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2025-08-29 09:12:11, GGRNA.v2 : RefSeq release 231 (Jul, 2025)

LOCUS       XR_011603027            3437 bp    RNA     linear   VRT 24-JAN-2025
DEFINITION  PREDICTED: Chaetodon trifascialis NRDE-2, necessary for RNA
            interference, domain containing (nrde2), transcript variant X2,
            misc_RNA.
ACCESSION   XR_011603027
VERSION     XR_011603027.1
DBLINK      BioProject: PRJNA1210627
KEYWORDS    RefSeq.
SOURCE      Chaetodon trifascialis (chevron butterflyfish)
  ORGANISM  Chaetodon trifascialis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Chaetodontiformes; Chaetodontidae;
            Chaetodon.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_092069) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_039877785.1-RS_2025_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/22/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3437
                     /organism="Chaetodon trifascialis"
                     /mol_type="transcribed RNA"
                     /isolate="fChaTrf1"
                     /db_xref="taxon:109706"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="heart, liver"
                     /dev_stage="adult"
                     /geo_loc_name="Saudi Arabia: Red Sea"
                     /lat_lon="22.307781 N 38.967423 E"
                     /collection_date="2019-07-20"
                     /collected_by="Jessica Nowicki"
     gene            1..3437
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read"
                     /db_xref="GeneID:139341999"
     misc_RNA        1..3437
                     /gene="nrde2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /db_xref="GeneID:139341999"
ORIGIN      
ttgtatcatcatggcgctgtttccagctttcgcagaagtagagagcaacaaagttgaagattcgtccaaagatttagactggctgaagaataagagttttcagactggagatgccctctctcttcacaggcagtattttaagaagactgatgagaaggaatcaagtgtggacagagagctgagctctgtggaggaggagacagaagaccagaaagagggttatgctccacccaaaaagaagaaaaagaagagtgaaaagaagaggaagaagaagaaaaaacacaaaaagaagagtgggacgtattcggacagcaatggatctgactctgaaacgatttaccccagtgacctcaaaagggaaaaagaggcagatgggcctcaagctgctccgttagcaagccgtttctcctggctggatgacctccagtcgcccacagagcagctgttctgtgtggaccgtaaagcagaccaagccaactggacgtacaagtccctgtacagaggagatgttgccaggtataagaggaaaggcagctcgtccctgggtctggacccccacagacagggagtcagctgggaggagtcagagtcaaataagaaacagaaaagcagagccaagaaggaagcagcagacagatacttctcgacagtcagttgccagcagctcaggtctgaaccccccgttcctacaatccccaagattcccgagtgcagtgattccttcagccccaccaccttcctcccactgggtgacgatgaggagaacaaaggaggagagacgggtgacagagtggagacatcattcgtaaatcccctcggtgtgtatgactcctccacggccctgtggctgcagggaaggggacagccggagcagacagagcaggagcagaaggacacgcagacggggcagagtgtgcttttggccgggaggactgaagagtttaacaggcgactcagagagcagccagcagacacgcagctctggatcaaattcatacgataccaggatgagctaaatgcgatagcgtttggaggcaaggaggagcaatatggcagcgatgcggctgagcgccgtcactcttcccagcgagcagtcctggaaaaaaagctgagcatcgcagagcgagcagtggccaccaacccctgctgcattgctctgcagctggagaggctcaggatctgtcaagagctctgggagccctcgcttctggctaaagagtggaagaaactggtgttcctccacccaaacagtgcccccttgtggagggagtatctgctgttcacccagagctacttcagcaacttcactgtgccaaaggtcaactctgcctacgggaagtgtctgagcacgctcagtgctgtgcgtgacggcagcatggtgtctcacccagccctgccagggattgaggaggatatgttggatatcttcacccagcagtgtcacttcttgcgtcagtctggtcattcagagaaggcgatttctctgtttcaggccatgatcgattttactttctacaaacccgacagcgtacgagaactgtccaccaagcagcaggttgagttctttgagccattctgggacagcggggaggcgagggtcggagagccgggggccagaggttggaaagcctggatgctccagcaagagcgaggagggtggctacagcccagtgcagaggaagaagaggaggaggacgaggatgaggaggaggtgaaggatcggagccagcccagacacacggtctggttggacgtggagtcgtctcgcgaggcagctcactggctgccctggaggcccgacaaagccaaaggccagtcagaagaggactgcgaggaccctgacagacaggtattgtttgatgacatcggcccctcgctaatttgtctgtcctcaccagagctccagctccgtcttcttctccgtttcttgtcattcctggggctgcctgttgactcggtgctctctgctgccccctgtcagcctggcctgctgctggagaacctttctctgctcactcagggtcatcagctccagcgtcctctgacctctcatgacctacatgactctggggtcaactctgtaggtctcatgaccactctccagggaccaaggaagttggtggggctcgggaagcagggtgagacgtttgtcacccatgtgttcagtatggtccaacccgtccttcctgcccagcaccgagccatcctgtccctcagctggatgcggtacgagaagctcaagatcttgcgctgcctccatggtggcaacaaaaagcgtctccgctctcagggcaagagcagcaaacgagttgccaagcagctcctcaaagaatccgacaaccgctcgtcgttggcactgtggcgggagtacgcccacctggagtggatgcttggcaaccttgacgaggctcgcaaagtcttctccacggccacagctataggggggggcaaagggctgaggagccccaccctctgtgagctgtgtctgctgtgggcccagctggaagtggaggatgggtcaggtgtgcgaggaggagcactgactgatgccaccgtgtccccagctgtgtgtgtactagccaggctagcagaaggaacctcctcatcctcctcttcatcctgccagcccctctccccggtttccatcctgaaagcccggaggtcatatgaacaggctctgactgccggcttgtcagccctggaccaacacccccacagccctcaggcctgcggaaaaggtcaagaggaccttctaggagagaagctgaggctgagaggcctgacaggctgctacgctctgtttcagtacctcactgtgggcatccaagctgctagtgccatctacagccaggccagacagcacatggaggagctgcaccgcacactaatacttgacaagcagctcaacagtaacgaggaggccagcctcgctaacactgatgctagccaagctgtagttgtttccagccatatcagcaggcactatgctaacaggctagcttctgagtgtgaggtattagcagtgcagcaggcgacgttgcttagatatcacaacagcatcgctgtgtttcccctgctaacactgagacaggtgctgacctctgccatcaccacctggccctgcaacgcccccctctggagcatatatgtacaggtggaggaccgttaccacagtgctggccgggcacgtcgcttttttcactctgtaaccagggacaacagcagcgtgttgccgcgtctctttgccattgttgccgaacaaaaaaggaagcagctggtggatgctgctcagaggtaagcgtagaaaagaagatgagcaggtgcagggtcgttctgcactgatggaataagcattgcaacaccttcaaaaggtcttgttgccacgacaccgcattgcccatcctgccagagaacggcctcagtaaccgtatccgtgg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]