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2024-04-29 06:37:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001340217            2085 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family
            protein (AT3G63450), mRNA.
ACCESSION   NM_001340217
VERSION     NM_001340217.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 2085)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2085)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2085)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..2085
                     /locus_tag="AT3G63450"
                     /db_xref="Araport:AT3G63450"
                     /db_xref="GeneID:825520"
                     /db_xref="TAIR:AT3G63450"
     CDS             859..1749
                     /locus_tag="AT3G63450"
                     /codon_start=1
                     /product="RNA-binding (RRM/RBD/RNP motifs) family protein"
                     /protein_id="NP_001327793.1"
                     /db_xref="GeneID:825520"
                     /db_xref="Araport:AT3G63450"
                     /db_xref="TAIR:AT3G63450"
                     /translation="
MDGYSETLVGKMCSRAAALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTKPSRDIMDFQLGGRAFHEDLLWKRRFEERALELQSTRLMNLQLLDVEKQFQLNFDQTLLVSPRLVSNNQRVCTKENDEDTIKLPESLEDDRLVDSPIVSPKHHFLECGVAAETKGSGLSSPSFDQDESSTGTLKEPLKSLKCQMPRLSMMGITQGSSGPTTCRVGI"
     misc_feature    1003..1212
                     /locus_tag="AT3G63450"
                     /note="RNA recognition motif (RRM) found in Arabidopsis
                     thaliana zinc finger CCCH domain-containing protein 46
                     (AtC3H46) and similar proteins; Region: RRM_AtC3H46_like;
                     cd12458"
                     /db_xref="CDD:409891"
     misc_feature    <1030..1455
                     /locus_tag="AT3G63450"
                     /note="RNA recognition motif (RRM) domain [Translation,
                     ribosomal structure and biogenesis]; Region: RRM; COG0724"
                     /db_xref="CDD:223796"
ORIGIN      
agagagagagtgtgtgtgtgtgttttgttgtgaatttgattgcaaaaatccaaagtttgacgctttgacccactcacttgggagttggagcccagaagacacaacagtcactccactcttctttaactcttttttttatttaatttccccacaccacacgactcacgagggaagtggcaactttgatttttgcaagcagaggaggaagaagaagaagtagaaagaagcttaggtatggagtggagtggtacactggtactagagtgatgatggtggtaaggtagttgagaaagaaagcctttttagctttgctaaagtccaagacaagaaaccaaacatctttttgtacacaagacaagacaacaatagcagtgtttctttttcctgccaaagaaagattaagcgagagagagagagacaaggtctcatcgagcaaagagtgtgtttccatggatgtgtacgaagcaactaggatcgtgctctctagaatccagaacttagacccagctaatgcttccaagatcataggtcttctcctccttcaggatcacggtgagaaggagatgataaggttagctttcgggcctcagaatctccttcattctgtcatagccaaggccaaaaaggacctcgaagagcggctttctttcttgactccgagaaccgccgaagattttgagtccgatttagggttcggatggggtcaccgcaaagaggtgcttaggtccaactctgttccgccgagacttgccaatcagttcaccggttatccattctcccccaaaggtgtcaacttgcaacagagtgaagcccaaaggttggagcttttctttttctttatttttttccttcatctgtatggacgggtattctgaaactttggttggtaaaatgtgtagcagagctgctgctttgatgatgggcgatgacttgcacaaattgggaatatggaggccagagaggatcgacctctcggccacggcctgcccggcgtctagacagatctatctgactttcccggctgacagtatcttcagggaagaagatgtttccgactacttcagtacgtttgggccagttcaggacgtgaggataccttaccagcagaagaggatgtttgggttcgtgaccttcatgtacccagagactgtgaagagcattctggccaaagggaaccctcactttgtgtgtcattccagggttcttgttaagccttacaaggagaaaggcaaagtcccagacaagactaagccatccagggacattatggatttccagcttggggggagggcttttcatgaagatctgctgtggaaaaggaggtttgaagaacgagctcttgagctgcagagcacaaggctgatgaatctgcagcttctcgacgtcgagaaacagtttcaactcaatttcgaccaaacactacttgtttctccacgactagtttcaaacaatcagagagtgtgcacaaaagagaatgatgaggatacaatcaaacttccagagagcttggaggatgataggctggtggatagcccaattgtatcaccgaaacaccattttctcgagtgtggggtagctgcagaaacaaagggttcaggcttgtcgtcgccatcttttgatcaggatgagtctagtacaggtacattgaaagagcctctcaagtccttgaagtgccaaatgccgaggttatcaatgatggggataacacagggcagcagcggaccaacaacgtgtcgcgttgggatctaaacccattcaaaacagctaaccagtggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]