaagcggttttacgtagattcaatttgttatgacatgagtgcagaaacatctttccctaggaaagagggatatcttggtcccctagagtacaacacgtacgctgactattacaagcaaaagtatggagttgatttgaactgtaagcaacaacctttgattaaaggacgtggtgtttcgtattgcaagaaccttctttctcctcggtttgaacagtcaggtgaatctgagacagtccttgataagacatattacgtgtttcttccacctgaactatgcgttgtgcatccgctttcgggttcacttatccgaggtgctcagaggttaccctctataatgagaagagttgagagcatgttactcgctgttcaactcaaaaatttgattagttatcctattcccacatcaaagattcttgaagccttgactgccgcctcgtgccaggaaacgttctgctacgagagagctgagcttttaggagatgcgtatctaaaatgggttgttagtcgttttctgtttctcaagtatcctcaaaagcacgagggtcagcttacaaggatgaggcaacaaatggttagtaatatggttctttatcagtttgctctggttaaagggcttcagtcatatatccaggcggatcgattcgccccgtctaggtggtctgctcctggtgtgcctccggttttcgacgaggacacaaaagatggaggatcttcgtttttcgatgaagagcaaaaacctgtttccgaggaaaacagcgatgtgtttgaagatggggagatggaggatggtgaactagagggtgatttgagttcgtaccgagttttatctagcaaaacgttagctgatgttgttgaggctttgattggtgtttattacgtcgaagggggtaagattgcagctaatcatttgatgaaatggattgggattcacgtggaggatgatcctgatgaagtcgatggaacattgaaaaatgttaatgttccagagagtgtgctcaagagcatcgactttgttggtcttgagagagctcttaaatatgagtttaaagagaaaggtcttcttgttgaagctataacacatgcttcaagaccatcttcaggtgtttcgtgttaccagagattggaatttgttggtgacgcggtcttggatcatctcatcacaagacatctatttttcacatacacaagccttcctcctggtcggttaacagatcttcgagctgcagcggttaacaacgagaattttgctcgcgttgcggttaaacataaactccacttgtaccttcgtcacggttcaagcgccctcgaaaaacagattcgggaatttgtgaaggaggttcaaaccgagtcatcgaaaccggggtttaactcttttggtttgggagactgcaaagcaccaaaagttcttggagacattgttgaatctattgcaggtgctatttttcttgatagtggaaaagatacaactgctgcttggaaggtttttcaacctttgcttcagcccatggtgacaccagagacacttccaatgcatccggtgcgagagctacaagagcggtgccagcaacaagcagaagggttagaatacaaagcgagtaggagtggtaacacagcgactgtggaagttttcatcgacggtgttcaagttggagtagcgcaaaacccgcagaagaaaatggctcaaaagctagctgcgaggaacgcacttgcagctttgaaagagaaagaaatagcagaatcaaaggagaagcatatcaacaacggtaatgcgggagaggatcaaggcgagaatgagaatgggaacaagaagaatgggcatcagccgtttacgagacaaacgttgaatgatatttgtttgaggaagaattggccaatgccttcttacagatgtgtgaaagaaggaggaccggctcatgcaaagagatttacgtttggggtaagagttaatacgagcgatagaggatggaccgatgagtgtattggcgagccaatgccgagtgttaagaaagctaaggattcagctgcggttcttctacttgagcttttaaataaaactttttcttgattcttttactctcttcaacgagatgtagtcattacattttaaaccttaaaaccatagtggttgtagtgttttaattgatctgttgttattcgagtttaattggtttatagaactcttcaaacaaattaaaccaaaaatttcaatgcca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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