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Previous release (v1)
2025-12-08 09:58:52, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_012664188 1580 bp RNA linear VRT 11-JUL-2025
DEFINITION PREDICTED: Phalacrocorax aristotelis homeobox B8 (HOXB8),
transcript variant X3, misc_RNA.
ACCESSION XR_012664188
VERSION XR_012664188.1
DBLINK BioProject: PRJNA1289118
KEYWORDS RefSeq.
SOURCE Phalacrocorax aristotelis
ORGANISM Phalacrocorax aristotelis
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Suliformes;
Phalacrocoracidae; Phalacrocorax.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_134298) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_949628215.1-RS_2025_07
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.4
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 07/10/2025
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1580
/organism="Phalacrocorax aristotelis"
/mol_type="transcribed RNA"
/db_xref="taxon:126867"
/chromosome="23"
gene 1..1580
/gene="HOXB8"
/note="homeobox B8; Derived by automated computational
analysis using gene prediction method: Gnomon. Supporting
evidence includes similarity to: 15 long SRA reads, and
100% coverage of the annotated genomic feature by RNAseq
alignments, including 13 samples with support for all
annotated introns"
/db_xref="GeneID:142067930"
misc_RNA 1..1580
/gene="HOXB8"
/product="homeobox B8, transcript variant X3"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
/db_xref="GeneID:142067930"
ORIGIN
gccagcggccttggagaggaggcggagagctcggagcaaagcccttctccgacccagcttttcccctggatgcgaccgcaaggagcctttccctctccctgtttgcttcctgcctttgctcctgcgagtcctttcttcctccccctcccgtgcctgtgtgtgtgcgtgtgtgtgtgtctgagtgtgtgtgtctgagtgtgtgcgtgagcgggtgcgagtgtgtgtgagctggtgcgagtgtgtgtgagctggtgcgagtgtgtgtgagctggtgtgagcctgtgtgcgcccattcccgagcctggtttatgtatctttcaacctccttctcttcctcccctcttccacccaacctttgcaattccccagcagccgctggacggaggagggggaggcaaacctacagccgctaccagacgctggaactggagaaggaatttctatttaatccctacctgacccgcaaacggaggatcgaggtctcgcatgccctgggattgacagaaaggcaggtcaaaatctggttccagaacaggaggatgaaatggaaaaaggaaaacaacaaagacaagtttcccagcagcaaatgcgagcaggaagaactggaaaaacagaaaatggaaagagcccaggaggtggacgaggaaggggaagcacagaaggcggacaagaaataaaaggatttttaaggactgaaaaggcaagcgctgctggggtggaagagcccccgagccccacgttaatggcagttagtgtaagggaggggtgggaaaaaaaccaacaatgcatagaaaagagaaaggaaaaaaaaaaaaaaccttttattgctgtaaaacaatatagctgtaagcaccactttcctgattatcctttgatacaatgaacagtatgcaaaagtgatcgggaggtctctcctgccttttgccagttattaactagtggtagtgtaacgcaatagcttatgtaaaacatgactgtgaaattttctctctctctctgtctttctctctgtctctctcttctttcctggggggtgggttgattaacatagctttcaatgctataggagttacgtgaaattacatttgtgcacttttttttttttaattattattttccaccttttttgttgtggtttatctgtatgtactggaggtagctattgaaacaaacatcccaacaacatgaaactgcctatttatgctatagttatctctccctttctctctcttcctctctttactttccttacttctcttcttttctttggttcgggatttattttttgttttggtttgtttttgtttacaatttttgaatgtctcttccaaaaaaaaggaaaaaaagacaaaaaaagacaagaaaaaaaagcgtttttctctcctttagttagcatgcgcacagtgaagcaagttgtaaagtgatctttaggttaactgtgaaaaagaatgtatactgtatacgtgaattactttattgggggaactaatgatatattttgttgttctttcatcactttgttctattgtctaaacctggaagcggcggaagaaagttacaataaagtttacaagcgagaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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