GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-12-08 09:45:43, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XR_011517266            3581 bp    RNA     linear   VRT 20-DEC-2024
DEFINITION  PREDICTED: Nothobranchius furzeri dicer 1, ribonuclease type III
            (dicer1), transcript variant X3, misc_RNA.
ACCESSION   XR_011517266
VERSION     XR_011517266.1
DBLINK      BioProject: PRJNA1195976
KEYWORDS    RefSeq.
SOURCE      Nothobranchius furzeri (turquoise killifish)
  ORGANISM  Nothobranchius furzeri
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Nothobranchiidae; Nothobranchius.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091758) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_043380555.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/11/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3581
                     /organism="Nothobranchius furzeri"
                     /mol_type="transcribed RNA"
                     /strain="GRZ-AD"
                     /db_xref="taxon:105023"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="skeletal muscle"
                     /dev_stage="adult"
                     /geo_loc_name="Japan: Osaka"
                     /collection_date="2024-02-02"
     gene            1..3581
                     /gene="dicer1"
                     /note="dicer 1, ribonuclease type III; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 902 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:107395773"
     misc_RNA        1..3581
                     /gene="dicer1"
                     /product="dicer 1, ribonuclease type III, transcript
                     variant X3"
                     /db_xref="GeneID:107395773"
ORIGIN      
ataaataaataaacaaagtaattaattaatttaaaaagtgagtattcagttaaaagctaagctaaaaagatgggtcttcagcctgaacgttcagcagccctgaggtccctggcagctcgttccagaggcgaggaccgtcaccggaaggacgccactccgcacctgcaccgttaccttcggaggcgggccctgctccgtatgctccgtatgcaaggtttctattctcgtaaatttacgctcacgttgtgccgcagcttctaaagctacgcagttagcgtaaacatgtctgtggttagcgtccgtgtttttgcgtagcggaggcccagctgaacgctagttctccccgtggacgagcagcaaatcggaacaagtctggatggcacaaacaattcttcggaaccagtccacgtactttcggttggctcgatctggagcagttaaagcagcaggtctggttccttctgatcattgagaaccaccaggacatcagcagaactctgatcatgtagcccagactactcatcttctctcattgaactctaaaggagaccagaagatgaaataaacatctggaggagctcagccccttcacccctctcccagaagcatggcgggcctacagctcatcactccggccacttcgcccatggggcccttcttcggtctgccatggcagcaggaggccattcacgacaacatctacacaccccggaaatatcaggtggaacttcttgaagcagctcttgaacgcaacacgattgtctgcttgaacacggactcagggaaaactttcatcgccgtgcttctgactaaggagctctcccatcagatcagagggagctaccaggggaatgccaggagaactgtgttcctggtggactcagcgtcgtatgtggttcagcaagcggctgcagtcagaactcactcggacctccaggtgggagaatacacagactgggaggaggcgtcggcgtggacgggtcagcggtggagtcgggagatatgtgacaatcaggttctggtgatgacgtgccacgtgttcctgcatgttctgaagaacgacatcctgccgttgtctaagatcaacctgctggtgtttgatgattgtcacctggccatcacagagcacccatatggtgacatcatgaagctgtttaaagacacaggtggccctcggatcctgggcctcacggcctccatccttaacgggaagtgtgatccttcagaactggagcagaaaatccagaacctggagagaatcctgaagagtaaagctgaaacagccactgacctggtggtcctggataggtacgcttcccagccgagggaggtggttctggactgtggaccctacctggacaaaagcggcctctcgagccgtttacgggcagaactggacgaagctcttctcttcctcggtgactgtaacacggccggttcccgagacgaccgggacccgacgtttatctccaaacagatcttgagcgactgccaggctgtgctgcaggttctgggtccctggtgtgctgacaaggccgcgggcatcatggtgcgtgagctgcagaagtacatcaaacatgagcaggaggagctgaaccgcaagtttctgctgttcaccgacaccatcctgcggaaagtccacgctctgtgtgaggagcgcttctcccctgcttccctggacctgaagtttgtcacacccaaggtcctgagactgctggagatcctgcacgaatacaaacctttggagcggcagcagttcgagagcgttgagtggtacaacaaccggaaccaggacaactacgtgtcctggagcgattcagaagatgacgatgaagacgaggaggtggaggccaacgagaggcctgagactaacttcccctcccccttcaccaacattctgtgtgggatcatctttgtggagaggcgctacacggcggtggtcctgaaccgattgatcaaagaggcggggaagcaggacccggagctggcctacatcaacagtaacttcatcaccggccacagcatcgggaagaaccagccgaggaacaaacagatggaggtggagttcaggaaacaggaggaggtcctgagaaagttccgagctcatgaaaccaaccttctgatcgccaccagcatcgtggaggaaggcgtggacatcccaaagtgcaacctggttgtgcgattcgaccttcccgcagactaccggtcctatgtccagtccaaaggccgagcccgtgcccctgtctccaactacatcatgctggctgactctgagaggaccaagagctttgaggaggatctgaccacctacaaggccatcgagaagatcttgaggaacaagtgtttcaagtcagtggaggtgggcgagttggaagcagatcaggccttggatgatgatgacgtccttcctccatacgtcctgcagtcagaggacggaggtccacaggtcaccatcaacacggccatcggacacatcaacaggtactgtgctcgactgccgagcgacccattcactcacctggcgcccaaatgtaaaaccgtggaaaccaaggaccgaagcttccagtccactctctacttacccatcaactctcctctgagagttcctgttaagggtcccatcatggtctgctcccgcctggcagagaaagctgtggcgcttgtctgctgtgagaagcttcataaaataggtgagctggatgatcacctgatgcctgtaggaaaggaaaccgtaaagtatgaagaggagctggacctgcacgatgaggaggagacgagcgtcccgggtcggcctgggtccactaagagacgacagtgctaccctaaagccataccggagtgtctgcgggacagttacaccatcctggagcagacctacttcctgtacgtggttgggatggtcctcaccactcctctccctgatgaactcaattttcgcagaaggaagctgtacccgcctgaggacaccacccgctgcttcggcatcctgacggccaaacccatacctcgtatccctcacttcccagtgtacacccgttcaggtgaggtgaccatctccatcgagttacagaaaagtggcttcatgctcagcgctgcccagctggacctcatcacacgcatgcatcagtacatcttctcacacatcctccgcttggagaaacctgccctggagttcaagcccacgcaggctgactcggcgtactgcgttctacctttgaacgttgttggagactcccacactctggatatggactttaagttcatggaagacatagagcagtctgaggcccgcacaggcattcccaccactaagtacaccaagcagaatcctttcatcttcaagctggaggactaccaggatgctgtcatcattccaagagtatgagacgttcgctgagtactacaaaacaaagtataacctggacctgtccaacctgaaccagcctcttctggacgtggaccacacgtcctccagactgaacctgctgaccccccgacacctgaaccagaaggggaaagctctgcctttgagcagcgcggagaagaggaaggctaagtgggagagcctgcagaacaaacag
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]