LOCUS       NM_001084888            1615 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana ORTHRUS-like protein (ORTHL), mRNA.
ACCESSION   NM_001084888
VERSION     NM_001084888.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 1615)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1615)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1615)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            1..1615
                     /gene="ORTHL"
                     /locus_tag="AT4G08590"
                     /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like;
                     ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6"
                     /db_xref="Araport:AT4G08590"
                     /db_xref="GeneID:826420"
                     /db_xref="TAIR:AT4G08590"
     CDS             36..1430
                     /gene="ORTHL"
                     /locus_tag="AT4G08590"
                     /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like;
                     ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES175588.1,INSD:F14281.1,INSD:ES105076.1,
                     INSD:ES161112.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:BT022101.1"
                     /note="ORTHRUS-like (ORTHL); CONTAINS InterPro DOMAIN/s:
                     SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type
                     (InterPro:IPR001841), Zinc finger, C3HC4 RING-type
                     (InterPro:IPR018957); BEST Arabidopsis thaliana protein
                     match is: Zinc finger (C3HC4-type RING finger) family
                     protein (TAIR:AT1G57820.1); Has 2781 Blast hits to 2709
                     proteins in 231 species: Archae - 0; Bacteria - 14;
                     Metazoa - 1735; Fungi - 182; Plants - 616; Viruses - 10;
                     Other Eukaryotes - 224 (source: NCBI BLink)."
                     /codon_start=1
                     /product="ORTHRUS-like protein"
                     /protein_id="NP_001078357.1"
                     /db_xref="GeneID:826420"
                     /db_xref="TAIR:AT4G08590"
                     /db_xref="Araport:AT4G08590"
                     /translation="

MTRVNQLPCDCVSTAEESLTSGTCITPTHVTSLSSPLDRSGDVDPLPVSDESGGSKADESMTDADETKKRKRILSGDCEADENNKSDGEIASLNDGVDAFTAICEDLNCSLCNQLPDRPVTILCGHNFCLKCFDKWIDQGNQICATCRSTIPDKMAANPRVNSSLVSVIRYVKVAKTAGVGTANFFPFTSNQDGPENAFRTKRAKIGEENAARIYVTVPFDHFGPIPAEHDPVRNQGVLVGESWENRVECRQWGVHLPHVSCIAGQEDYGAQSVVISGGYKDDEDHGEWFLYTGRRGRHFANEDQEFEDLNEALRVSCEMGYPVRVVRSYKDRYSAYAPKEGVRYDGVYRIEKCWRKARFPDSFKVCRYLFVRCDNEPAPWNSDESGDRPRPLPNIPELETASDLFERKESPSWDFDEAEGRWRWMKPPPANHEQRERMKMAMTCLLLFVLIILVGSSSILYQY"

     misc_feature    348..491
                     /gene="ORTHL"
                     /locus_tag="AT4G08590"
                     /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like;
                     ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6"
                     /note="first RING finger, HC subclass, found in
                     Arabidopsis thaliana ORTHRUS and similar proteins; Region:
                     RING-HC_ORTHRUS_rpt1; cd23138"
                     /db_xref="CDD:438500"
     misc_feature    717..1166
                     /gene="ORTHL"
                     /locus_tag="AT4G08590"
                     /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like;
                     ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6"
                     /note="SET and RING finger associated domain; Region: SRA;
                     smart00466"
                     /db_xref="CDD:197742"
ORIGIN      

ttcctctctccgatctttgccgttgctctttcgaaatgacgcgtgtcaaccagcttccatgcgactgtgtatctacggcggaggaatctctcacttccggcacgtgcattacccctacgcacgtgacttccctttcgtctcctcttgatcgctccggcgatgttgatcctcttcctgtttccgacgaatctggtggctcgaaggccgatgaatctatgactgacgcagatgagactaaaaagaggaaacggatactcagtggtgattgtgaagccgatgagaataataagagtgacggagaaatcgcgagtctcaatgacggtgttgatgcgtttactgcgatttgtgaagacttgaattgttctctgtgtaatcaattgcctgataggcccgtcacgatattatgtggacataacttttgcttgaaatgttttgacaagtggattgatcaagggaatcaaatttgtgctacatgtcgtagcacaattcctgacaaaatggctgccaatcctcgtgttaactcgtctcttgtgtctgttatccgttatgtaaaagttgctaaaactgctggtgttggtactgcaaatttttttccttttacaagcaaccaagacggcccagagaatgcctttagaaccaagcgcgctaaaatcggggaggagaatgctgcaaggatatatgttaccgtaccatttgatcactttggtcctataccagctgaacatgatcctgtcaggaaccaaggtgttttagttggagaatcctgggagaatcgagtagagtgtcggcagtggggggttcacttgccacatgtttcttgcattgctggacaagaagactatggagctcagtctgtagtaatatctggaggttataaggatgacgaggatcatggagaatggtttctatacacaggaaggagagggagacatttcgctaacgaggatcaggagtttgaagacttgaatgaagctttaagagttagttgcgaaatggggtatccagttcgagttgtcaggtcttacaaggataggtattctgcatatgcccctaaggaaggagtgagatatgatggtgtatacaggatcgagaaatgctggcgaaaagctagattcccggattcatttaaggtctgtcgttacctgtttgtaagatgtgacaatgagccagctccatggaacagtgatgagagtggagatcgtccaagacctttgcctaatattccagagcttgaaacggcctcagacctgtttgagagaaaggaaagtccatcatgggattttgatgaagccgagggccgttggagatggatgaagcctccacctgcaaatcatgagcagagggagagaatgaagatggctatgacatgtcttctcctttttgtccttatcattctcgttggttcatcatctatcttatatcagtattagaagaatcaccgacaaataacttgttggtttgatcccttagttgtctttcttgttaccaacagtcttttctagttctctcactactcaagtcttggaaacttgaggttctcttggttagtgaagtcggattcatatttttttgtatgcttccaacaatttgtccctgctctcaaaaggtgcaatga

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