2024-03-29 16:16:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_006783740 4729 bp RNA linear MAM 12-JAN-2022 DEFINITION PREDICTED: Phyllostomus hastatus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, misc_RNA. ACCESSION XR_006783740 VERSION XR_006783740.1 DBLINK BioProject: PRJNA768865 KEYWORDS RefSeq. SOURCE Phyllostomus hastatus (greater spear-nosed bat) ORGANISM Phyllostomus hastatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Phyllostomus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025334033.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Phyllostomus hastatus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4729 /organism="Phyllostomus hastatus" /mol_type="transcribed RNA" /isolate="PE091" /db_xref="taxon:9423" /chromosome="Unknown" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="Peru: Loreto, Requena, Jenaro Herrera" /collection_date="2015-05-20" /collected_by="Laurel R. Yohe" gene 1..4729 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:123807990" misc_RNA 1..4729 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X3" /db_xref="GeneID:123807990" ORIGIN
cgaaggtcgcactactgtcgtccgttcgccggcgccatttatgtagaggggaagggaggtgcggcctgtgatcatggcgctgttcccggcctttgcgggtgttagtgaggctcccgatagcgggagctccaggaaagaattagactggctgagcaacccaagcttttgtgtcgggaccgtgacgactctgagtcgacaaactgaagaggccacagtgcttgtttctgaaggggcgccgcggaccaggagtcctctgaaatcagacccttcagacgaaagtgacgcgaacaaaaagcgcagacaaaccagcagaaagaagaagaaagagaagaagaagaagaggaagcatcagcaccgcgggaaaagcaggggaagacgtgggcagtcgggcagcagcagtgcgtctgagtcggacgctggctctgtccgggacaggccttccaggggcaccggagacggcaggaaagcatcagagaagccgagtcaggaaaccagtgctgccgcggaccccggacatcgctgcgtctggcttgaggacatccaggccctgacggaagacaccttcagaacagacaagaagccagaccctgcgaactgggaatataaatccctgtaccgaggagacatagcaaggtacaagaggaaaggagactcctgcctgggcatcaacccgaagaagcagcgcatatcctgggagggggcccccgcggccaagaagcacgcacacaggcgtgtcgagcgctacttcacgaggaagagcgtggcgctgctgaacgccgacggagttgccgtcagcagccagagccagcctctcgcgtccgagccagcgcccttcatcccggtgcagggctcggacgacgtggcccctcccgtggcaacctggctgaaccctctggggatttacgatcagtccaccacgcagtggctgcaaggacagggtccctcagagcaggagtcaaagcagccaggcgtagagccagaccgcgaggacgcgcttctcaaggccaaggtggaggagtttaacaggagggtgcgggagaatcctcgggacgttcagctgtggatggcattcgttgcttttcaggacgaggtcatgaagagccctggcctgtatgccctggaggaaggggggcaggagaagcggaagaggtccctgaagctcattctggagaagaagctggccattctggagcgagccatcgagagcaaccagagcagcgtggacctgaagctggccaagctgaagctctgcgccgagttctgggagccccccacgctggtcaaggagtggcagaagctgatctttctgcaccccaacaacaccgccctttggcagagataccttctgttctgccagagccagttcagcaccttttcggtctcaaaaattcacagtctgtatggaaaatgcctgagcactttgtcggccgtcaaggacggcagcatcttgtctcacccggagctgcctggcaccgaggaggccatgtttgcgctcttcctgcagcagtgccacttcctgcgccaggccggccacgccgagaaggccgtctctctgttccaggccatggtcgacttcaccttcttcaagcccgacagcgtgaaaggcctgcccaccaaaggacaggtagaattcttcgagcccttctgggacagtggagagccccgggccggggagaagggcgcccgtggctggagagcctggatgcaccagcaggagcggggcggctgggtggtcatctccccagacgaggacgacgacgacccggaagaggacgaccaggaaatcggagataggactctgcccaggtggcagatctggctggcggcggagcgggcccgcgaccggaggcactggcggccgtggcgcccggacaagaccaagaagcaaaccgaggacgactgcgaggacccagagagacaggtgttgtttgacgatatcggacagtctctgatccgactctgcagccaagatctgcggttccagctgatcgaggcctttctgcagttcctgggcgtgccttctggcttcacccctcctgcctcctgcctttacctggccatggacgagaacagcatcttcgatcacggacttcatgacgaaaagccactgacttttctcaacctttcattttccggcgtgagctgtgtcggccgcacggaccggttgggctgccggcgctggaccagaggccacgaccgagagggcgaggagttcatccgcaacatcttccacctggtgctgccgctgttctccggcggggagcggtctcggctctgcttctcctggttacggtacgagatcgcaaaggtcgtttggtgtcttcacactaaaaacaagaagagattgaagtcacaaggaaagaactgcaaaaaactagccaagaatctcctgaaggagccagaaaaccgcaacaacttttgcctctggaagcagtatgcacatctggagtggttgctgggcaacacagaggacgccaggaaagtgtttgatacggcactgagcatagcagggagcggagagctgagggaccgcgaggtctgtgagctcagtctgctctacgccgagctggagctggagctggagctggcagcggacctgagaggggccgccacggcccgggctcttcacatactgaccaggctggccgagagcagtccctatgggccctacgccgggcaggtcccagccattcacgttctgaaagctcggaaggcctacgaacgggcgctgcaggactgttggggtgaggacggcgtgtccgacccacctgcccccgattcccttaaccgcctcgtcagtgtggttaagtgcttcatgctcttccagtatttgactgtggggatcgacgccgctgtgcggatatacgagcaggtgtttgcaaagctgaagggctccgtttccccggaaggcccaggcccggaggccggcgccggcgctgggagcgtgagcagtgccctcgaggccgccacgctgatgcacacgagcctgctccggttccacatgagagtcagcgtctacccgctggcgcccctgcggcaggcgctctcggaggccctgaagttgtatcctggcaaccaggtgctctggaggtcgtatgtgcagattcagagccagtcccacaatgccagtaggaccagaaggttcttcgacgcagtcgccaggagtgcagaacccttggagccgtggctgtttgcaattgaagctgagaaaatgaggaaaaggctggtggagacggttcagagggtagatggcagagaggtgcatgccacaattcccgagaccggcctgacgcaccggatcagagccctgtttgagaacgcgacccggagtgaccacggcagccagtgccccttgctgtggaggatgtatttgaattttttggtgtccttgggaaacaaggaaaggagcaaaggtgtcttctacaaggcgctccagaactgtccttgggcgaaggtgctgtacatggacgccgtggagtacttccccgacgagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgccgctggaggagctggagctcctgctggaggactagagacccccccaccccgggggcgggggccacacgtcccaggccacgtcgcctgcccgagggagccaggggtctgaggtggctccgaccaggtggttaaagaagaggaccggccgggcagtagggcccaggggccagccagccatgtggcctggcagctccacttccgggggcgatgtttctgagaaacagatgaaactatgcccaggaatttagagagacgatgtgcttgacgtcaccagcagcaaggacatctgaagaggacctgtcttgctggagcgccccacacccaccccctctccttaacagcaccccatttcccgcgccctctgttagaagtcggccttaaacagccttcaagcacttcttcagcaaatggatcttagaaaagctaaaattcaccctttccagactgatctacagacaggagctggcaagattctctggtggttgtcaccacccaggccactgcccagctgttgagaggtcaccagggcagatctgtgacagctctgccttctctacagatgaaagaacctgcaaaggactggcccatggccaccctgaatggtcacgtccccggggccaggagtaggttccagaccccaccactgtgtcaacgtgagccactcccctccccccacatgtcactgctgggtcagtgcgacgggaacaccacgcatccactcgggaaccaccaaacgttccccgtgagcagcactgcgctgtagctgcttcgagaactgcacctcggtcctcacatgtcttggctctcgaacaactccgttcttggccaagctgctcacagaaaaaacgtcctggtcgtcttagcagactccaggccgcgctgacacctgtacgatcagtcatgtgtctctcgggagacaaaggagactgggttttcgaacaaattgcttccccaacagtttgtggaacaaattaagtttgagaaccgaggttccactgcaacacagaacgtactgctattctacgacctaactcagggctcacagacaggagacaccatggctggcaggctccgagttactggtctgatcagtaaagaaaacaaaacacgcggaagagctccaaagagctgctttaagggggacagcagcaagaaacccgcagtctaaacccagcaccggttcc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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