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Previous release (v1)
2025-11-08 04:07:15, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_008659362 12892 bp RNA linear PRI 17-JUL-2024
DEFINITION PREDICTED: Symphalangus syndactylus NRDE-2, necessary for RNA
interference, domain containing (NRDE2), transcript variant X4,
misc_RNA.
ACCESSION XR_008659362
VERSION XR_008659362.2
DBLINK BioProject: PRJNA946760
KEYWORDS RefSeq.
SOURCE Symphalangus syndactylus (siamang)
ORGANISM Symphalangus syndactylus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hylobatidae; Symphalangus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_072430) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On Mar 6, 2024 this sequence version replaced XR_008659362.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_028878055.3-RS_2024_07
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 07/16/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..12892
/organism="Symphalangus syndactylus"
/mol_type="transcribed RNA"
/isolate="Jambi"
/db_xref="taxon:9590"
/chromosome="8"
/sex="male"
/cell_line="Jambi"
/cell_type="lymphoblastoid"
/tissue_type="blood"
gene 1..12892
/gene="NRDE2"
/note="NRDE-2, necessary for RNA interference, domain
containing; Derived by automated computational analysis
using gene prediction method: Gnomon. Supporting evidence
includes similarity to: 16 long SRA reads, 6 Proteins"
/db_xref="GeneID:129487545"
misc_RNA 1..12892
/gene="NRDE2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X4"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
/db_xref="GeneID:129487545"
ORIGIN
tccgcttcggggtcaagccccagagagcgccgcgaaaaccacatttcccagagtgcaccgcgacggcaggggtcctcagacaggctctcgcgcgccggcgtcatctttataaagaagaacggcggtgcggcctgtggtcatggcgctgttcccagcctttgcggcgcttagtgaggctcccgatggcgggagctccaggaaagagttagactggctgagcaacccaagcttttgtgtcggatccataacgtccctgagccaacaaactgaagcagccccagcccatgtttctgaagggccaccgctgacgaggagtcatctgaaatcagagtcttcagatgaaagtgacactaacaaaaagctcaaacaaacaagcagaaaaaagaagaaagagaaaaagaaaaaaaggaagcatcagcatcataagaaaacaaagaggaagcatgggccgtcgagtagcagcaggtctgagacagacactgattctgaaaaggacagaccttccagaggcgtcagaggcagtaaaaaggaatctgagaaaccgaatcaaggaaataatgctgcagctgatactggacatcgctttgtttggcttgaggacattcaggctgtgacaggagaaaccttcagaacagataagaaaccagatcctgcgaactgggagtacaagtctctctaccgaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcttgggaagggacttccacagagaagaagcattcacgcaagcaggttgaacgctattttactaagaagagtgtgggattaatgaacattgatggagttgccattagcagtaaaactgaacctcccttatctgagcccatctcctttataccagtgaaggacttggaagatgcggctcctgttacaacctggttgaatcctctggggatttatgatcagtcaaccacacagtggctacaaggacagggtcctccagagcaggaatcaaagcagccagatgcacagccagacagcgagagtgcggctctcaaggccaaggtggaggagtttaacaggagagtgcgggagaatcctcgggatacgcagctgtggatggcattcgttgcttttcaggacgaggtcatgaaaagtcctggcctgtatgccatcgaggaaggagagcaggaaaagcgaaagaggtccctgaagctcattctggagaagaagctggccattctggagcgggccattgagagcaaccagagcagtgtggatctgaaactggccaagctgaagctctgcacagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttgcatcccaataatacagccctttggcagaaataccttttattttgccagagccagtttagtaccttttcgatatcaaaaattcacagcctttatggaaaatgcttgagcactttgtctgctgttaaggacggcagcatcttatctcaccctgcgttgcctggcacggaagaggccatgtttgcactctttcttcagcagtgccactttctgcggcaggctggccactctgagaaggccgtctcattgttccaggccatggtggacttcaccttcttcaaacccgacagcgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagtggagagccccgggctggggagaagggagcccgaggctggaaggcgtggatgcaccagcaggaacgaggtggctgggtggtcatcaacccagatgaggatgacgatgaaccagaagaggacgaccaggaaataaaagataagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagatcagaggcactggcggccctggcgccctgataagaccaagaagcaaactgaggaagactgtgaggatcccgagagacaggtgttgtttgatgatattgggcagtctttgatcagactttccagccacgatcttcagttccagctggtggaggccttcctgcagttcttgggtgtgccttctggctttactcctccagcttcctgtctttatctggccatggatgagaacagcatctttgataatgaactttatgatgaaaagcccttgacttttttcaacccttcgttttctggggctagctgtgttggtcgcttggataggttaggctgtcctcgctggaccaggagtcagaaccgagagggcgaggagttcatccgcaatgtcttccaccttgtcatgcccttgttttcaggcaaagagaagtcccagctctgcttctcctggttacagtatgagattgcaaaggtcatttggtgcctgcacactaaaaacaagaagagattaaagtcacaagggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaactgcaacaacttttgcctgtggaagcagtatgcacatctggagtggttgcttggcaacacagaggatgccagaaaagtttttgacacagcactcggcatggcaggaagcagagaactgaaagactctgacctctgtgagctcagtctgctctatgctgagctggaggtggagctgtcgccagaagtgagaggggccaccacagcccgagctgttcacatattaaccaagctgactgagagcagcccctatgggccctacactggacaggtgttggctgttcacattttgaaagcgcgaaaggcttatgagcacgcgctgcaggactgcttgggtgacagctgtgtctctgatccagctcccaccgattcctgtagccgcctaattagcctggctaaatgcttcatgctcttccagtatttgaccatagggattgatgctgctgtgcggatatacgaacaggtgtttgcaaaactgaacagttctgttttcccagaaggctctggcgaggggtacagtgccagctcccagagttggaccagtgttctcgaagccatcacactgatgcacacgagcctgctgagattccacatgaaagtgagtgtttacccactggcccctctgcgagaggcactctcacaggctttaaagttgtatccgggcaaccaggttctttggaggtcctatgtacagattcagaataagtcccacagtgccagcaagaccaggagattttttgacacaatcacgaggtctgccaaacccttggagccttggttgtttgcaattgaagctgagaaactgaggaagagactggtggaaactgtccagaggttagacggtagagagatccatgccacaattcctgagaccggcttaatgcatcggatccaagccctgtttgaaaatgccctgtgcagcgacagtggcagccagtgccccttgctgtggaggatgtatttgaactttctggtttccttgggaaataaagaaagaagcaaaggtatattctacaaagcacttcagaattgtccttgggcaaaggtgttgtacctggatgctgtggagtacttcccccatgagatgcaggagatcctggacctgatgactgagaaggagctccgggtgcgcctgccgctggaggagctggagctgctgctggaggattagagagcagcggggaaatgggctgtgcctgcgaggctaagttgcccaccctgcggagctaggaggcgcgagcggagaacggaaacaaccctcaacttgaggaagttgagagctcgactccaaggtggacttgctccccctccccaagagctgactggcttgaactgtcatgagttcctggctgcccacaatgagggaccttctccacccttggcctctgcgcggggcggacatcagccagatacatcacagacctgattgggggcagggagtaaggaagtccaggaccaaaccatgctccccatgacggcagctggcgcctcagtccccatctgactcatgtttcttctcatctggttcaggacttagaagggcatggcctctgatcagctggtcccctcaaaccccagtggcaacctgtcccttgagagccaggaatggctcttagcagtgggcagtgagcccccgagaggataaagcggctgctcgaacagattgcgagcacattacttgctgcatgggaagaggcttaaaacaaatcaaagattctttaagggcattttacagaaaacaagatgtcgagagcatcactgttatttaaaagcctgtttgaggccgggcgcggtggctcacgtctataatcccagcactttcggaggctgaggcgcatggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaacccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctgctcggaaggctaaggcaggagaatggtgtgaacctgggaggcagagcttgcaatgagccaagatcatgccactgcactccagcctgggcgacacagcgagactccgtctccaaaataaaaaaaaaaagcctgtttgagattgctgacatgaagttctgaaagacgactacgtgcctcccaagactaactgtcagctcagagggctgagaagggggttctgagctcaagtcaaacagtggctcatgcgtttcatcagtaacgctcgtcatttccccaaaggagtcactgatcacgtcagaccacaggggtcggcccacctcaggtttgggacagtgttctttcctggaatgaagcagtggcaatgcctctggcacaggattgctgggcctgcgggaggccgggaggtacctctgtgctgtgtccccagttggaggaggcagctactacttgtaaggcacgcatattattttgcattggaaaagtgaagatgggcttgctgcagagggagtgatggcagagttcaccttgaatggttctactgaggaagggctccaaagagccagtgggttttccgcaggcagacggggctctccctgtctggctcaccagtgcaggaagccagggaagaaattactgtgggaattctgttatttcacaagcacttcatccctgcatccctgcacttggcaccgcaggcctcagtgaccagctgccgaaacggtaatttcagcattttggtcaataagcaaactggagaagcagctggggtggggtgcagttcagcccgctaccctgacactctaggccctggcatttgctttagctgcttttgtagaattgacatgagggagactgtccctctagaggaaaaggctcagctattaccaatgaggaaaaggcaatactgatgtgctagggttttttgttttttttaatctcaaacttacggaaaagatgcaagtacgttacaaagaattttgtttcctgaaccatgtgagtcagttgctgatagtctgctacccgtccacgatacagacactgaacaggaagtcagcatggacacagtactcccagcgggtcctcaggcctggtcatgtcctctaggaaaaggatccagttcaggagcaggagctgcacttggttgtcatctctttggtctccttctgattggaagctttttgacttccaagacgtggatacttttgaagtgttctgaatttgtagaatgttcctcagtttgtgtttgcctggtgtttcctcatcactggattcaggctaagcatctttggcaggagtgtgacagcactgacactcttgggtggcacgtactttcaaagtgcccgttactgatgtgcattttgaccacatggtgaagacagtgtctgctgggcctctccagtgtgactttccctttctaactgaacagtgttttgtgggagactctcaaaatctgtaagtaccccttcctcagcaaactttcagatcaattcgtatgtattggtgtgtgtgtgcagttccctatttaaagggctgtactgtattccattaacagttaactgttaggatgctcagattgtcccaggtttggccagtggaagcccctacacataggctttggtgtcctttggacgtgtccctatcattccttgagcactcccttgctttctggcaaaacagattttgggttcatcttgtcctttccctgcctagccctgaaatcattcctcactccttttagtgttagtggagaataatacttaccagcaaaggtctgggtctaggggtgctcactgcagttggggtgtcactgttcccaggcgctcccagtggacagacgtcgttctcgttttcttctttctgtgtctaactcctcagagaaacctggctcccaccgtcctgtttacctacctgactgcctccatacataagcagcctccctcccctgccacctccctcccctgccacctccctcccctgccacctccttcccctgccaccactccgtccctgcagatgccttcctcacccacttgggctctcatactgcacatcaggctgcccacactgactccccgtatcagaccaccccagccctgcacgtacaccccacacggatgccagccctcaccctgcccatgctgagtccccgtgctgtggtgttcctccacatggacagctccacaccctgcctgggctgacacccgccctccccacaagcaccctgtcctcaccctgcactgggccacccccacgtgtggatgtcctcggtggtaggcagagtggcgcccctaaagatggccacaccctaagccctggaacatgtgactgttacatggcaaaaggaactttgcagataaaaattaagattgtaaactttaaaacagggaaattatcctggattatctgcacaggtccaatgtaatcaatcacaagggtccataagagtagaaaaggcaggcagaaagaagcatcagtgggagagaaggactgggcctgctgctgctggtggaagatgaagggccacgagtcaggagggagggtggccttcacagactggcaaaggcctcagctggcagccagcaaggaaatgctgaccttggccggccccacaactccaggaaactaaattctgccaacaaccctcagcaaggaagcagaatctcccttagagacgccagagaacggtcctgccaacagcaagactttagcctggagacacccgtgttggacttctgacctacagaactgagataaaattgtggtttttatttattttttattcttttttgagacagagtcttgttgtgtcgcccaggctggagtgcagtgacgcaatcttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcctgactagctgggactacaggcacccgccaccacgcacggctaatttttgtatttttagtaaagacggggtttcaccatgttggccaggctagcctcgaactcctgaccttgtgatccgcctgcctcagcttcccaaagtgctgggattacaagcgtgagccaccatgcctggccaaattgtgctgtttttaaacaaagcctgtggtaacttgttatggtattaacagaaaactaatacacactcctcattcaatgtgggcacctacaacccatgccaggccacctgtcaagggaacgcttaccgtgatctgccccacttagtagctttaggcctgatttgttgagaaagagaaacgacagaaatagatggagaaagggaagggtaagttccgacatgtttctgaacaccttgaaagggatgaggtttctgagcccaagaacaagggcttttgagatatctctaggaatcctcagtctcttgggaacaccagtagttattttctgccctcagagtgctgagaacatgcatggtccacaaaacttccaaaaaggaaagctgtacttcctttggaagcaacagccacattaactcagcctttattatttaaacaacgaatatccctggctctgtggtagtaaccatttcccactgtaattactgttgaacgccagctctgggggtatgatgcggggaacgcatagtgaggtccacactccttgtgaccgcagcctgagttcctgtccaaaggcttccctgcagctgggtccacccacaggctgctgctgagcggtaggtgtgtgtgaagactgcagaaacaggaagtgtttgtgaaagagcacgctttattgggaagcagactgctgcacagtgaccaacagacaggccacccaatgggcacttacacatcgtactccaaaagacacaggatgttttgctaataaaaatcaatgagaacagggattcctctgggcaactcccccaacctcatccctttcagggattgagaaatctcccaaccattttcctgatggcagccatggttcattagagatacagcccctcaggggtgccttcctgtttcttataaagaacattttctttagattttttgaagtcttcatttgttactttcattctacgttctcttaaggccatcagaccagcttctgtacagattgcctgtaagaaacaacagtgtgttcaggaagtgaaatactcatttttattctaacaaggaattccaaaaaacctagtctgaggccaggtgcggtggctcacacctgtaatcccagcactctgggaggccgaggcaggtggatcgcctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattagccagggacggtggcaggcacctgtaatcctagctactcaggaggctgaggcaggagaattgcttgaacccgggaagtggaggttgcagtgagccgagatcaccccactgcactctagcctgggcaacaagagcaaaactatctcaaaaaaaaaagtctattctgaagtaaagcatgagacacctagactaaacacaaactgtttatttgggaaagatttgattttttaaaaaaatgttttaagcatcctattttctgaaaggatgcgaaatggcttaaactgggagttactgtaactaagaagactggcccaagggtcagggctgtgggttctagttttggctcaggttctaacaagctatgtggcttggcagatcaataaattcttacaccaccactttcgttaaagagaataatattcctaggaaataaacaaaattatgccctgaaacttagaggcaattgacagtatatgtctatttcatttacctgtagtcataaaagaacatgtattctggttagatactgtaagtggcagtatctatactatggaataatactacagagtatagcatttatttcaatatatttaatttctcagtaattacttgcccaaagtaaaagaaaacaataacccatgttacataggttgctgttactgttttaggcctgatctgtttagaaaggaaagagaaatgaaggaaatagatagagaaggacagcaaacaaacatattacgtgggttattgttttctttttcttttggccagtaattactgtggcaaaaaacacaatcctggcacagaagtttgtttggtgatggccatcaggtcatttacttcaaatggttcgggtgaaaaagttttgtgtacagaaagagaaaaagcaaatgggtaaaatgttaactcttggcaaatcactgtgctattgctgcaacttttttgaaggcttgaaaattgtcagtttttatcttaaaaataaagttttaagatcttccaatttttaaaaaagaagatagattttactcgccaacagagacatctagttctctaggactaactgccaatgatccgtgggctcagggcaggtgctggcctagaaaggcactgcttttgctgtccctacctaaccacggcacttatgcctgacgaaaacccagctctttccaggggaagcaggttgaacccatattcaacgctgccaggccttgctgtaaattctggtcagccgggaggaaatgtctgaactcatgtacatttgtcataaaaccaagaagtataatctggtacaaccttccagaacacaaattgggacatgaatgcagtgggtgcttggtccccactctgcggctctggggagagttctcccaggacatacccttccccgacctgggactaagcagctacatttgacacaccttgagaaagtcacctgggcctaaggcagcttagtaccagagactcagccttgtggctccaggtgatttagggtcattcactgcataaaatgatgcattaaaaatgacttcaaataacaagcacatataccatttggatataatcgtaaaccactatgatgattaaaatatagacacccacctgtccaggccaaccaccatcccaagagcacatatagactctttcctgattgacagccacattcccagaaataagctgacacggctaggctctcaccttgatgtcagcaccagagaggtcatctttagccatgatcaagtcgtccagggttacatcatcagccagtgtcatcctgcttgtgtgaatctgaaagatgcgcttcttcgtcttttcatcaggcagggggaactcaatcttcctgtcaatgcggcctgcaggtacgaaaagattttaagtcacactaccatccaaacccaggcttggccatggctcagaggcctcagcccatctccttaaatatgaagtttcagtcagacagtattctgtgggaaggatgtccaaattttaaaaagtaaacatacatctttgtaagtttgtaaatttctacatttgaattctcttcatttaaaagaaactctctgctttggtaccttcagaaataaatgaaaggagcaattcctgagtgaaactggacagacctattgtgttaaaaacattacaaaagacagcaaacaaatcactgtttcttctgatgctacctgaatgtaaaaaggacaaatcctaccatcacatgaattatttcttccagaaaaagcagcaagttcttgaggctaaaaagggaatattatggaaaagaaaagatcaagacataagactggaattcaaagggccaaggtgcacagaccatatcatgctctgttttaactctcatctcaaggggacctatttttttttaaattatcctaagtttcactgcagtatttgcttttttatgtattattttataggcctcccaaagcacacttaaacacaaatacataaacacattaatctccatgatgaaacaaaagcaaatttaacctggtctgataagtgctggatccaaagtttctattcggtttgtggccatgataactttcacatctcccctagaatcaaatccatccaactggttcagcagttccaacattgttcgctgaatttctctctcaccaccagaattggagtcatatctttggaaaaaaaaggaaggaatgaagacccaactgatcgcctgctcaaggggaattacagcaaagacctcattgtgacaaaacaccttacaaacattcctgtttcaactcacatggcactccctcaattatgctcagaaaaaaacacattcagcaccccttgccatggtctgaatgtatttccccaaatttatgtgttgaaacttaatccctactgggtggttaagagatgaggccttttggaaagggctaaaggcatgaggcagagccttatacagcatgagttccttataaaaagagaaaaaggccttatacagcatgtattccttataaaaatgctgcagggaactagcgtaggccctttttgctcttccatttgtccccttagcatttgtcccctctacagaataggtgccatctcggaagcagagagcagccctcactagacgtcaatgccagtgccttgatcttgggcttctcagcctccggaactgtgggaaatacatttctattctttatacaaataccagtcctaaggtattttgtttagcagcacaaatggactaagacgctccccatcagccaagttacagatcatattttttcatggcagtttctgtgcctgaaattgtatcatttattctgtttccatgtttggtatctgatccctacaacctgtgagctcctccagggcagagactgttgtgctcacaactgtgtccctagagtccagatggtcctggctcagggcgggtgctcaagacatggttattcacaagtggccaacctctctagacattcacagttcctgggcagttgttagctggctcctgggagagcagagcctaaagcatgcatggaaggccacgcatggcaagaactgtggccacagggagagccccctgagatcgttcattttcaagagaagagctatgcggtgttccctctaaacaaggcaaaataagtatgagaaagtctacctttttgtcccaatggcatcaatttcatcaataaacacgatggacggtgcatgttcttcagcaactcgaaataattcccgtacgagtttgggcccatcacctaggtacttctgaataagttcagagccaaccactctcaagaaagtggctgaggtttggtttgctactgctttggctaacaaggttttacctattttagatgaaaaaagataaaaaaaaaaagacacctgaagtgccgtttttaacttaaaaactcgtatcattaccaccttaaatggacaccaaaaacaggtgtgccctcatgctaaggcatgccaccaattcaagtgtcacgacatttcattctcctaagtagataagaggacatttagaaaaatctactaacatgtttggattatccttagctattttcctgaatttatgataacgtcagaaaatactttttacttggttattttccaaccctgacccagtttcccctgaagagctgcgaactataattacctgtacgaagaattgcttcgtaccagcaatgaaataaatctcattttttttc
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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