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2026-11-11 15:33:40, GGRNA.v2 : RefSeq release 233 (Jan, 2026)

LOCUS       XR_011190177            6699 bp    RNA     linear   VRT 18-OCT-2024
DEFINITION  PREDICTED: Lepisosteus oculatus dicer 1, ribonuclease type III
            (dicer1), transcript variant X3, misc_RNA.
ACCESSION   XR_011190177
VERSION     XR_011190177.1
DBLINK      BioProject: PRJNA1158843
KEYWORDS    RefSeq.
SOURCE      Lepisosteus oculatus (spotted gar)
  ORGANISM  Lepisosteus oculatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Holostei; Semionotiformes;
            Lepisosteidae; Lepisosteus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_090703) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_040954835.1-RS_2024_09
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 09/13/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6699
                     /organism="Lepisosteus oculatus"
                     /mol_type="transcribed RNA"
                     /isolate="fLepOcu1"
                     /db_xref="taxon:7918"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="blood, gills"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Vacherie, Louisiana"
                     /lat_lon="29.929889 N 90.747444 W"
                     /collection_date="2023-04-11"
                     /collected_by="Ingo Braasch, Allyse Ferrara"
     gene            1..6699
                     /gene="dicer1"
                     /note="dicer 1, ribonuclease type III; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 Proteins"
                     /db_xref="GeneID:102684602"
     misc_RNA        1..6699
                     /gene="dicer1"
                     /product="dicer 1, ribonuclease type III, transcript
                     variant X3"
                     /db_xref="GeneID:102684602"
ORIGIN      
tcgcccctcggcagcccaatcggggcgtgtcgccagacggtttctggaaaaaaatgacgggggcaacgttctgcagggaatttaacacgcacagatgagcgaaggggacgcagtgtacaaggcgcgctctgattgggcagtatgccatgtataacctttgcccccggtaaaatcaccaatcgaatgtctcgtttcatgtgtttcttcctcggcgacaaagctagatttcgtattcgtaacttcttgtgcgcaatgtccgggtggcactgatgcgctgtggaaatgggggcagttaacgtaatgtgcgtagtggttgtcagtgcagtctcgggcccaggtgaatgggagtatcgtggattaatctgacagcggcaggagggaatggcgaaaagagtaaacacacaacagacgtttttctgcaaggcgctgaactaagggcgtttcattagtgcaagaaaagtgtaccaacttctcaggctggaccagtgtggaacaagagattaaaaggaggctaatataatattgaagattaatatgagctgacttgaagcagctgaacatgaagccaaaaattctcactaactggtcgcatattgaagtctctaaaacagaaacttaagcttcatgaggacagaacggaatgagataaacactggagagtagaagcccttgctttgcaattcctaagcatggcgggactacagctggtgacccctgcttcatcgccaatgggtcccttcttcggactcccatggcaacaagaagcaatccatgataacatttatacaccaaggaaatatcaggttgaacttcttgaagcagctcttgaacacaatactatcgtctgcttaaatactggctcagggaagacatttattgcagtacttctaacaaaggaactctcccatcaaatccggggtgacttcagaaaatgtgggaagagaacaattttcttagttaatgcagcctcatatgtgactcagcaagcagccacagttcgaacacattcagatcttcacgttggagagtacagcagtctcgaagacactttgccatggacagaagagaagtggaatcaagaaatgactgaaaaccaggtgcttgttatgacttgccacgtctttctgcatgttttgagaaatggattcttgccactatctaaaatcaacctgctggtgtttgatgagtgtcatcttgcaattatggaccatccctatcgggagatcatgaggatgtgtgagaactgcccatcatgtcctcgaatcctgggtctcactgcctccatcttaaatggcaagtgtgatccatctgaactggaggagaagattcagaatctggaaaggatcttgaaaagcagtgcagaaactgctacggacctggttgtcttagacagatactcgtctcaacctcgtgaagttgtattggattgtggaccatatgtggacaaaagtgggctgtgtgagaaactcttgaatgaattggatgaagcacttaattttcttaatgactgcaacatatctgtgcatcgtgaagacagagatccaaccttcatttcaaaacaggtgttgagtgactgtcgagcagtgctgacggttttggggccgtggtgtgcagataaagcagctgggatcatggtgcgggagctccagaaatacattaagcacgagcaagaggacttgaaccggaaattcttattgtttacagacactattttgcggaaaatccatgcactctgcgaagagcatttctcacctgcctcacttgacctgaagtttgtgaccccaaaagtaattaagctgcttgaaatcttgcatgagtacaagcccttcgagcggcagcagtttgaaagcgtcgagtggtacaacaacaggaaccaggataactatgtttcctggagcgattctgaagatgaggatgaggatgatgagattgaagataaagagaaacctgaggccaattttccttcccctttcaccaacattctctgtgggatcatttttgtagaaaggcgctacactgcggttgtcttaaacaggctcataaaggaagctggcaagcaggatccagagcttgcctacatcagcagcaatttcataactgggcacagcattggcaagaaccaacctcgaaataaacagatggaggtggagttcagaaagcaagaagaggttcttcggaaatttcgcgctcatgagaccaacttgcttattgcaaccagtattgtggaggagggtgttgatattccgaagtgcaatttggtggttcgctttgacttaccaacagagtaccgctcctatgtgcagtctaaaggcagagcgagggctcctgtctccaactacataatgttggcagacaccgagaaaacagaaacatttgaagaggatctcaaaacctacaaagctatagaaaagattctgaggaataagtgctcaaagtcagcagattgcagtgagtttgaaatggaacctgtcctggatgatgataacattttacccccttatgtgctgagatctgaagatggaggcccaagagttactattaacacagccattggtcacatcaacaggtactgtgccaggttacctagtgatccattcactcacctggcaccaaagtgtaaaacagtggagctacaggatgggatttatcagtctactctttaccttcccatcaactctcctctcagagttccagttgctgggcccaaaatgaattgtgcaagactagctgagaaagcagttgcccttgtctgctgtgaaaaattacacaaaataggtgagctggatgaccatctgatgccggtggggaaggagactgtgaagtacgaggaagagctggatttacacgatgaggaggagacaagtgttccagggaggccaggatccaccaagaggaggcagtgttatccgaaagctattccagagtgtctgagagccagttacccagttcctgagcagccctgctacctgtatgtgatagggatggttctcaccactcctcttcctgatgagctcaacttccgtaggaggaagctctatcctccagaagacaccaccaggtgtttcggaatattaacagccaaaccaatacctcggatccctcacttcccagtctacactcgttcaggagaagtcaccatatccattgagctgcagaagtctggcttcaccctcagtgcccagcagctgcagctcattaccaggctccaccagtacattttctcccacattcttcgtcttgagaaacctgcactagagtttaaacctacagaagctgattcagcctattgtgttctacctcttaatgttgttgatgactctaacactttggacttggacttcaagttcatggaagatattgagaactctgaagcacgtattggcattcctagcacacagtacacaaagcagaaccctttcactttcagactggaggactaccaagacgcagttatcattccaaggtatcgcaattttgaccagcctcatcgtttctatgtagcagatgtctacactgatcttacacccttgagtaaatttccatctccggagtatgaaacttttgccgagtactacaaaaccaagtacaaccttgatctgtccaacttaaaccagcctcttctggatgtagatcatacatcctcaagattgaaccttttaaccccacgacaccttaatcaaaaaggtaaagcccttcctttgagcagtgctgagaagagaaaagcaaaatgggaaagcctgcaaaataaacagattttagttcctgagctttgcgccattcaccccattccagcttccttgtggagaaaagcagtctgtctgcccagcatcctctatcgtctacactgccttctaactgcagaggagctccgagcccagacagccagtgatgcaggtgttggggtcaaagctctgcctccagagtttaggtaccctaacttggattttggatggaagaaatctatagacagcaaggctttcatctcaagtcccagctcttgcatagaagaaagtgaaaattactgtaagcacagcagaactgtagcccctgaaaatgctgcacatcaaggtgctaaactagaagactcctcaccaccgagggggactcagccatctgtgaactgcaccacacctgttgagaagtcacctgataagctacatgcacccaacccctcacaaaggagcagagctagcaggaactgtctttgtgctgagaacctcatgaatggcactgctaatgaccttagtggaggcagcaattgccaatgtcatccactgaactcctgcaagagtgacatacctttgcaatcaactacctcagttcccatgccgaactcacagagcattgagaaccagcccatgcccagcgttgaatgtactccagggagtaataaatttgatggacatgctataaaatctacctcagacggttgcctggcagtggcagtgactgcaacagccagttcctcagcagcacctttatcagatgcttcacacgtttcaaaacttgctaccagccctgtctgcagcgactcccccaaaacccttggcccaaaccctggtctcattttacaggccttgaccctttcgaacgccagcgatgggttcaatctggagcggctggagatgctaggagactccttccttaagcatgcaattaccacctacttgttttgtacctatcctgacgctcatgaaggccgtctttcctacatgagaagcaaaaaggttagtaattgcaatctgtaccgccttgggaagaagaagggcctccctagtcgaatggtggtttcaatttttgatccacctgtgaactggcttcctcctggatatgtggtgaatcaagacaaaagcagtacagacaagtgggattcagaagagaacaaagagaatccattagccaatggaagatctgaggaagactatgatgatgatgaggagggtgttgacgatgttgatgaagatgatgatgacctgatgtggaaggagccaaaagatgaggtcaatgttgaggatgatctggaatattaccaggagcacataaaattcattgataacatgctgattggttccggagcctttggaaagaagatatctcttgcatcttttccacctgcagagcccaactatgaatggaaagcacccaaaaagacttctctggcaaacgtgcagttctcttccgatatagatgagtttgattacagctcatgggatgccatgtgctacctcgaccccagcaaggccggagatgaggatgactttgtggtgggattttggaatccatctgaagagaactgtggggtggacaccggcaagcaatccatctcctacgacctgcacactgagcagtgcatcgcggacaagagcatcgctgactgtgtggaggccctgctgggctgctatctcaccagctgtggtgagagagctgcccagctgttcctgtgctccctaggtttaaaagtactgcctgtggagaagaaggcttgcagagacatcagcaacaccagccttcaggctgagcttggcaaggatcacactaaagacgtggagtatggttggctgaaaatcccacccagatgcatgtttgaccatccagatgctgaacgaaccctcaaccacctgatttcaggttttgaaaactttgaagagaagatcaactacacctttcacaacaaggcctaccttctacaagccttcactcatgcttcttaccactacaacaccatcacagattgttaccagcggctggagttccttggggatgcaattttggactacctcattacaaagcacctttatgaagatccgcggcagcactctcctggagtgctgactgacctgcgatccgcccttgtcaacaacaccatcttcgcttccctggcggtcaagtacgactaccataagtacttcaaagccgtctcaccagagctgttccacgtgattgatgactttgtgcagtttcaacttgaaaaaaatgaaatgcaagggatggattctgagctcagacgatctgaagaagatgaggaaaaagaagaggacattgaagttccaaaagcaatgggtgatatctttgagtcacttgctggtgccatttacatggatagtgggatgtctttggagacagtttggcaagtgtactatccaatgatgaggcccctgatagaaaaattctcagcaaatgttcctcgttctcctgtgcgtgagttgttagaaatggagccggagactgccaaattcagccctgctgagaggacatatgatgggaaagtccgggtcactgtggaagtggttggaaagggaaaatttaaaggagttggccgaagctacaggatcgccaaatcagcagctgccaggagagccctgcggagtctcaaggcaaatcaacctcaggttcagaccagctgagcaggaacgttccccacttcctgaaacaacaaaatagaagcgagcaaaaggcgatgggttttattgagaggtagaaatataacttagtcgaaggtatcctcatgggccagaggagcaggacactcgaccccctttcagagaaaggggcagctgcccaggtggactcagggtggaggcgtgatgaatacaaagaaatgtgagaagagctgcagaatacaatgggctctactcgcactcaacgggaccccccgcctcaaacctccaagcagtaaatggatctagactcggatataac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]