2024-09-08 11:30:16, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XR_008659362 12892 bp RNA linear PRI 06-MAR-2024 DEFINITION PREDICTED: Symphalangus syndactylus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X4, misc_RNA. ACCESSION XR_008659362 VERSION XR_008659362.2 DBLINK BioProject: PRJNA946760 KEYWORDS RefSeq. SOURCE Symphalangus syndactylus (siamang) ORGANISM Symphalangus syndactylus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Symphalangus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_072430) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Mar 6, 2024 this sequence version replaced XR_008659362.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028878055.2-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..12892 /organism="Symphalangus syndactylus" /mol_type="transcribed RNA" /isolate="Jambi" /db_xref="taxon:9590" /chromosome="8" /sex="male" /cell_line="Jambi" /cell_type="lymphoblastoid" /tissue_type="blood" gene 1..12892 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 long SRA reads, 6 Proteins" /db_xref="GeneID:129487545" misc_RNA 1..12892 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:129487545" ORIGIN
tccgcttcggggtcaagccccagagagcgccgcgaaaaccacatttcccagagtgcaccgcgacggcaggggtcctcagacaggctctcgcgcgccggcgtcatctttataaagaagaacggcggtgcggcctgtggtcatggcgctgttcccagcctttgcggcgcttagtgaggctcccgatggcgggagctccaggaaagagttagactggctgagcaacccaagcttttgtgtcggatccataacgtccctgagccaacaaactgaagcagccccagcccatgtttctgaagggccaccgctgacgaggagtcatctgaaatcagagtcttcagatgaaagtgacactaacaaaaagctcaaacaaacaagcagaaaaaagaagaaagagaaaaagaaaaaaaggaagcatcagcatcataagaaaacaaagaggaagcatgggccgtcgagtagcagcaggtctgagacagacactgattctgaaaaggacagaccttccagaggcgtcagaggcagtaaaaaggaatctgagaaaccgaatcaaggaaataatgctgcagctgatactggacatcgctttgtttggcttgaggacattcaggctgtgacaggagaaaccttcagaacagataagaaaccagatcctgcgaactgggagtacaagtctctctaccgaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcttgggaagggacttccacagagaagaagcattcacgcaagcaggttgaacgctattttactaagaagagtgtgggattaatgaacattgatggagttgccattagcagtaaaactgaacctcccttatctgagcccatctcctttataccagtgaaggacttggaagatgcggctcctgttacaacctggttgaatcctctggggatttatgatcagtcaaccacacagtggctacaaggacagggtcctccagagcaggaatcaaagcagccagatgcacagccagacagcgagagtgcggctctcaaggccaaggtggaggagtttaacaggagagtgcgggagaatcctcgggatacgcagctgtggatggcattcgttgcttttcaggacgaggtcatgaaaagtcctggcctgtatgccatcgaggaaggagagcaggaaaagcgaaagaggtccctgaagctcattctggagaagaagctggccattctggagcgggccattgagagcaaccagagcagtgtggatctgaaactggccaagctgaagctctgcacagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttgcatcccaataatacagccctttggcagaaataccttttattttgccagagccagtttagtaccttttcgatatcaaaaattcacagcctttatggaaaatgcttgagcactttgtctgctgttaaggacggcagcatcttatctcaccctgcgttgcctggcacggaagaggccatgtttgcactctttcttcagcagtgccactttctgcggcaggctggccactctgagaaggccgtctcattgttccaggccatggtggacttcaccttcttcaaacccgacagcgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagtggagagccccgggctggggagaagggagcccgaggctggaaggcgtggatgcaccagcaggaacgaggtggctgggtggtcatcaacccagatgaggatgacgatgaaccagaagaggacgaccaggaaataaaagataagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagatcagaggcactggcggccctggcgccctgataagaccaagaagcaaactgaggaagactgtgaggatcccgagagacaggtgttgtttgatgatattgggcagtctttgatcagactttccagccacgatcttcagttccagctggtggaggccttcctgcagttcttgggtgtgccttctggctttactcctccagcttcctgtctttatctggccatggatgagaacagcatctttgataatgaactttatgatgaaaagcccttgacttttttcaacccttcgttttctggggctagctgtgttggtcgcttggataggttaggctgtcctcgctggaccaggagtcagaaccgagagggcgaggagttcatccgcaatgtcttccaccttgtcatgcccttgttttcaggcaaagagaagtcccagctctgcttctcctggttacagtatgagattgcaaaggtcatttggtgcctgcacactaaaaacaagaagagattaaagtcacaagggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaactgcaacaacttttgcctgtggaagcagtatgcacatctggagtggttgcttggcaacacagaggatgccagaaaagtttttgacacagcactcggcatggcaggaagcagagaactgaaagactctgacctctgtgagctcagtctgctctatgctgagctggaggtggagctgtcgccagaagtgagaggggccaccacagcccgagctgttcacatattaaccaagctgactgagagcagcccctatgggccctacactggacaggtgttggctgttcacattttgaaagcgcgaaaggcttatgagcacgcgctgcaggactgcttgggtgacagctgtgtctctgatccagctcccaccgattcctgtagccgcctaattagcctggctaaatgcttcatgctcttccagtatttgaccatagggattgatgctgctgtgcggatatacgaacaggtgtttgcaaaactgaacagttctgttttcccagaaggctctggcgaggggtacagtgccagctcccagagttggaccagtgttctcgaagccatcacactgatgcacacgagcctgctgagattccacatgaaagtgagtgtttacccactggcccctctgcgagaggcactctcacaggctttaaagttgtatccgggcaaccaggttctttggaggtcctatgtacagattcagaataagtcccacagtgccagcaagaccaggagattttttgacacaatcacgaggtctgccaaacccttggagccttggttgtttgcaattgaagctgagaaactgaggaagagactggtggaaactgtccagaggttagacggtagagagatccatgccacaattcctgagaccggcttaatgcatcggatccaagccctgtttgaaaatgccctgtgcagcgacagtggcagccagtgccccttgctgtggaggatgtatttgaactttctggtttccttgggaaataaagaaagaagcaaaggtatattctacaaagcacttcagaattgtccttgggcaaaggtgttgtacctggatgctgtggagtacttcccccatgagatgcaggagatcctggacctgatgactgagaaggagctccgggtgcgcctgccgctggaggagctggagctgctgctggaggattagagagcagcggggaaatgggctgtgcctgcgaggctaagttgcccaccctgcggagctaggaggcgcgagcggagaacggaaacaaccctcaacttgaggaagttgagagctcgactccaaggtggacttgctccccctccccaagagctgactggcttgaactgtcatgagttcctggctgcccacaatgagggaccttctccacccttggcctctgcgcggggcggacatcagccagatacatcacagacctgattgggggcagggagtaaggaagtccaggaccaaaccatgctccccatgacggcagctggcgcctcagtccccatctgactcatgtttcttctcatctggttcaggacttagaagggcatggcctctgatcagctggtcccctcaaaccccagtggcaacctgtcccttgagagccaggaatggctcttagcagtgggcagtgagcccccgagaggataaagcggctgctcgaacagattgcgagcacattacttgctgcatgggaagaggcttaaaacaaatcaaagattctttaagggcattttacagaaaacaagatgtcgagagcatcactgttatttaaaagcctgtttgaggccgggcgcggtggctcacgtctataatcccagcactttcggaggctgaggcgcatggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaacccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctgctcggaaggctaaggcaggagaatggtgtgaacctgggaggcagagcttgcaatgagccaagatcatgccactgcactccagcctgggcgacacagcgagactccgtctccaaaataaaaaaaaaaagcctgtttgagattgctgacatgaagttctgaaagacgactacgtgcctcccaagactaactgtcagctcagagggctgagaagggggttctgagctcaagtcaaacagtggctcatgcgtttcatcagtaacgctcgtcatttccccaaaggagtcactgatcacgtcagaccacaggggtcggcccacctcaggtttgggacagtgttctttcctggaatgaagcagtggcaatgcctctggcacaggattgctgggcctgcgggaggccgggaggtacctctgtgctgtgtccccagttggaggaggcagctactacttgtaaggcacgcatattattttgcattggaaaagtgaagatgggcttgctgcagagggagtgatggcagagttcaccttgaatggttctactgaggaagggctccaaagagccagtgggttttccgcaggcagacg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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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