2024-09-08 11:20:06, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XR_009864796 3852 bp RNA linear MAM 10-JAN-2024 DEFINITION PREDICTED: Lepus europaeus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X6, misc_RNA. ACCESSION XR_009864796 VERSION XR_009864796.1 DBLINK BioProject: PRJNA1061222 KEYWORDS RefSeq. SOURCE Lepus europaeus (European hare) ORGANISM Lepus europaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Lepus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_084848) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_033115175.1-RS_2024_01 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 01/05/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3852 /organism="Lepus europaeus" /mol_type="transcribed RNA" /isolate="LE1" /db_xref="taxon:9983" /chromosome="22" /sex="male" /cell_line="ZFMK-TIS-69753" /tissue_type="Fibroblast" /dev_stage="adult" /geo_loc_name="Finland: Ilomantsi" /collection_date="2018-10-25" /collected_by="Jaakko Pohjoismaki" gene 1..3852 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:133751238" misc_RNA 1..3852 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X6" /db_xref="GeneID:133751238" ORIGIN
gacggcggaggcttcaaaccggcgcttggctgccgccgccatttctgtagaggggaagggcggagaaagctgcgttgatggcgctgttcccggcctttgcgggcgtgagtgaggcccccgatggtgggagctcccggaaagaattagactggctgagcaaccctagcttttgtgttggaagcctgccgtcgctgagccaccaaactgaggagcccacggccctggtttctgaaggggcaccactgccaaggagttctttgaaatcagaacctgcagatgaaagtgacaccgaccagaagctcatccaaacgagcagaaaaaagaagaaagagaggaagaagaagaggaagcatcagcatcacaggaagacaaagagaaggcgcaggcagtctggcagcagtgagtctgagccgaacactgattctgccgaggacgggccctccaggggcagcaggagggcctccgagaaaccaggtccaggaagtaactctgctgcggagactggacgtcgccttgtttggcttgaggatgtccaggctgtgagtggagaaaccttcagaacagataagaagcctgatcctgccaactgggagtataagtctctctaccgcggcgatatagcaagatacaggaggaaaggagattcctgccttggcataaaccccaagaaacagtgtatttcttgggaaggggcttccacaggaaagaagcggacccgtaagcatgtcgaacgctattttacaaagaagagtgtgggactgatgaacatcgatagcgtcgccattaccagtgaaactgcatctccctcggcggagccaggcccctttatcccagtgaaggactcggatgatgtgactgctcctgttgcagcctggctgaatcctttaggggtttatgatcagtcaaccacacagtggttacaaggacagggtccttccgagcaagagtcaaagcagcctgactcacaggcagacagagagagtgctgctctcaaggccaaggtcgaggagtttaacaggaaagttcgggagaatccttgtgatactcagctgtggatggcattcgttgctttccaggatgaggtcatgcggtgtcctggtctgtacgccatcgaggacggcgagcgggagacgcggaagaagtccctgaggctgctcctggagaagaagctggccgtcctggagcgggccgtcgagagcaacccgagcagcgtggagctgaagctcgccaagctgcagctgtgtgccgagttctgggagccctccgctctgctcaaagagtggcagaaactgatttttttacaccctaataatacagccctttggcagaaataccttttattttgccagagccagtttagcaccttctcagtatcaaagattcacaacctgtatggaaagtgcttgagtactttgtcggctgtgaaggacggcagcgtcttgtctcaccccgcgctgcctggcacggaagaggcgatgtttgcgctctttcttcagcagtgccactttctgcggcaggctggccactcggagaaggccgtcgctttgttccaggccatgattgacttcactttcttcaaacccgacagcgtgagagatctgccgaccaaagtgcaggtggaattctttgagcccttctgggatagtggagagccccgggctggggagaagggagcccggggctggagagcgtggatgcaccagcaggagcgcggtggctgggtggtcatcaacccagatgaggaggaggatgagccggaagaggacgaccaggagataaaggataagactctgcccaggtggcgaatctggcttgctgcggagcgttcccgagaccacaggcattggcggccctggcgccctgataagagcaagaagcagacagaggacgactgtgaggaccctgagagacaggtgctgtttgatgacgttggacagtctctcatcagactctgcagtcccgatcttcagttccgacttgtggaggcctttctgcaggtcctgggtgtgccttctggcttcacgcctcccgcctcctgcctttacctggctctggacgagaacagcatctttgagaacgggctttatgatgaaaagcccttgacgtccttcagccctttgttttctggtgtcagcagcgttggccggatggacccgctgggctgtcggcggtggaccaggggtcacggtcgagagggcgaggacttcatccgcaacatcttccacctcgtgatgcctttgttttcaggcaaggaaaagtctcagctctgcttctcctggctgcagtacgagattgccaaggtcatttggtgtcttcacactaaaaataagaagagattaaaatcacaggggaaaaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttttgcctctggaagcagtatgcgcatctggagtggttgcttggcaacaccgaggactccaggaaagttttcgatacggcgctcagcttggtgggaagcagagacctgaaggaccatgaactctgtgagcttagcctgctctatgcccaactggaggtggagacggagctgtcaccagactccacggggtccgccacggcccgagctgtccacgtattaacccgactgaccgagagcagtccctacgcgccctacacggggcaggtgttggctgtgcacattctgaaggcccggaaggcttatgagcacgcgctgcaggacagcctgagtgagagctgtggccccactccagcgcctgtcccttctgtcagttgcctgatcagcttggtcaggtgctttatgctcttccagtatttgactgtagggattgacgctgccgtgcgggtatacgagcaggtgtttgccaaactgaaagagtgtgttttcccggaaggctctggcctggaggacagagcgggctccccgagtctgagcggagccctggaagcggtcaccctgatgcacacgagtctgctgcagttccacatgcgagtcagcgtttaccctctggctcctctgcgagaggcactctcagaggctttacagctgtatcctggcaaccaggttctttggaggtcatatgtgcaggtgcaaaataagtcccacagtgccagcaagactagaaggttcttcgctgcaatcaccaggtctgccaaacccttggagccttggctgtttgcaattgaagctgagaagacgaggcgaaggctggtagagacggtccagagggtaggtggtggagaggtccactccacgatccccgagactggcctgacgcaccggatcacggccctgttcgagaatgcgctgcggcgtgatgatggcagccagtgccccctactgtggaggatgtatttgaactttttgtgttggcacctctgggacaaggatggctgtgcctgggggaggagctgccaccaccttctgtgccgtgtcccaggtaagaggaggcagctgtgtgggttgcagtcccactcgctagctgctacttgtaccacacatatactcattgctttgctcttagacactgaagatggaggtgctcactgcagggggagacgagcgtatgctcccaggcagttctgctgagatggccgattgtttcccaggtgcttcacccctgcgtgcccagcacttggccttggtgcatctgtaggaatggtcatgtcagcattggggcggggcgagtgcagcctgtgaccttgctgcctcccccatcctggcgctggctttggttgttttcgtagaaccgacacggggaggcgatctctgtggacagaggcaaaggacaccctgatgtgccagatgacaggaagtcggcagggatacagtgccgccaccaggc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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