2024-04-29 13:29:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_006173805 939 bp RNA linear VRT 09-AUG-2021 DEFINITION PREDICTED: Chrysemys picta bellii high mobility group AT-hook 1 (HMGA1), transcript variant X3, misc_RNA. ACCESSION XR_006173805 VERSION XR_006173805.1 DBLINK BioProject: PRJNA210179 KEYWORDS RefSeq. SOURCE Chrysemys picta bellii (western painted turtle) ORGANISM Chrysemys picta bellii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024943629.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Chrysemys picta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..939 /organism="Chrysemys picta bellii" /mol_type="transcribed RNA" /isolate="RCT428" /isolation_source="small lake 1.3 miles south of Potholes Reservoir" /sub_species="bellii" /db_xref="taxon:8478" /chromosome="Unknown" /sex="female" /country="USA: Grant Co., WA" gene 1..939 /gene="HMGA1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:101932679" misc_RNA 1..939 /gene="HMGA1" /product="high mobility group AT-hook 1, transcript variant X3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:101932679" ORIGIN
ttttcttctctctctctccttcatttcttttgcaaagagcaggtagtgcattgggctcgcaagaaaccccgcctcctcctggccctttaaaggggcagatcccagagccatgtctccccctctccaaccaagaagagattgtgaaagacgatgagtgaatctagtgcaaaatccagccagcccttggcttccaaacaggaggaggacgtgtctgagaagagaggacggggacgacccaggaagaagcctcagcaggaacccagcgaggcaccaacccccaagagaccacgtggcagaccaaaggggagcaaaaataaggccacttctaaaggcaggaaagctgcagtaacacctgggaggaaacctcgaggccggcccaaaaaatcgcagaaggacgaagaggaggtgaacgtttcgcaggagtcatccgaagaggagcagtgaaaacgcttgaacccggcactacctcatcattcaacttaccaatttctcgtcaagttcttggactgaggaaggaacgaaacaaaacaaaaatccttggtactcttctcatgctccatgcctcaggctgggaattagactcagcaggaaagtacacagcgtgagcatctgcctccagtgacctacgggcccagagatcccttcgccacaccacactccatcccttagctacgaccaactgcagcggagctggaggttattactatggggaaggccaagggggtgaaagcagttttgggttttacgttgagagtttttactgggtgttcaagtcacctgtccagcagggcggggagggaccatgtgagcgtaagtcgcgtctggagaaagcaggcaggtggctgacagttggcaagaagtggaggtttttttggcccattgttaaagaccttttggtttcctatttgcagttacttgaataaaacattttacggatgt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]