2024-09-18 10:56:53, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XR_009334883 4042 bp RNA linear MAM 22-AUG-2023 DEFINITION PREDICTED: Kogia breviceps NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_009334883 VERSION XR_009334883.1 DBLINK BioProject: PRJNA1006431 KEYWORDS RefSeq. SOURCE Kogia breviceps (pygmy sperm whale) ORGANISM Kogia breviceps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Kogia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081312) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_026419965.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/18/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4042 /organism="Kogia breviceps" /mol_type="transcribed RNA" /isolate="mKogBre1" /db_xref="taxon:27615" /chromosome="3" /sex="female" /tissue_type="fibroblast cells from skin" /dev_stage="juvenile" /geo_loc_name="USA: La Jolla, CA" /lat_lon="32.866232 N 117.25444 W" /collection_date="2017-08-24" gene 1..4042 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:131753678" misc_RNA 1..4042 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:131753678" ORIGIN
aaaaggcggtgcggcctgtgatcatggcgctgttccccgcctttgcgggtgttagtgaggagcccgagagcgggggccccaggaaagaattagactggctgagcaacccaagcttttgtgttgaaaccataacatctctaagccaacaaactgaagaggccacagcctttgtttccgaagagtcgctactgaccaggagtcctctgaattcagagccttcagatgaaagtgacactaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaaacatcagcaccacaagaaaacaaagaggaaacgtgggcagtcaagtagcagtggatctgagtcatatactgattctgaaaaggacagatcttccagaaacatcagaggcagtaaaaaggaatcagagaaaccgaatcaagaaaataatgccactgctgatattggacgtcactttgtttggcttgaggacattcaggctctgacgggagaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctttaccgaggagatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcttgggaggggacttccacagaaaagaagcggtcacacaagcatgtcgagcgctactttacaaagaagagtgtgggattaatgaacattaacggagttgccattagcagtaaaactgaacctccctcatcggagtcgatctcatttatcccagtgaagggtgcagaggatgtggtttcccctgttacaagctggttgaaccctctggggatttatgatgaagccaccacgcagtggttacaaggccggggtccttcagagcaagaacccaagcagccagattcacagcccagcagagagaatgtgcttctcaaggccaaggtggaggagtttaacaggagggtttgggagaatcctcgagatattcagctgtggatggcatttgttgcttttcaggacgaggtcatgagaagtccgggcctgtacgccatcgaggaaggagagcaggaaaagcagaagcggtccctgaggctggttctggagaagaagctggccattctggaacgggccgtggaaagcaacccgagcagcgtggatctgaaactcgccaagctgcagctctgtgccgagttctgggagccctccactctgctcaaagagtggcagaagctgatattcttacatcccaacaatacagccctttggcagaaataccttttattttgccagagccagtttagcaccttttccatatcaaaaattcagagtctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttgtctcaccctgagctgcctggcactgaggaggccatgtttgccctctttcttcagcagtgccacttcctgcggcaggctggtcactccgagaaggccgtctctctgttccaggccctggttgacttcaccttcttcaaacccgacagtgtgaaagacctgcctaccaaaggacaggtcgaattctttgagcccttttgggacagtggagagcccagggccggggagaagggcgcccgaggctggagagcgtggatgcagcagcaggagcggggcggctgggtggtcgtcagcccagatgatgacgatgatgaaccagaagacgacgaccaggaaattaaagataagactctcccccggtggcaggtctggcttgctgctgagcggtcccgagaccacagacactggcggccgtggcgccctgagaagaccaagaagcaggcggaggaagactgtgaggacccagagaggcaggtgttgtttgatgatattggacagtctctgatccgactttccagcccggatcttcagtttcggctgattgcagcctttctgcagttcttgggtgtgccttccggcttcagccctccggcctcctgcctctatctggccatggatgagaacagcatctttgacaatggactttatgatgaaaagcccttgacttttctcaacctttcattttccggcgtcagctgtgtcggacgcacggaccagctgggttgccggcactggaccaggggccacagtcgagagggcgaggagttcatccgcagcatcttccacctcgtgatgcctttgttttcaggcaaggagaggtctcagctctgcttctcctggttacggtacgagattgcaaaggtcgtttggtgtctgcacactaaaaacaagaagagattaaaatcacaaggcaagaactgcaaaaaactagccaagaatctccttaaggagccagacaaccgcaacaacttctgcctctggaagcagtatgcacatctggagtggttgctcggcaacacagaggatgccaggagagtgttcgataccgcgctcggcatggcagggagcagagagctgaaggagcgcgagctgtgggagctcggcctcctctacgccgagctggaggtggagctgttgccgcacgtgacaggggccaccccagcccgagccattcacgtactgaccagactgaccgaggatggggcctacgggccctacaccgggcaagtcttggccgttcacattttgaaagctcggaaggcttatgaacacgcgctgcaggactgtctgggggagagctgtgtgtccgatccggctcccgccgattccttcagccgcctgattagcctggttaaatgctttatgctcttccagtatttgaccatagggatcgacgctgctgtgcgaatatatgagcaggtatttgcgaagcacaaggtgtctgtttccgcagagggccctggcctggagggcggtgccagcccccagagcctgagcggtgccctcgaggccgtcgccctgatgcacacgagcctcctcagattccacacgaaagtcgccgtctaccctctggcgcccctgcgagaggctctctcggaggctttgaagctgtatccgggcaaccaggttctttggaggtcgtacgtacagattcagaataagtcccacagtgccagtaagaccagaagattcttcgatgcgatcaccaggtctgccaaacccttggagccgtggttgtttgccattgaagctgagaaaatgaggaaaagactggtggaaactgtgcagagggtagatggtagagaggtctacgccaccattcccgagaccggcctgacgcatcggatcagagccctatttgaaaacgccatgcggagtgactacggcagccagtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcacttcagaattgtccttgggcaaaggtgctgtacctggatgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgacggagaaggagctccgggtgcgcctgccgctggaggagctggagcttctgcttgaggactagagaccaggaggggagtggggcgtgcctgcctccggggcccagcgcctgccccgtgggagccaggaggtaccagaagagacggggacacgtgcgtctgctgctgaacaactgccaccagctcgggggggtgtgacgggggagcaggtattgaagtctgcagtctttttggtcagccagcttcctcaacacccagatccaccgacttgctgctactgagcagctggtgtggagggcccagaagcaggattcagtgtgtgtttgagaaagagcacgttttattgggaagagagcactgcacgcgaccaacatacgaagagggctggatgggcatcctacacatcatgctcaggaggtactcggggtgctgtgctagtgaagatcaaccggaacgtgggctcctgggcaacttccccaacctcacacctctgagggggtcgacacacttccaaccttttcctggaaggcaactgtggtccactagagatagagcccctcaggggtgccttcttgttttttataaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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