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Previous release (v1)
2025-10-24 19:07:27, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_010056610 10693 bp RNA linear ROD 22-FEB-2024
DEFINITION PREDICTED: Rattus norvegicus uncharacterized LOC134481213
(LOC134481213), transcript variant X3, ncRNA.
ACCESSION XR_010056610
VERSION XR_010056610.1
DBLINK BioProject: PRJNA1074393
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_086030) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_036323735.1-RS_2024_02
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 02/09/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..10693
/organism="Rattus norvegicus"
/mol_type="transcribed RNA"
/strain="BN/NHsdMcwi"
/bio_material="RGD 61498"
/db_xref="taxon:10116"
/chromosome="12"
/sex="male"
/tissue_type="kidney, spleen, liver"
/geo_loc_name="USA: Wisconsin, Milwaukee"
/lat_lon="43.05 N 88.04 W"
/collected_by="Rebecca Schilling, Melinda Dwinell"
gene 1..10693
/gene="LOC134481213"
/note="uncharacterized LOC134481213; Derived by automated
computational analysis using gene prediction method:
Gnomon."
/db_xref="GeneID:134481213"
ncRNA 1..10693
/ncRNA_class="lncRNA"
/gene="LOC134481213"
/product="uncharacterized LOC134481213, transcript variant
X3"
/db_xref="GeneID:134481213"
ORIGIN
gtgactatgtaccatgtagaatctgggataaactgatgctaaggtagtttgttcagggctttatccatggaaacttgtggagtagctcgggagctgcagtagagaaatgtggagtttggagccagtcggtcttggattaaatctggccctttcagttgtcttatggatgacagaaacctgttccctccatagaggccacagctaaatatcgctgtgggccttaaaattatatgatctggcagaggacactgaagtcaagaaccctgaggtagggagggacagactgggtggcccacatccccaaaagaggccttcagagggtgtgggagctcagtgtagaacggctatgctgaaataggacttacaggcagtacttctgggagccaggtacagcagcctgttaaacatggcctcagaagtcatatgcatatacaacatacatacacatacatatacatatacatcatatacataaacatcatatatattatacacacatatatacatacacatacacatactacatacacataatatacaaaatatacatgcatatatacatatgcatatacacaaacatatacatcatatacattacacacatatacatatatgtacacatacacataccacatacacatacatatacaaaatatacatacatatatatacatataaacatgtatatacatcatatacagtatacatatgcatatacacatatatcatatgcatatacatatacacatacacatacatcatatgcatatgcatatacatatatatacacatgcatatacacatatacatacatcatatacattatacacatacagatacatcatatgcatatacatatacacatatacatgcattatatgcatatccatatgcatgtacatatacatatacatatactgggagatgttcgctccagtaaatgacaccccaagggcagaagaagagatcagagggggctggaagtacacctctgttggcccagtgcttgcccagcaccgaggaccagaagttcaaggtcattcctggctgcctgtgagttacaggtgagcctgggctacgtgaggaaagagggagacagaaagagggatggagagagggagaaggatggaaggaggacaggaagggggagagagagagaaaactgagaaagaaggagagggagacagagacagagagggagagaggcccagagggatatagagagagacagacacagagagacagagatgaagagaaacacagaaagggagagatagagaaagacaaagatggagacagacagacagagacagggggagaggaagagagagacgggggagaggtgggggaaggagagagagaaagagaaaaagagggagagaaagggggagagagggaggaagagacagagagaggcagagaaagagagaggagatgtaagagtaaagggagagacagaggggagggagggaaagaagagaaggagagagacagaggaagggggacggggagggagggatgacacggccagtctaaaccagtgtgtggcaagcagctagggttgcccttaaacccttttgtcagaattaactgcctttatccctcctagaggagatgcccccatgacctgtacacttctccagccccaccctcaccacactaaagaccaagggctcaccccatgggtaactggaacaccccatgccctctccacaccacagctgcgaagaatgggcttctggaactcctggaggagcccggccccttctccctagctcactccagaactctgccactgtctgctcgtgtgcgtgtgtgtgtgcgcgcgcgcgtgcgtgtgtgcgtgcatgtgtgcatgtgtatggaggccagaggttgactttgggtgtcttcctcagtggctctccacctttctttttgacacattattgctcagtgaaccgaagacatgaatggcttaggaaggcagcccagagggccccatgatccacttgtctccatgccaacctcagcacttgggttccgggtgtgtgccctacctccgacttttttttgcgggcgctgggggtaaaactcaggcccccacattgcacagcaagcattttacccacgtgtgacatcttcaccccctaagctgttggtggtttgttaccacagccacggggttcacaggacgtccccaatggaggtggcttgggctgggcgttccggtgttccattcatgaggtgggtggtcttgtcttccggggactgttggaacagatacatgactgtcattaaaccctcactaggtacggaggccccacctccttcattgcttggcttccaatagatacattattcctgtgtctcatgggagccaaggcccagtttgcctccctgcctttcctgggggctagctcccccatgcccaagggactcagtcaccagtgtctggacagagcccccaattctgtcatcaccccagatagacaaggcagctccccctggtgctctagaagcctattcttggccgctgtgacttggaggtgagtaggagtgcctgccagttgctcatgtggtgacttggtccctagtgttgaaaagaggtagaaccagagaggggtgtacgtccttggaggttgattcctaccctcagtttctccactggggctccagatgcaatcttagtacccttctggggtgctgctataggaccataggcaggggcactgacaaatgtcagtgggcaaacctttccttggtgcagtgagcttccatttcggcgatgcacaccgtaggataaactcaggggcacaccacatgtggccagcagccctgggctgcccctggttccctgctgcagatccacctgctgctcccttccactgacagtccagaggatctaaagggtttcaaacctgcccggacgcaggaacaggataacgctggtccccacatcagactagcataggatctgtgcacaggatctaataatcagtgttagctgtcggggatgagggtgctgcctgccttgtgagtgcttgctgcttttccgggatctatgatagtttctgggacacagcggatggtcagcacacgtttcttggtgatttggggtatgattcatgcttaggaacatggcaaaatctctttgtgtgtatgcaagattgcaagattatccaaatcgccccattcccccctaaatacacattatacgattgaagaaagagttaaaacaaagaggttggtgagatctggagctgctgacttcaggtgattttatttctggctcctcagttattggtctttcctaacacttattcaataaatagattgtgtttgaaataaataagaaaacgatgcagggtttatttgggagcccgtgacattgttatgtggggcagtgatcgtaagaccctgcaagtgcttatggtgcccgctcttctacacccagctctcagcagcctcaccaccacacatggcttgggttctgagggggccgcacacagccccccaaatctggctatggatgacattctgacagccacagccaagctgtaggaccaaggtgtcaacctggaatggtagcccacgagcaagtgaaacaggctcagctctttcagtgacagcctctccccctccatcccatgctgatggactacctccctgaccacagtctgccaaataccctccaacggcagaagtgggaacaaaggcccctgaagtctttgagggtcctccatggctcgtaggacacaaatgactgtacctgagaaaggttccgctgtatatggtattcactgcgtatatgcttagaagacatcctgggggtggtcttaaaccagatacacagagttagctgcttcttaaggcaattacagttataagacaagaagagggcatggagttgctgtgtgtgctggagacagaggacgctggatgtgccctggtcctatacagtgtaaaggtatttccgtcattcataggtaaagcctactaagatatggggaatctcaacagggctgccttcttccctctttctgtttcttccaccttggcacttgatgttcagagaaagctctcagactggtgtctgaacatgccgccatacccaggcccatttgaaggacacactgaagacaaggcccctggaagcctcctgcctcaccttgtccacatcttaaccatgtttctgggttgtatcaagaagccaggcatctgtggccaggacacctacatatgtgtgtctctggacttttagcagattctggaattcaaggaacttattcagctcctgacttaaatccatgtttgggacagtgcccccctctgctcagtgttttctagaaaccacttatttctgggaggtgggtgaccacttcccacacaggccccagatacctagatcctttcccttgtattgatgatcaattgatgattgattgataattgtctgctggcctcagactccaagttgtcctacttcggtgccaccgtgcctggctaccaatgtgttttctgtgtgctgtaggagcaatgcatgctgtgtccctggtggcttcttcatgccctattactacctgataccgtagaaaaccttgggtgacagtcaaaggcaacggactctgtaacattcacccaggccccaggtgaggctaggaggccatgccaatgtctgtagccccaggaaaccccttagcagaggggagtctcctgtcccctggaggaagaaaccatctctatcaatactggggaatgaactggggatgtcacccactgagctggtgctccccgggtgaggtatctccgcagcagtctccttttgctccatggcaacactgcactgagtgatccgaggacctcatagaagagtcaggatggaggcaggtggtgcttctcccttctgggacaagaaaaggtgcaaggtgggtggctttccttctgaatttcagtacctgtacctctcgattagtcatttcttgtgtgctaggcccagaacgccccatcaccagcgcctgacatattagagctgaaatgaatcttgttctcacgacagaggacatgctatatgttcccaagactctggttggggtgggaagacagggatacaggagctcagagaggcagagaccttgtagggaagtttgtcactgcacataaacactggtcattggtacagtgtcagctcacatggtccatgtcctcagaatcccctcaccagcccctgaagcaggaggcagatctaccctcccacaggctgccagaaggaaggagtgaatggctagacttacccatacactgtcagaggtctagatacatcctagagttctggagtaaggaggcatcagaggcagccccttcctccttctccaatctgcaggagagcccaactgactccctaaagaggagctccaatcagcctgtgcttctgactccattagcagatgaggttacggaatgaccagcttaaatgctcttggtcactcagtggccctggtgcagaacagggctctatgttttgtctccaagggtgccacagcctccagtcttgcacagcagtggctgtggtatgtctttgttacgttgtgcagcgtcagatgcataataactactcagtctcctagctccctatgcatgatgggtagggaaatgaatgcaaatgtcatgatacaatacaaagacacatccttagctcttgcttggctgtcttggagttggagggtgcagggcttctcaaagaatctctagggagtctgggaacctcagaaccaaagatcatttctataaattcaaagaaatggtgggtagttgacaagagcctacataggtacctgagtgtgtgcgtgtgtgtgtgtgtgtgtatgtgtgtgcgtgtgtgtgtgtgcatttatgtgtgtgtgtatatgtgtatgtgtgtgcatgtgtgtgtatgtgcatatatatgtgtgtgtatgtgtatatgtgtgtatgtgtatgtgtgtgcatatgtgtatgtagtgtgcatgtgtgtgtatatatgtgcatgtgtatgtgtatgtgtgcatgtgtctgtatcatatatttaaactgatagcataccatgtccttttcttattccccgatgaccagccccattagaacaaagaccttccctttgtcccttaccccagctcactgtgcaggtgtgatgggttcattctctgacctcccacagccagaaggacaggcagcctgtggcccaacagctgggagttgggagatccagagaagcagacagtgccagcccaaacctctggcccaaggtgggagaccaggaggggttggatgcctatttatctttgcttctttcatggactggaaggttctggcacgagctgggatgaggccatttacacataaggagatagatgccactgtgcctcagggagagaggggcctgggaactcaccagcctctgtagtggatgccctaccaaggatacctcataggatcccgggacagccagacaattaagacggttgatttcataactcaacggctagctattttttgcttataatgaattgcagttcaaaacaccgatagaaagttgcatattaaaatcataggctggttcctttaaagacacagggagcacaactcagggcaaatggagccacacatgggccacagggaggaaggacggcagctggagaagcgtgttctccctttgcgcaggctcaatgcgttggtggccttcaggcctcacctgccccaggagggggcatgtgtgccttcctcatccatcttcttacatttagtagatccctgctgtgtgtgctgggcctggcccctgggacacatcaatggaccagaaaaggccttgccctacggatctcctgatggagcagaggaacggggtcaggagatgactatggactgtgacacacgtctcacagactccaaggttgtgctggaggaaatcacagagaaggggctggaggagggaggtgggcagtgtggataacacaggcctcccaagaaggtgagttcacgctgggccctggggaagaaggaagagtagacagacagccaggacataacaaggccgcccctaggaagggccaaagaggaatgtgagagaggcatgagaagtgagggagctctgagctttgttctgggcacagggaggtggttttgtctaaattaggttttcagcaaaaattgatccgatccttaaaaagggccagagttggggacagacgctgcaggcaggtgaaggtgacagtggccttgcttgaggctgttgaaactgggagcggagcagtggtcagcttgagaagttaagcaaggggcactgaggcagggctgggaacacttatgaaatgcctgctgtatacccagctggggggcaagtaccagggaagagtggcctcatgatacagtttagaccttcaattctttcatgttagtacctgaaaggacaaaggttggcttctgtggatgtagattttagtggggatggggtgggagcaggaaacagggcaggagaccagatcaccctcctttgtggaataacatggaaggatgtgatcaagactgtgtgcctactatgtgcttgctgtagccagtagtcacacactgacctcctggttaccctgtttcagatggggaatggtcatcaggacaggagaggctggggcataacaggctgggagccagcagaaagggcatttgaatggagtctgtaaaactccgggctgggactgtgatggagaccctgcacctctagctatctttgcagatgaggattgtgctggtaaccaggcccacctggaggacttagagaataaaagtgacttgtgcagggttacatagtgtttctgggcccttctgatactgtagcagataattgtatcattgtatcttagtccagaactagctgggatggcgtaatttgtcagctcccatttactctgaggagtttccaagtcccctctctgggctatggcaggggacctggtgatccttggatctagttctgttctatctcccattgctgggaggggcggttttttttttccttgtattagtttctggctgggatccttaggggaaaaaacaccaacaagccacacaagtggatttatttaactcaccttaagtgacagcctgcagaaggaaatccaaaagacagggtacctgctcctgcattctaaggctcagtgatctaagaaccacccagaggactcatggctggtaccagacctggaattaattcactggggacttggcctgtctagcatgttttcttgtggcctcagggctgaaggtctgctgctgagagtgtgcttggtgcccgctcacccagggatagcctctttgcttcagagggtgagggaaagaggaaggtaagtaaccatagggtctcatctctgttattctggggtcacacatcctgaaccccatctctaagaggtggcatttggcagggaaactgcctctgacctgccacccgagacacatttgtttgggtccctagagtacccccaaggggtgacctggtgacccaaagccagacttccctcagacctgcttcagccaggacccttcctctcctctgccctcagttctttccctctggctctactaggctccccactttcttccaggtatgctgtatgtaagctggtcaggaacctgctgtagttgcagaaataacccaatctcttcttgggagtggtggggagaccaaaggggacaatcctaaccagtaagatgaatataatgcaaatccagacaggaaatggccagtgtctagggcaacagaatagcttagcaagcacactttactcattcagtctcctcttccagttaaaacatgttcagagaccagatatccccttgactcccctgagcccagcacctcatctaaggaatgtgaaaagatcccctacacctcttggaggtgtaaagataagatggggtgaaggcttgcgtggtggtactccccccagggtacggggtgttcctggggtggttgcagctgtgtggcctcagacaagttgctcacagtctctgagccttagttttctcatttgtaaagtgagaagccactgggggatcctggcctgtcatcgggtgtatctcctcaatgtcctggaacatggctgaaatgggaggtgggccttcactccagctattctcagcctcccagagttctccgtgagtgatgcttccagattctcccccagcggcctgcagagatccctccaggaaatcaaatcttgtagagatggagtcccagtttagcataaactcccgctccagcgggaacccagtctgccctggcccaacgcagatggcggcgcccatagccaaggtacctgggctcactgccacccaggaggcagaatcagtctttgctccgctgaggatgctgtggccatgacactggctgggcctcctgccttcggtttctgccgccacttgcccccaacgaccgccatgggcgcacagttaattagcaggtcctggaaagctcatcaataatagaaccggtggccgcggctgatggctggcacacggtggacagtgaggccccggtggcagcggctgatggccggcacacggtggacagcaaggccccgtaaatcagtttgacgggcactgaccaagaaagagcttcccacagtcctcaggctgggaagcgctgaggcaggctgatggtgcctgttccacctctgcccctcactgctccagccacaccggtcctccgatatctcttcctcctgccatctggctcttgtctttttccttcatctcaggtcccagaaaagcatagcccttccccagtcgccaccccacactctgggatcttatagaaggggtttgctggccggtttttgaaataaactagagacaactgagagaagggaaatctcagttgaaaaaaaaatgcctccatcagattggcttgtggatgcacctgtggtatatttttcattattctctgagtatttacttactgttattattgtgtgtggtatgtatatgctgctgaacttatgtgcagagttcagaatatggagttgggtcccctcttccacttttaagcgctaggctaggtttgccaaagcgatgcaaaccgagacataacctgggttcagagaatctcgaataaggagttgcccccatcagattggcccatgggcaactctatggggagataatatttgattgatgactgcatctggaagatctgctccactgtgggtggggccacccctgggcaggtggtcctggatgatagacaaagcagggtaaacaagccagggggagcaagccagtgagcagcatccctccacggcccctcatcagctcctgtctccaggttcctgccttgggttcctactctggctttccttagtgatgggctgtggcatgggagtgtaaaatgaattaaacccatctgtccctaaattgctcttggctgtggtgtttatcataacagaaagcaaaacaggaccgaagtcatatctgtggtcttcatgtgccctcccatggcaagaacacacactcacacaaccagtgctgcccatgacaatcttcctcctcctcctcctcctcctcttcttcttcctcttcttcttcttccttcttcttcttcctcttcttcttcctcttcttcttcttcctcttcttcttcttcctcttcttcatcctcctccccctcttcttcctcctcttcccc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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