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2025-12-08 09:58:52, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XR_012664188            1580 bp    RNA     linear   VRT 11-JUL-2025
DEFINITION  PREDICTED: Phalacrocorax aristotelis homeobox B8 (HOXB8),
            transcript variant X3, misc_RNA.
ACCESSION   XR_012664188
VERSION     XR_012664188.1
DBLINK      BioProject: PRJNA1289118
KEYWORDS    RefSeq.
SOURCE      Phalacrocorax aristotelis
  ORGANISM  Phalacrocorax aristotelis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Suliformes;
            Phalacrocoracidae; Phalacrocorax.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_134298) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_949628215.1-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/10/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Phalacrocorax aristotelis"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:126867"
                     /chromosome="23"
     gene            1..1580
                     /gene="HOXB8"
                     /note="homeobox B8; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 15 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 13 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:142067930"
     misc_RNA        1..1580
                     /gene="HOXB8"
                     /product="homeobox B8, transcript variant X3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:142067930"
ORIGIN      
gccagcggccttggagaggaggcggagagctcggagcaaagcccttctccgacccagcttttcccctggatgcgaccgcaaggagcctttccctctccctgtttgcttcctgcctttgctcctgcgagtcctttcttcctccccctcccgtgcctgtgtgtgtgcgtgtgtgtgtgtctgagtgtgtgtgtctgagtgtgtgcgtgagcgggtgcgagtgtgtgtgagctggtgcgagtgtgtgtgagctggtgcgagtgtgtgtgagctggtgtgagcctgtgtgcgcccattcccgagcctggtttatgtatctttcaacctccttctcttcctcccctcttccacccaacctttgcaattccccagcagccgctggacggaggagggggaggcaaacctacagccgctaccagacgctggaactggagaaggaatttctatttaatccctacctgacccgcaaacggaggatcgaggtctcgcatgccctgggattgacagaaaggcaggtcaaaatctggttccagaacaggaggatgaaatggaaaaaggaaaacaacaaagacaagtttcccagcagcaaatgcgagcaggaagaactggaaaaacagaaaatggaaagagcccaggaggtggacgaggaaggggaagcacagaaggcggacaagaaataaaaggatttttaaggactgaaaaggcaagcgctgctggggtggaagagcccccgagccccacgttaatggcagttagtgtaagggaggggtgggaaaaaaaccaacaatgcatagaaaagagaaaggaaaaaaaaaaaaaaccttttattgctgtaaaacaatatagctgtaagcaccactttcctgattatcctttgatacaatgaacagtatgcaaaagtgatcgggaggtctctcctgccttttgccagttattaactagtggtagtgtaacgcaatagcttatgtaaaacatgactgtgaaattttctctctctctctgtctttctctctgtctctctcttctttcctggggggtgggttgattaacatagctttcaatgctataggagttacgtgaaattacatttgtgcacttttttttttttaattattattttccaccttttttgttgtggtttatctgtatgtactggaggtagctattgaaacaaacatcccaacaacatgaaactgcctatttatgctatagttatctctccctttctctctcttcctctctttactttccttacttctcttcttttctttggttcgggatttattttttgttttggtttgtttttgtttacaatttttgaatgtctcttccaaaaaaaaggaaaaaaagacaaaaaaagacaagaaaaaaaagcgtttttctctcctttagttagcatgcgcacagtgaagcaagttgtaaagtgatctttaggttaactgtgaaaaagaatgtatactgtatacgtgaattactttattgggggaactaatgatatattttgttgttctttcatcactttgttctattgtctaaacctggaagcggcggaagaaagttacaataaagtttacaagcgagaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]