2024-09-18 09:32:39, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XR_009500979 4031 bp RNA linear MAM 01-OCT-2023 DEFINITION PREDICTED: Balaenoptera ricei NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_009500979 VERSION XR_009500979.1 DBLINK BioProject: PRJNA1021953 KEYWORDS RefSeq. SOURCE Balaenoptera ricei (Rice's whale) ORGANISM Balaenoptera ricei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_082640) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028023285.1-RS_2023_09 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 09/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4031 /organism="Balaenoptera ricei" /mol_type="transcribed RNA" /isolate="mBalRic1" /specimen_voucher="NIST 3 NM17K954C" /db_xref="taxon:2746895" /chromosome="2" /sex="female" /tissue_type="muscle and kidney" /dev_stage="calf" /geo_loc_name="USA: Gulf of Mexico, San Destin, Florida" /lat_lon="30.37 N 86.35 W" /collection_date="2006-02-11" /collected_by="Lydia Staggs" gene 1..4031 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:132359918" misc_RNA 1..4031 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:132359918" ORIGIN
aaaaggcggtgcggcctgtgatcatggcgctgttccccgcctttgcgagtgttagtgaggtgcccgagagtgggagccccaggaaagaattagactggctgagcaacccaagcttttgtgttggaacggtaacatctctgggccaacaaactgaagaggccacagcctttgtttctgaagagtcgctactgaccaggagtcctctgaattcagagccttcagatgaaagtgacactaacagaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcagcaccacaagaaaaccaagagaaaacgtgggcagtcaagtagcagtggatctgagtcatatactgattctgaaaaggacagatcttccacaagcatcagagacagtaaaaaggaatcagagaaaccgaatcaagaaaataatgccactgctgatattggacgtcactttgtttggcttgaggacattcaggctctgatgggagaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctttaccgaggagatgtagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcttgggaggggacttccacagaaaagaagcggtcacacaagcatgtcgagcgctactttacaaagaagagtgtgggattaatgaacattgacggagttgccattagcagtaaaactgagcctgcctcatcggagtcgatctcatttatcccagtgaagggtgcagaggacgtggttgcccctgttaccacctggttgaaccctctggggatttatgatgaagccaccacgcagtggttacaaggccggggtccttcagagcaagaatccaagcagccagattcacagcccaacagagagaacgtgcttctcaaggccaaggtggaggagtttaacaggagggtatgggagaatcctcgggatgttcagctgtggatggcatttgttgcttttcaggacgaggtcatgagaagtccgggcctgtacgccattgaggaaggagagcaggaaaagcggaagcggtccctgaggctggttctggagaagaagctggccattctggaacgggccgtggaaagcaacccgagcagcgtggacctgaagctcgccaagctgcagctctgcaccgagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttacatcccaacaacacagccctttggcagaaataccttttattttgccagagccagtttagcaccttttccatatcaaaaattcagagtctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttgtcccaccctgagctgcctggcaccgaggaggccatgtttgccctctttcttcaacagtgccactttctgcggcaggctggtcactccgagaaggccatctctctgttccaggccatggttgacttcaccttcttcaaacccgacagtgtgaaagacctgcctaccaaaggacaggtagaattctttgagcccttttgggacagtggagagcccagggctggggagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcgtcagcccagatgatgacgatgatgaaccggaagacgacgaccaggaaattaaagataagactctgcccaggtggcagatctggcttgctgctgagcggtcccgagaccacagacactggcggccgtggcgccctgagaagaccaagaagcaggcggaggaagactgtgaggacccagagagacaggtgttgtttgatgatattggacagtctctgatccgactttccagcccggatcttcagtttcagctggttgcagcctttctgcagttcttgggtgtgccttccggcttcagccctccggcctcctgcctctatctggccatggatgagaacagcatctttgacaatggactctatgatgaaaagcccttgacttttctcaacctttcattttccggcgtcagctgtgtcggacgcacggaccagctgggttgccggcactggaccaggggtcacagtcgagagggcgaggagttcatccgcagcctcttccacctcgtgatgcctttgttttcaggcaaggagaggtctcagctctgcttctcctggttacagtacgagattgcaaaggtcgtttggtgtctgcacactaaaaacaagaagaggttaaaatcacaaggaaagaactgcaaaaaactagccaagaatctccttaaggagccagacaaccgcaacaatttttgcctctggaagcagtacgcgcatctggagtggttgctcggcaacacagaggatgccagaaaagttttcgatacagcactcggcatagcagggagcagagaactgaaggaccatgagctgtgtgagctcggtctcctctacgccgagctggaggtggagctgttgccggacgtgaggggggccgccccagcccgagccattcacgtattgaccggactgaccgagaatggggcctacgggccctacaccgggcaagtctcggccgttcacattttgaaagctcggaaggcttatgaacacgcgctgcaggactgtttgggggagagctgtgtctccgattcctttagccgcctgattagcctggttaaatgctttatgctcttccagtatttgaccctagggatcgacgctgctgtgcggatatatgagcaggtacttgcaaaacaccaggtctctgtttccgcagagggccctggtctggagggcagtgccagcccgcagagcctgagcagcgtcctcgaggccgtcaccctgacacacacgagcctgctcaggttccacgtgaaagtcgccgtctacccgctggctcctctgcgagacgctctctcggaggctttaaagttgtatccgggcaaccaggttctttggaggtcatatgtacagattcagaataagtcccacagtgccagtaagaccagaagattcttcgatgcgatcaccaggtctgccaaacccttggagccgtggttgtttgcaattgaagctgagaaaatgaggaaaagactagtggaaactgtgcagagggtagacggtagagaggtccacgccaccattcccgagaccggcctgacgcatcggatcagagccctgtttgaaaatgcgatgcggagtgactacggcagccagtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcacttcagaattgtccttgggcaaaggtgctgtacctggatgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgacggagaaggagctccgcgtgcgcctgccgctggaggagctggagcttctgcttgaggactagcgaccaggaggggagtggggcctgcctccgaggcctcggcgcctgccccgtgggagccaggagacaccagaagagacgctgctgttgaacaactgccaccagctctgggggtgtgacggggcagcaggtattgaagtctgcagtccttttggtcagccagcttccctaacaaacacccggatccaccgacttgctgctgctgagcggccggtgtggagggcccagaaacaggattcagtgtttgagagagagcacgctttattgggaagagagcagtgcacgcgacccacatacgaagagggctggatgggcctcctacccatcgtgctcagaaggtactcggggtgctgtgctagtgaagagcaaccggaacgtggactcctgggcaacttccccaacctcacacctctgagggggtcgacacactgccaaccttttcctggaaggcaactgtggtccactagagatagagcccctcaggggtgccttcttgttttttataaagaacattttctttagactttt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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