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2024-04-24 10:11:59, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Arabidopsis thaliana ARGONAUTE 3 (AGO3), mRNA. (3667 bp)
misc_feature 1077..1289 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1464..1817 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like;...
Synonym: ARGONAUTE 3; T19E23.8; T19E23_8
NM_001332953.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ARGONAUTE 3 (AGO3), mRNA. (3918 bp)
misc_feature 1290..1502 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1677..2030 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like;...
Synonym: ARGONAUTE 3; T19E23.8; T19E23_8
NM_001332952.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Argonaute family protein (AGO4), mRNA. (3189 bp)
gene_synonym="ARGONAUTE 4; OCP11; OVEREXPRESSOR OF CATIONIC PEROXIDASE 11; T20P8.9; T20P8_9" /note="ARGONAUTE 4 (AGO4); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ...misc_feature 286..2925 /gene="AGO4" /locus_tag="AT2G27040" /gene_synonym="ARGONAUTE 4; OCP11; OVEREXPRESSOR OF CATIONIC PEROXIDASE 11; T20P8.9; T20P8_9" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 3189) AUTHORS Lin,X., Kaul,S.,...
Synonym: ARGONAUTE 4; OCP11; OVEREXPRESSOR OF CATIONIC PEROXIDASE 11; T20P8.9; T20P8_9
NM_001202684.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ARGONAUTE 3 (AGO3), partial mRNA. (3841 bp)
misc_feature 1225..1437 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1612..1965 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like;...
Synonym: ARGONAUTE 3; T19E23.8; T19E23_8
NM_102867.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Argonaute family protein (AGO6), mRNA. (3123 bp)
INSD:EL108990.1" /note="ARGONAUTE 6 (AGO6); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Argonaute/Dicer protein, PAZ...misc_feature 227..2818 /gene="AGO6" /locus_tag="AT2G32940" /gene_synonym="ARGONAUTE 6; T21L14.12; T21L14_12" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 3123) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D...
Synonym: ARGONAUTE 6; T21L14.12; T21L14_12
NM_128854.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Argonaute family protein (AGO2), mRNA. (3602 bp)
AK118463.1,INSD:BT005914.1" /note="argonaute 2 (AGO2); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: ARGONAUTE 3 (TAIR:AT1G31290.1); Has 30240 Blast...
Synonym: argonaute 2; AtAGO2; T19E23.7; T19E23_7
NM_102866.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Argonaute family protein (AGO7), mRNA. (3443 bp)
misc_feature 970..1230 /gene="AGO7" /locus_tag="AT1G69440" /gene_synonym="ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1258..1410 /gene="AGO7" /locus_tag="AT1G69440" /gene_synonym="ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1498..1797 /gene="AGO7" /locus_tag="AT1G69440" /gene_synonym="ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:426635"...
Synonym: ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY
NM_105611.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Stabilizer of iron transporter SufD / Polynucleotidyl transferase (AGO10), mRNA. (3796 bp)
ecotype="Columbia" gene 1..3796 /gene="AGO10" /locus_tag="AT5G43810" /gene_synonym="ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE" /note="Encodes Argonaute10, a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to...misc_feature 875..3448 /gene="AGO10" /locus_tag="AT5G43810" /gene_synonym="ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 3796) AUTHORS Tabata,S.,...
Synonym: ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE
NM_001344505.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Stabilizer of iron transporter SufD / Polynucleotidyl transferase (AGO10), mRNA. (3613 bp)
ecotype="Columbia" gene 1..3613 /gene="AGO10" /locus_tag="AT5G43810" /gene_synonym="ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE" /note="Encodes Argonaute10, a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to...misc_feature 692..3265 /gene="AGO10" /locus_tag="AT5G43810" /gene_synonym="ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 3613) AUTHORS Tabata,S.,...
Synonym: ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE
NM_001344506.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Stabilizer of iron transporter SufD / Polynucleotidyl transferase (AGO10), mRNA. (3763 bp)
ecotype="Columbia" gene 1..3763 /gene="AGO10" /locus_tag="AT5G43810" /gene_synonym="ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE" /note="Encodes Argonaute10, a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to...misc_feature 952..3525 /gene="AGO10" /locus_tag="AT5G43810" /gene_synonym="ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 3763) AUTHORS Tabata,S.,...
Synonym: ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE
NM_001203535.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Argonaute family protein (AGO5), mRNA. (3381 bp)
LOCUS NM_179779 3381 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Argonaute family protein (AGO5), mRNA. ACCESSION NM_179779 VERSION NM_179779.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis...misc_feature 501..3101 /gene="AGO5" /locus_tag="AT2G27880" /gene_synonym="ARGONAUTE 5; AtAGO5; T1E2.20; T1E2_20" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 3381) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C...
Synonym: ARGONAUTE 5; AtAGO5; T1E2.20; T1E2_20
NM_179779.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Stabilizer of iron transporter SufD / Polynucleotidyl transferase (AGO10), mRNA. (3668 bp)
ecotype="Columbia" gene 1..3668 /gene="AGO10" /locus_tag="AT5G43810" /gene_synonym="ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE" /note="Encodes Argonaute10, a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to...misc_feature 747..3320 /gene="AGO10" /locus_tag="AT5G43810" /gene_synonym="ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 3668) AUTHORS Tabata,S.,...
Synonym: ARGONAUTE 10; ARGONAUTE PROTEIN 10; MQD19.17; MQD19_17; PINHEAD; PNH; ZLL; ZWILLE
NM_123748.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Argonaute family protein (AGO4), mRNA. (3236 bp)
LOCUS NM_128262 3236 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Argonaute family protein (AGO4), mRNA. ACCESSION NM_128262 VERSION NM_128262.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis...misc_feature 301..2940 /gene="AGO4" /locus_tag="AT2G27040" /gene_synonym="ARGONAUTE 4; OCP11; OVEREXPRESSOR OF CATIONIC PEROXIDASE 11; T20P8.9; T20P8_9" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 3236) AUTHORS Lin,X., Kaul,S.,...
