2024-09-18 09:40:30, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XR_005701441 3337 bp RNA linear VRT 25-JUL-2023 DEFINITION PREDICTED: Hirundo rustica NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_005701441 VERSION XR_005701441.2 DBLINK BioProject: PRJNA713843 KEYWORDS RefSeq. SOURCE Hirundo rustica (Barn swallow) ORGANISM Hirundo rustica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_053455.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 25, 2023 this sequence version replaced XR_005701441.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_015227805.2-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/19/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3337 /organism="Hirundo rustica" /mol_type="transcribed RNA" /isolate="bHirRus1" /db_xref="taxon:43150" /chromosome="6" /sex="female" /tissue_type="muscle" /dev_stage="adult" /geo_loc_name="Italy" /collection_date="22-May-2018" /collected_by="Giulio Formenti, Nicola Saino" gene 1..3337 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read" /db_xref="GeneID:120754445" misc_RNA 1..3337 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:120754445" ORIGIN
ggcggcggcggcggccgagacatggcgctgttcccggccttcgccggggccgcccagcccggggagccccccgccggcagctccgagggctccacgagagagttagactggcttagtaacccaagcttctctgcagaagatgcactgttactgcaccagcgcactacagaagttgccaatctcgttcctgaaaaatcaccattaacaaggacttcttcaagatctgagttgtcagaggagagtgatacagatgagagtctgaaacagacaagtaagaaaaggaaaaagaaaaagaaaaaacatcaccacaataagaagacaaaaaagaaaaccaaaggggattccagtagcagcgaatcggatgtggacactaagcacaccaaggacaaaggaagtggcaaaaatagtggaaaggaagcagcagcaaatcagggtaagaaagcatcaaatgttaccagcagtcgctctatttggcttgatgatatccaggcccccacagctggcaccttccggatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtaccgtggggacatcgcaaggtataaaaggaaaggagagtcctgtcttggcatagatgcaaaaaaacactgtataacttgggacagttctgcatcaaaaaagaagcgagcacagagtcgacctgagcgctactttacaaagaacaatgtgaagatgctgaacacagatggcattcttgtttgtaataaaaattctccatctgatccacctgcttttataccagtttcccaagtggaaagtgatgattcttcggacacaacagaagtaaatcctcttgggatttatgatccatcaaccacagtgtggctacaaggaaaagggtgcaagagcgcagacaatgagtctgtaaatgcacagcaaacaattcaagagcctgggataaacatgaactccattctaatgtcaaaagtggaagaatataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttatttcctttcaggatgaattaatgagaggacctagcccttatgccagtcagggagagcaggaatcaaggagaaaatcactcaagttaatcttggaaaagaaactggccattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcgcagaattctgggaaccaccagctttgattaaagaatggcagaagctaatttttttacatcccaataatccggagatgtggaagaaataccttctcttctgtcagagtcagttcaccaccttttccgtttcaaagatcaacagtctctatggaaaatgtttgacaacactggcagctgtccaggatggcagcatggtatcccatcctctgctgcctggcacggaagaagctatgctggctatatttattcagcagtgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctgggtcgttcttaagcctgatgatgaggacgatgaagatctggatgaggatcaagaaataaaagataaaactcttcccaagtggcatatttggttggatattgaatattcccgtgaggcaaggcactggttaccttggaggccggacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttctaatccaaagcttcaacatcaactattgtactcttttttgcaattcctgggagttccatgtacaagtaaactctttccttccagtctctatattgccatggatgaaaataacatctttgacagtgtgctttatgatgataaaccgctgacttctgctgatttcccactttctggattcaacagtattggtcatatggatacaatgtcacgaggcagacatcagataggccactataaagaaggagaggagttcatacagaatgtcttccatgttctgtcccagatatttacaggaaaggaaaaatctaacctggccatttgttggctacagtatgaaatatctaaggtaattcagtgtctccaagcaaaaaagaaaaagaagctaaaagcacaaggcaggaagagtaaaaagttggccaagaatttccttaaagcacctgacaaccgaaacaacctttctctctggaaactctatgcctacctagaatggctgcttggtaacacagatgattccaggaaggtgtttgacacagctcttggcacagcaggggcaggaggattgaagagtgcccagctctgcagcctcagcctgctttacgctcagctggaggtggaactgctagaaagtgtagaaggagctgttacgtctcgggctgttcatatattgaccaaattgactgaaaatggactatatgtgccctacagtggacaagtgttacctgtgaacgtcttgaaagctcgtaaaacatacgagcatgcactgcaagattatttcagtaaagcaccagtttctgatcaggatcaggtcaaggatactgatcagctggttaacctggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtattaatatatacacaggcttcagaaaaacttgaagtttctggttcacagaaacatgaaaatcctgtagagaattttggcattttgaattttcccagtgctcttgaagctgtcacactgctgcatacaaatctactgagattccacatgaaaattagtgtttatcctttgaatcccctgcgagaggcactaacggaggctctgaaacggtatcctagcaaccaatctctttggaggtcatacatccacatccaaaggaagtctcacagtgccagcaaagcacgaagattttttgatagtgtcacaaggtctgctaactctttagagccgtggctgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaggtccagagatgttggtgaaatacattgtactattcctgaaactggattaacaaatcggattgtagctctatttgaacatgcagttcagagtgaaaatggtacccattgtccactgctatggagaatgtatttgaactttatggcttcactagga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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