GGRNA | Results

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Arabidopsis thaliana testis- and ovary-specific PAZ domain protein (AT5G20120), mRNA. (1413 bp)

LOCUS NM_001343639 1413 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana testis- and ovary-specific PAZ domain protein (AT5G20120), mRNA. ACCESSION NM_001343639 VERSION NM_001343639.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This record has...

Synonym: F5O24.10; F5O24_10
NM_001343639.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. (2628 bp)

LOCUS NM_122111 2628 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. ACCESSION NM_122111 VERSION NM_122111.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ:...

Synonym: T10F18.3
NM_122111.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana testis- and ovary-specific PAZ domain protein (AT5G20120), mRNA. (1324 bp)

LOCUS NM_122019 1324 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana testis- and ovary-specific PAZ domain protein (AT5G20120), mRNA. ACCESSION NM_122019 VERSION NM_122019.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been...

Synonym: F5O24.10; F5O24_10
NM_122019.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. (2565 bp)

LOCUS NM_001343695 2565 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. ACCESSION NM_001343695 VERSION NM_001343695.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE COMMENT REVIEWED...

Synonym: T10F18.3
NM_001343695.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana ARGONAUTE 3 (AGO3), mRNA. (3667 bp)

gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1464..1817 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

Synonym: ARGONAUTE 3; T19E23.8; T19E23_8
NM_001332953.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana ARGONAUTE 3 (AGO3), mRNA. (3918 bp)

gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1677..2030 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

Synonym: ARGONAUTE 3; T19E23.8; T19E23_8
NM_001332952.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana ARGONAUTE 3 (AGO3), partial mRNA. (3841 bp)

gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1612..1965 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

Synonym: ARGONAUTE 3; T19E23.8; T19E23_8
NM_102867.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana Argonaute family protein (AGO2), mRNA. (3602 bp)

AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1417..1737 /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:426635" misc_feature order(1504..1506,1549..1551,1597..1599,1609..1611, 1663..1665,1684..1686,1690..1692) /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="nucleic acid-binding interface [nucleotide binding];...

Synonym: argonaute 2; AtAGO2; T19E23.7; T19E23_7
NM_102866.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana Argonaute family protein (AGO7), mRNA. (3443 bp)

locus_tag="AT1G69440" /gene_synonym="ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1498..1797 /gene="AGO7" /locus_tag="AT1G69440" /gene_synonym="ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:426635" misc_feature order(1570..1572,1615..1617,1645..1647,1657..1659, 1711..1713,1729..1731,1735..1737) /gene="AGO7" /locus_tag="AT1G69440" /gene_synonym="ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY" /note="nucleic acid-binding interface...

Synonym: ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY
NM_105611.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 3 (DCL3), partial mRNA. (4679 bp)

gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2601..3017 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature...

Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_001339115.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 3 (DCL3), partial mRNA. (4244 bp)

gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 1971..2387 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature...

Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_001339116.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 2 (DCL2), mRNA. (3700 bp)

AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 1858..2250 /gene="DCL2" /locus_tag="AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" misc_...

Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_001337464.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 3 (DCL3), partial mRNA. (4871 bp)

gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2598..3014 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature...

Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_001339114.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 3 (DCL3), mRNA. (4890 bp)

gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2588..3004 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature...

Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_001161191.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 3 (DCL3), partial mRNA. (4596 bp)

gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2323..2739 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature...

Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_114260.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 3 (DCL3), partial mRNA. (4743 bp)

gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2470..2886 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_feature...

Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_001161190.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 2 (DCL2), mRNA. (4628 bp)

AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2740..3132 /gene="DCL2" /locus_tag="AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_...

Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_001202869.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 2 (DCL2), partial mRNA. (4125 bp)

AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2377..2769 /gene="DCL2" /locus_tag="AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" misc_...

Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_001084632.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 2 (DCL2), mRNA. (4824 bp)

AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2982..3374 /gene="DCL2" /locus_tag="AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_...

Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_111200.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 1 (DCL1), mRNA. (5877 bp)

misc_feature 3632..4066 /gene="DCL1" /locus_tag="AT1G01040" /gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF; CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_...

Synonym: ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF; CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4
NM_001197952.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Arabidopsis thaliana dicer-like 1 (DCL1), mRNA. (6276 bp)

misc_feature 3924..4358 /gene="DCL1" /locus_tag="AT1G01040" /gene_synonym="ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF; CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA...; Region: PAZ_CAF_like; cd02844" /db_xref="CDD:239210" misc_...

Synonym: ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF; CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4
NM_099986.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.086 | 0.086 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Arabidopsis thaliana (thale cress)?to=0&format=json
0.148 | 0.062 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Arabidopsis thaliana (thale cress)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.150 | 0.002 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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