Synonym: ARGONAUTE 4; OCP11; OVEREXPRESSOR OF CATIONIC PEROXIDASE 11; T20P8.9; T20P8_9
NM_128262.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Argonaute family protein (AGO9), mRNA. (3075 bp)
LOCUS NM_122122 3075 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Argonaute family protein (AGO9), mRNA. ACCESSION NM_122122 VERSION NM_122122.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis...misc_feature 165..2804 /gene="AGO9" /locus_tag="AT5G21150" /gene_synonym="ARGONAUTE 9; T10F18.180; T10F18_180" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 3075) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu...
Synonym: ARGONAUTE 9; T10F18.180; T10F18_180
NM_122122.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Stabilizer of iron transporter SufD / Polynucleotidyl transferase (AGO1), mRNA. (3407 bp)
locus_tag="AT1G48410" /gene_synonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="ARGONAUTE 1 (AGO1); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ...ynonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="Glycine-rich region of argonaut; Region: Gly-rich_Ago1; pfam12764" /db_xref="CDD:432767" misc_feature 664..3327 /gene="AGO1" /locus_tag="AT1G48410" /gene_synonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="protein argonaute;...
Synonym: ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2
NM_001198240.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Stabilizer of iron transporter SufD / Polynucleotidyl transferase (AGO1), mRNA. (3531 bp)
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein...ynonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="Glycine-rich region of argonaut; Region: Gly-rich_Ago1; pfam12764" /db_xref="CDD:432767" misc_feature 669..3326 /gene="AGO1" /locus_tag="AT1G48410" /gene_synonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="protein argonaute;...
Synonym: ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2
NM_103737.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Stabilizer of iron transporter SufD / Polynucleotidyl transferase (AGO1), mRNA. (3615 bp)
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein...ynonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="Glycine-rich region of argonaut; Region: Gly-rich_Ago1; pfam12764" /db_xref="CDD:432767" misc_feature 700..3363 /gene="AGO1" /locus_tag="AT1G48410" /gene_synonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="protein argonaute;...
Synonym: ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2
NM_179453.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. (2628 bp)
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein...misc_feature 1..2550 /locus_tag="AT5G21030" /gene_synonym="T10F18.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 2628) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T.,...
Synonym: T10F18.3
NM_122111.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. (2565 bp)
misc_feature 1..2562 /locus_tag="AT5G21030" /gene_synonym="T10F18.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 2565) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,...
Synonym: T10F18.3
NM_001343695.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 4 (DCL4), mRNA. (5649 bp)
locus_tag="AT5G20320" /gene_synonym="ATDCL4; dicer-like 4; DICER-LIKE 4; F5O24.210; F5O24_210" /note="dicer-like 4 (DCL4); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034),...
Synonym: ATDCL4; dicer-like 4; DICER-LIKE 4; F5O24.210; F5O24_210
NM_001203419.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 3 (DCL3), mRNA. (4890 bp)
AT3G43920" CDS 149..4861 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="dicer-like 3 (DCL3); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: dicer-like 1 (TAIR:AT1G01040.1); Has 13599 Blast hits...
Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_001161191.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 3 (DCL3), partial mRNA. (4596 bp)
INSD:ES088132.1,INSD:EG422292.1, INSD:EG422300.1" /inference="Similar to RNA sequence, mRNA:INSD:DQ479972.1" /note="dicer-like 3 (DCL3); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: dicer-like 4 (TAIR:AT5G20320.1); Has 13386 Blast hits to...
Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_114260.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 3 (DCL3), partial mRNA. (4743 bp)
INSD:EG422302.1,INSD:EG422290.1,INSD:EG422304.1, INSD:EG422298.1,INSD:ES088132.1,INSD:EG422292.1, INSD:EG422300.1" /note="dicer-like 3 (DCL3); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: dicer-like 1 (TAIR:AT1G01040.1); Has 13510 Blast...
Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_001161190.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 4 (DCL4), mRNA. (5666 bp)
INSD:ES037607.1,INSD:AV547573.1,INSD:EH908718.1" /inference="similar to RNA sequence, mRNA:INSD:DQ118423.1" /note="dicer-like 4 (DCL4); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034),...
Synonym: ATDCL4; dicer-like 4; DICER-LIKE 4; F5O24.210; F5O24_210
NM_122039.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 2 (DCL2), mRNA. (4628 bp)
of ta-siRNAs involved in RNA interference; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain...
Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_001202869.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 2 (DCL2), partial mRNA. (4125 bp)
of ta-siRNAs involved in RNA interference; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match...
Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_001084632.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 2 (DCL2), mRNA. (4824 bp)
of ta-siRNAs involved in RNA interference; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain...
Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_111200.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 1 (DCL1), mRNA. (5877 bp)
DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4" /note="dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold...
Synonym: ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF; CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4
NM_001197952.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 1 (DCL1), mRNA. (6276 bp)
INSD:ES159107.1" /inference="similar to RNA sequence, mRNA:INSD:AF187317.1,INSD:AF292940.1" /note="dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain...
Synonym: ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF; CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4
NM_099986.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/at/Argonaute
lang : en | div : | spe : at | query_string : Argonaute | format : html | download : 

0.000 | 0.000 | search_start;
0.080 | 0.080 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Arabidopsis thaliana (thale cress)?to=0&format=json
0.170 | 0.090 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Arabidopsis thaliana (thale cress)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.173 | 0.004 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]