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Previous release (v1)
2025-10-28 21:20:47, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_009606525 6885 bp RNA linear MAM 01-NOV-2023
DEFINITION PREDICTED: Panthera onca NRDE-2, necessary for RNA interference,
domain containing (NRDE2), transcript variant X2, misc_RNA.
ACCESSION XR_009606525
VERSION XR_009606525.1
DBLINK BioProject: PRJNA1028623
KEYWORDS RefSeq.
SOURCE Panthera onca (jaguar)
ORGANISM Panthera onca
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
Pantherinae; Panthera.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_083312) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_028533385.1-RS_2023_10
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 10/19/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6885
/organism="Panthera onca"
/mol_type="transcribed RNA"
/isolate="Sample0147"
/db_xref="taxon:9690"
/chromosome="18"
/sex="female"
/tissue_type="blood: Jugular"
/collection_date="2015-07-29"
/collected_by="Julia Jones, Liz McCrae"
gene 1..6885
/gene="NRDE2"
/note="NRDE-2, necessary for RNA interference, domain
containing; Derived by automated computational analysis
using gene prediction method: Gnomon. Supporting evidence
includes similarity to: 3 Proteins"
/db_xref="GeneID:132670204"
misc_RNA 1..6885
/gene="NRDE2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X2"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
/db_xref="GeneID:132670204"
ORIGIN
ccaggtccccgggtcaagccccagggattgcgagtgggaaaaaccacacttcccagagtgcaccgcaaccgcgaaggcctcactaccggcgtccgctcgccggcgccatttctggagaggggaacggcggtgcggcctgcagtcatggcgctgttcccggcctttgcaggcattggtgagacttccggtagcggcagcgccaggaaagaattagactggctgagcaacccaagcttttgtgctggagccataacctctctgagccaacaaactgaaggggccacagccctggtttctgaagggtcacctctgacaaggagccctctgaaatcagagccttcggatgaaagtgacactaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcaccacaagaaaactaggagaaaacacggccagtccagtagcagtgggtctgagccagatagtgattctgaaaaggataaaacttccagaagcattagagacagtaaaaaggaatccgagaaaccaaaccgagaagggaacgccgtcgctgatactgggcaccgctgcatctggcttgaggacgttcaggctctcacaggggaaaccttcagaacagataagaaaccggatcctgcaaactgggagtacaagtctctctaccgaggagatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggctgccacagaaaagaagcactcacacaagcatgtcgagcgctatttcacgaagaagagcgtgggactgatgaacattgacggagtcgccgttggcggtaaaaccgaacctccctcatctgagccggtctcatttatcccagtgaaggcctcggatgatgtggctcctcctgttacgacctggttgaaccctctggggatttacgatcagcccaccacgcagtggttacaaggacagggtccttcagagcaagaatcaaagcagccagactcacagacagacagagagcatgccctgctcaaggccaaggtggaggagtttaacaggagagttcgggagaatccccgggatattcagctgtggatggcatttgttgcttttcaggacgaggtcatgaagagccctggcctgtatgccatcgaggaaggagagcaggaaaagcggaagcggtctctgaggctcgttctggagaagaagctggccatcctggagcgggccatcgaaagcaaccagagcagcgtggacctgaaactcgccaagctgaagctctgctccgagttctgggagccctccgccctggccaaagagtggcagaaactgatctttctgcatcccaacgatacagccctgtggcagaaataccttttattctgccagagccagtttagcacctttacggtgtcaaaaattcacggtctgtacggcaagtgcttgagcaccttgtctgccgtgaaggacggcagcatcttatcgcaccccgccctgccgggcaccgaggacgccatgtttggtctctttcttcagcaatgccacttcctgcggcaggctggtcactctgagaaggcggtctctctgttccaggccatggtcgacttcaccttcttcaaacccgacagtgtgaaagacctgcccaccaaaggacaggtggaattctttgagcccttctgggacagtggggagccccgggttggcgagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcagtccagatgatgatgatgatgagccagaagatgaggaccaggaaataagagagaagagcctgcccaggtggcagatctggcttgccaccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatccagagagacaggtgctgtttgatgacattgcccagtctatgatccgtctttccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccctccagcctcctgcctctacctggccatggatgagaacagcatcttcgatgacgggctttgtgacgaaatgccactgacttttctcaacctttcctcttccggtgtcagctgtgttggctgctcagacccactgggccgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctttgttttcaggccgggagaggtctcagctctgcttctcttggttacggtacgagatcgagaaggtcatttggtgtctgcacactaaaaacaagaagaggctaaagtcacagggaaagaactgcaagaaactagccaaaaatctcctgaaggagccagaaaaccgcaacagtttctgcctctggaagcagtacgcacatctggagtggctgcttggcaacaccgaggacgccaggaaggtgttcgatacggcgctcagcatggcggggggcagagacctgagggaccgtgagctgtgtgagctcggcctcctctacgccgggctggaggcggagctgttgccggacccgagaggggccgccacggcgcgagccgttcacgtactgaccaggctgacggagcaggggccctgcgggccctactccgggcaggcgctggccgttcacatcttgaaagctcggaaggcgtacgaacacgcgctgcaggactgtttgggcgacagctgtgtgtccgctccggctcccagcgactccttcgaccgcctgactagcctggtgaaatgcttcatgctctttcagtacttgaccgtagggatcgatgcggccgtgcgggtgtacgagcaggtgctcgcaaaactgaagggctctattcccccagggggctccggcccggaggacggagcccgcgcccagggcccccacggcgcgctggaggccgtgacgctgatgcacacgagcctgctcaggttccacacgaaagtcagcctttaccccctggctcctctgcgccaggctctctccgaggcgttaaggttgtacccaggcaaccaggtgctttggcgggcgtacgtgcagattcagagcaggtcccacgcagccagtgagaccagaagatttttcgacgcggtcaccaggtctaccaaactcttggagccttggttgtttgcgatcgaggccgagaaaatgaggaagagactggtggagagtgttcagagggtagatggtagagaggtccacgccacaattcccgagaccggcttgacacatcgcatcagagccctgtttgaaaatgcgttgcggagcgacaacggcagccagtgccccttactgtggaggatgtacctgaattttttggtttccttaggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccctgggcgaaggtgctgtacctggacgccgtggagcacttccccgaagagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccgtcgaggagctggcgcttctgctggaggactaggccaggagggaatgggccctgccttccgggcctctcgcctgccccccccaacccccccaccggagccgggatgcacaggacggggacgcatgcgtgtgagcatgtgtcacgagacctccgcttttcaagtttcttaattcttagtaatttgggtctgggttatcagtcttttacctcttgcacattgtttggatgtgtgaaggacacagaaccatagtttacatattgtatatgtgaatgtgtgtacgtagggaagaatcctgccaagtgaaaactaaacccgtcgtggctggcgtgcgggaggtctgttccactcctctgcccggccatgaacgttccccatccgcatccttggtggtcctgccgtcgtggtaggaaaggtctggtttctgagcactcggacctctccccgcagctggtgagcaggagagcagcttttgcccttaagagccgtttaaaacttggtgttctggctcgctcctgttttaaaagtttctcattatttgctaggctcttgatgccacctcccttctgtggaccaggagcatcacctgggggcttgttagagatgcagcctccgggcccacctcagcccttctgagtcagggcctgcacttgaacaggaccccctggggacttaggtgcaccaagtgtgggggcgctgcccaaaggacccctgcctgggggctgtgacacagaggcccagacccagacctgccaggccacattcttgttttgatttctgagggtatgaatggaatgaaacgtaaatatccacattcagaccactttcttctgaaaaggacacgcccttgcagtcattattaaggacactgagctaggaggaaattgctctatcttccctgaggtcctgctctaagagaaacgcggacagttgctgactctatcgtgatctctagaatggctgaagttgtatttctttggcatctcatccagagaagcccgtgtcgtggaagagaatcttgcctagaaaccagcggacactggtgggggagaagggcggcaggtcagggcacccgagaaaggtggctggccagccaagtggacgcttgcctcgatctgccccgcttccttcacggcttcaagactgaactgttcagagaggggagaagtgccggaaatggatgaagaaagggagccacgttctgggccacagctcccgttacaccaggaaacttcgcggcaacagagcacacgtccagttcatctacctacactgaggagagagcatgcgttctggctaaatggaaatctccccatttactgcatttattgtctcgcaacacttgccaaaagtaaaacaacccatgcaacatgatgtgataaaaccacaatctcagcactaagtttctatctggttatgaccctcaggatatttcaaatggtgcagcaaaaaagaaagtgaacaaaaagataaagcaaagaggtaaaacggtaacacttggtgaactgaggtgatgggtatgtgggcatttactattgttgcaacttttctgaagacttcaaatttccccaaatacaaagttggtgcaaaatttaaaaactctctttgaattgaagttaccgacaaagacactaacctagttctacagatgccaacgatacgcagttcagtgcaggcaccggcgtgaaaaggcccaacacacgccgtccctacctgaccgtggcacttacccctacctgacagaaacccaggtcctcacatacaaagcaggctggacccacactcagtgctgccgagcctcgccctaattctggtcgtctgggaagaaacgtcctcacacacacacaactaagaggtacagtccagcccaggttctcaccttgatgtcggccccagagaggtcatctttagccatgatcaagtcgtccagggtcacatcatcggccagcgtcatcctgctcgtgtggatctgaaagatgcgcctcttggtcttttcatcgggcagggggaactcaattttcctgtcaatgcggcctgcgggtatacaaggtttccagtcacacccctgtggctccccccaggctccgctgtggctcggggagcctgtctcctcacacctgcagtttcagagggaaacttcccttgtgggaagggtccaaatcttgaaaagtgaacactgctctttgtaaatatccacgtgtgaaatcgtcccgtttaaaagaaatcctctctcctctggtaccttcagaaacacacaaactagccactgctgcttttggtgctacccgaatgcgaaattaactggagctaccataggagctatttcttcagaaaaaagaatgttcattacgggaaagagaaacggtcacaacttaagactgcgatggaaagggccacactacacctactacatcacgttcttagccattacctcagtggaacgcagcttttgggaagttattctacacttcagtaatgtatttgccttgatgtgtatcatttttaaatcccctgaaagtgcacttaaacacgaacacatataaacacactcatcctccgtgatgggacaaaagcaaatctgacctggtctgataagtgctggatccaaagtttctattcggtttgtggccatgataactttcacgtcaccccttgaatcaaatccatccaactggttcaacagttccaacattgttcgctggatttctctttcaccaccagaatttgaatcgtatctttgaaaaagaagagaagggatgaaaaccgaactgatctcctgctgaaggggaattataaaaacacctctgatgccctcaattctagcaacaaaatcagcacagcctcccaaccaccacataatcttacttaaactgtagatgttttcgtgcctgagatggcatcattaattcagattgcacgttcggtatctgagcccccgacccaactatgagctcctggaaagccttgtgacaatggctgtgtccccagagtgcagatgatgcctggctcagagtggaaactcaaggcatggctgcacactaatctccagacggtcacgactcccgggtggttgtcacctggcaccccggagcagagcctaaagcatccacagccacgtacagtaggagccaaggcaaacccatgtgcaggccacacaggcagtgctccgtgatcattctcagacaagagctacaaggtctttacctctaaatgacacaaagagaaaaatgtacctttttgttccaatggcatcaatttcatcaataaacacgatggatggc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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