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Previous release (v1)
2025-10-30 06:56:40, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_005820225 5665 bp RNA linear VRT 08-APR-2021
DEFINITION PREDICTED: Cygnus olor NRDE-2, necessary for RNA interference,
domain containing (NRDE2), transcript variant X2, misc_RNA.
ACCESSION XR_005820225
VERSION XR_005820225.1
DBLINK BioProject: PRJNA642912
KEYWORDS RefSeq.
SOURCE Cygnus olor (mute swan)
ORGANISM Cygnus olor
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes;
Anatidae; Anserinae; Cygnus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_049173.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Cygnus olor Annotation Release 100
Annotation Version :: 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..5665
/organism="Cygnus olor"
/mol_type="transcribed RNA"
/isolate="bCygOlo1"
/db_xref="taxon:8869"
/chromosome="5"
/sex="male"
/tissue_type="muscle"
/dev_stage="adult"
/geo_loc_name="Germany: Mainau"
/lat_lon="50.149850 N 11.063270 E"
/collection_date="2015-07-01"
/collected_by="Robert Kraus"
gene 1..5665
/gene="NRDE2"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 12 long SRA reads, and 100%
coverage of the annotated genomic feature by RNAseq
alignments, including 11 samples with support for all
annotated introns"
/db_xref="GeneID:121070780"
misc_RNA 1..5665
/gene="NRDE2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X2"
/db_xref="GeneID:121070780"
ORIGIN
aaactgaatgattttattatgaaatcagtttagtttatttggcatctagaatatcagtatcttgaatgggctttgagtctggtccttaagaaaacaggtaagtaatcaattttctatagaaaagtggtagttttcctagtactgaagtttacagagtgattttttacatatttcattacctacccaaataagattttaacaaatatttccatgaccaggagagttctgactgaactttcccagtagtttagactcgcattaagaactctgtgcacattggagttttcctaccattgaaaaccctgctctagattgccacctgttgtcatgcaatttgcagtaacgtaataatctgtaacatcgtgttaaatttggttgaaattggtcatgagttctaaaactacctggagaaattgtgccaggcagacggaaggacaaatgcttgttcaagtagcataattacataggctttcttttctcaggaaaaaggctagaaattgcacgtgacaagataattctttttgaaattgtctcttcagagtttagtcacaaattggtaatgtgattattttagatttttccttctatcttctgcattggttttaggcagatatatgtttctatatattactcactgcatttacacattctaatgttttacttcaaaacgtgacagatgttaacacacttgaacaaaagcattgctaaacatcattatgtgaacataaattttaaagtcagttctttccaagttggcagtcaggccctgctcttcttaaccacgcacgtttgatgacttccagactatcagtgatgatgactactattttgttctgaatcctcttctccctctgtctcacattcttctcttctgttgttagcaaatgaataatactttatagattaaaaataaattaagggtaggaaacaatgattaagaaagagttttctagttttccaaaggaagaagtcactcagagaattctgtgggatctgacagttcaatgttacaaaaaggctgcaaaaggcagtgaatgtagagttgacgaagtctgcagttggcacaaagtattcaggataatcagctggaaagctgactgagggaggttgcttaagtattgcacaaataaattataaaatgacagaaaaataaataacttagttaatgcaaagtgcttgtgtctagtgtttgtaggaaactaatcctaatagcgatacatatggtaagggagaatcttttgccactcaggaataggctcttaaaagacattgcagctcagaagagtcaaaaagagaaacagaattggtataaggcattgggaaaggagccaaaaccaaaccagtcattataatttcaagtaatacaatacttgcattgtttgtacactacaatgtgtacaaactatgatgtacaagtgtacatcgtttgtacacttgattactacatgaaattctggtcatgcagtggtactattgtatcaggtaaaaaaaacagaaaaattcaacaagggcattgtggaatggttttggtatgcaaagaaaaaaagcaagcttgtctcctcagatgactgaagtatgaaaactgaaatgagttatcataatggtgtataagaccgtgcaggtttttttttgttgttgtttgttttccttacaatgcaagaattaagcttaaggaaaaaaaaaaaaaaaaagaattactattttatacaatatgtaactcaagtgtaacatcctgcccaagtagtcaaaaccataagactgttcattattttcccagttcctttacagagggcatattcgatgattctattaaatgtgaatggtgtccccactggttaggggacttaaaaattgctgattgcaggagtttatttcttccttaagcctgcgctaccgccatttgaggcaggctctctggccagacggaccttcagttgggcttcactcccagtgtggtgcatgagggaaaaacggggtggcaaggaagaaaaggctgcttctgcctatggaaaccccatctccatcttttccccgcgggctgaacagtaatcccctccttcagtcccgtcagcggaggcccggagaatatacgatgcccccagcacaggcaccttcctcgcccagcacccaccgagggccggccgccattttgggagccggggcaggcgaactacatctcccagcaggcccggcgccgcggcgccatcttgccccttcgctccgcggggcagctctggcaggcagcgcgggcgccgagcggggctatggcgctgttcccggcctttgccggtgccgccgagcccggggagaccccagccggcagcagcgagggctccaggaaagacctggactggctgagtaacccaagcttctctacagaagatgcactgttagtgcatcaacgcactacagaagttgcaaattctacccctgaaaaatcaccactaataaggactagttcaagatcagagctgtcaggggaaagtgattcagatgagaatctgaaaaagtcaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccactataagacaaaaaagaaagccaaaggggactccagtagcagcgaatcagacttggacactaagcacgtcaaggacagagctacagcaagtggcagaaatcacgaaaaggaagcagcagcgaatctaggtgatacaacatcaaatcttaccaacaaccgctttgtttggcttgatgatatccaggctttcacagcagaaaccttcaggatagacaagaaatcagatcctgcaaactgggcctacaaatccctgtatcgaggggacattgcaagatataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacaaagtataacttgggacagtcctgcatcccaaaagaagcaatcacagaggcgacctgagcgctacttctcaaagaacaatgtgaagacattaaacacagatgggattcctgtttgcaataaaagttctccatctgactcagctgcttttataccagttttccaaacggaaagcagtgatccttctgacacaacagaggtaaaccctcttgggatttatgatccatcaactacagtgtggctgcaaggaaaaggatacaaaggtgcagaacatgagcctgtgaatacacagcaggcatttcaggagtctgggataaatgttaaccccgttctaatgacaaaagtggaagaatataacaagaaagtaagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccctatgcaagtatgggagagcaggaagtaagaagaaaatcactgaagttaatcttagaaaagaaactagctattttagagagggcaattgaaagcaatccaagtaatgttgacctgaaactcgccaggttgaaggtttgcacagagttctgggaaccaccagctttgatcaaagaatggcagaagctaattttcatacatcccaataacccggaactgtggaagaaatatcttctgttctgtcaaagtcagttcagtaccttttctgtttcaaaaatcaatgggctctacggaaaatgtttgactactctggcagctgtacaggatggcagcatggtgtcacatcctccactgccaggcacagaagaagctatgctagctatatttattcagcaatgccactttctgagacaggctggccattctgagaaagcggtgtctttatttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaagggacaggtggagttctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggagggcatggatgcaccaacaagaaaagggtggctggattgctgttgacaagcctgatgatgatgatgatgaagagatagatgaagatgaagaaataaaggataaaactctccccaagtggcacatttggctggatattgaatattctcgtgaagcaagacattggttaccttggaggccagacaaaaccaaaaagcaaactgaagaagactgtgaagatccagaaagacaggtattatttgatgatcttggaccatctatgatccagctttctaatccagaccttcaacatcaactactgtactcatttttgcaattcctgggagtgccatgtataagtaaactctttcctcccaacctctatattgccatggatgaaaataacatctttgacaatgtactttccgatgaaaagccactgacttctgttgatgtgccactgtctggattcaatagtattggtcatatggacacgatgctaagaggcagacagcatataggccactataaagatggagaggagttcatacagaacgtttttcatgctctatacctgctattttcaggaaaggaaaaatctcacctgtccatttgttggttacagtatgaaatatctaaggtagttcagtgtctccaaacaaaaaacaagaagaagctgaaagcacaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaaccgaaatgacctttctctctggaaactgtatgcctacctagagtggctgcttggtaacatcgatgatgctaggaaggtatttgacacagctcttagcacagcagagacgggaggattgaagagtcccaagctgtgcagcctcagtctgctttatgctcagctggaagtggaactactgaaaagcctggaaggagctgtcacgtcacgcgctgttcatatattgactaaattgactgaaagtggaccatacgtgccctataatggacaagtgttatctgttaatgtcttgaaagctcgtaagacgtatgagcgtgcagtgcaagattatttaagtaaaacaccagtttctgatcgggatcaggtcggtgagtgtaaccagctggtgaacttg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//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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