2024-03-29 21:08:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_005597936 5642 bp RNA linear VRT 13-FEB-2021 DEFINITION PREDICTED: Mauremys reevesii NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X5, misc_RNA. ACCESSION XR_005597936 VERSION XR_005597936.1 DBLINK BioProject: PRJNA699301 KEYWORDS RefSeq. SOURCE Mauremys reevesii (Reeves's turtle) ORGANISM Mauremys reevesii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052626.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mauremys reevesii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5642 /organism="Mauremys reevesii" /mol_type="transcribed RNA" /isolate="NIE-2019" /db_xref="taxon:260615" /sex="female" /tissue_type="muscle" /country="China: Wuhu" /linkage_group="4" gene 1..5642 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:120404309" misc_RNA 1..5642 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X5" /db_xref="GeneID:120404309" ORIGIN
agtgacttccccccgacgccattttgggagcaggagcaggcgggactacatttcccagcaggctggggcagcgagcggcgccatcttgcctcgttgggcggccggggtcttcttgggaagcaagaggggagaaagctgtggttcagcccatggctcttttcccggcctttgccggcgccgctgagcccggggagacgccagccagcagtagcgagggctccaggagagaattggactggcttagcaatccaagcttctgcacagaagatgcactgaaactgcaccagcatgctgcagatcttactcctgagagatcacaacttataagcaggagtccttcaagatcagaactctcaggaggaagtaataccaatgaagatctaaaaaaatcaactaagaaaaggaaagagaaaaagaaaaagcatcaccaccacaagaaaagaaaaaagaaaactagagaggaatcaagtaacagcgagccagactcagacagtgagtgtctgaaggataaacctagaggaagtgacacaaaccatgaaagagaagcagcaacattgaatctagaagacataacttcaaatggcgtcaccagtcgctttgtttggcttgaggatattcaggctttgacagcagagaccttcaggacagacaagaatccagaccctgcaaactgggaatacaagtcactgtatcgagggaacatagcaagatacaagcggaaaggtgactcatgccttggtattgacctaaagaaacaatgtataacttgggaaagttccatggtagaaaagaaacagtcccacaagcgacctgaacgctacttcatgaagaatagtgtgcggttattgagcacagatggaattccagtttacagtaaaagccaaacttcttcatctggtccaagcacttttataccggtttcacaactggacagtgatgctcctcctacaacaacctgtgtgaatcctcttgggatttatgatccattgaccacactctggttgcaaggaaaaggtcccccagagcatgagactttaaagcagcaggcatcccaagagaccagtgagaatgttaactctattctaaaggcaaaagtggaagaatataataggatggtcagagaaaatccaagagatgttcacacttggctggaatttgtttcttttcaggatgaaataatgagaggacccagcccttacgccatcaaagagggagagcaggaaataaggagaaaatcattcaagctaatcctagaaaagaaactggccattttagagagagctattgaaagcaatccaaatgatgttgatctgaaactcgccaagctgaagctttgtacagaattctgggaaccatcaagtttgatcaaagaatggcagaaactggtttttttgcatcccaataatccagtcctgtggcagaaatatctcttattttgtcaaagtcagttcagcaccttttccgtttcaaaagtccatagtttatatggaaaatgtttgagcactttggcagctgtacaggatggcagcatggtatcacatcctgtactgcctggcacagaagaagctatgttagctctctttcttcagcagtgccattttcttagacaggcgggccattctgagaaagccgtgtctttattccaagccctggttgacttcaccttctttaaacctgacagcgtaaaagatctgccaacaagaggacaggtggagttctttgaaccattttgggatagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcaacaagaaaagggaggctggattatcatcaataaacctgatgaggatgaggaagatgtagatgaagataaagaaataaaggataaaactctacctaaatggcaaatttggctggacattgaatgttcccgtgaaacaaggcattggctgccttggcgacctgacaaaactaaaaagcagactgaagaagattgtgaagacccagagagacaggtattgtttgatgatcttgggccatctttaatcagactttctagtccagatcttcagtttcagctgctatactcatttctgcaattcgtgggagtcccatgtgggcgtagtctctttccttcaaatctctatatcgctatggatgagaacaatatctttgacactgggcagtctgagaggccactgacttcttttgactcgctgctttctggagtcaatagtattggccatatggacacaatgaccagagggagacagcacataggacactgtaaggaaggagaggagttcatacagaatgtctttcatttaatgttgccattgttttcaggaaaggaaaaggcaaaactttctgtctgttggctacaatatgaaatctcaaaggttgttcagtgtctccaagcaaaaaacaagaagaaactgaagtcacaggggaagaaaagcaaaaaactagccaagaatctccttaaggcatctgaaaaccgaaacaacctttccctctggaaactgtatgcctacttggaatggttacttggcaacactgaagatgctagaaaagtgtttgatacatctctttgcttggcaggcactgaaggaatgagaaatacccaactctgtaatctgagcctgctttatgcttcactggaagtggagctactagagagtttggaggaaactgttatgtcacgtgctttacatatattgaccaaactggctgaaagtgggccatatgtaccttatactgggcaagtgctatctgtgaatatcttgaaagctcggaaggcatatgagcatgcattgcaagattatttaagtgaaagtccagtctctaattgggatcaagccagcagttctagccaactggttaatttagttggttgttatgcacttttccagtatttgactgttgggattgatgctgctgtattaatatgtagacatatttctgaaaagcttaaaggttctgcttcacagaagtttgaaagcattggagaaaatcttggcattcataatttccccactgctcttgaagctgtcacactcatgcacacaaatttactcaggtaccatatgaaagttagcatttaccctttaaatccactgcgagaggcactaacggaagctttgaagctgtatcctagcaaccagtctctttggaggtcatatatccagatccaaagcaagtctcacaatgctagcaaagcacgaagattttttgatagtgtcacaaggtctactaagtccctagagccgtggctgtttgcaatccaagcagaggagatgagaaagaagcttgtcgagaatgttcagagatgtcggagaaatatattcaacaattcctgaaactgggttaacaaatcggatcaaagctttatttgaacatgcaattcagagtgaaaatggtgcccattgtccattgctgtggagaatgtatttgaactttctgacgttccagtgtacatgacttaaccatttaataactgatggaagggcattgagcaagtccatgaggaaaccaggcagcccttgctgatggatgcagtctgcaagtatatgatctacatcatcttggccacagtgccaatggggggagtcatgaaggccctatttatagtcactagaagtatatcttatcactcgatctgaagcaattgagctttgcccacagatagtgtggaaagtcaaaaccaggggactggactgttggctctttcatgagataggcactagctatgctggaagcttgttcttgccacctagtattctgcccacaggtgacatcgaggttccttaaaaggaattgtccaaattgggtgccttgagctaaaatggtagattggtggattagagatctttgtaaagagtgatagacccagattctgtaaggtgacttgtcaactgatgtcagaaggggcagaaccggcagccaggccaggttggtctcatggtaccagttattatatacatagtttaattcagctacatgtccactagttctatgtgagaggggttgagccacattggggaacgatattctgctacagaatagcacaaggaaagcccagaacttcgcattagctcccttgtttgaaccagatagctggctgatcaggacgtttcttgtctttatttgcagtgaggtcttggtaaggtgctccttgcatgtccaggtgtggtccagtgtgacgtctagatgcacaggcattaggtcgttgtccagtctgagtccattcaggaagatgctgagctgtttgttggccttgtgtgtggtttagatgcaaacagctggaaacggtctttgacacttactttgagtctccattttttagagtactgggccaactttctcatatctgcatggaagactttgtctaggtgactgaaatcctggtcctgcactgccagacagatgttgtcagcttagataaaaggcctggctgtggtgtagggaaggtcatttgtgaagaggctgaaaagtatcagtgctagaactgagccctgaggttcaccattgttttggcggcctctcagcagcagttccacacctctgacagcctgtcatggtaggaccaatgacactttgcaccttaagcctgtataccagattgtgttatatgcagcagcaaggtctaagaatactgcacctgtcttctgcctggtctggaagccattcttgatgtaggcagtgagtgcccacacttgaccacaggtattgtggtttggtctgaaccctgcttgatctacactcaggataaggggtgggagcaattctctgacggataagcctttcaagtaatttgaacacaaatcttaacaaagagatcaggttgtggtaatatgctgcaactcgactgtctttctcaggttttggcaagactatttattacctttggtcctgtgcaagatcttaggctttttattcttctagatgactcttctagatgtctcttctagatgtctcttgatagcaaaatggctactcagtgttttctagttttttccctggctcttcaggaattcagatgagatatgtgttttcagtgttttgattgccctttctgtttcatctgtggcaaatggctgaagttttcagttttaggtatacactggttctagtgctgtcattatttcttcatctctccttcaaacgttttgtccttatctgcctttgcaacatttatcaggtggttagcggtgttgtttggagggactgggtgttggcactatgctggaggttgctgagcagcaccaagttttctgattaatgccctggctttatggctggatcttgaggtgtttagttccatgttaacctgctctcatcgcttctagaaatattcaagctgtctcaagatgtgtggtgatgtctggatcacgattttcttcatactgattgaggagttctgcatgctccttatctagatagagaatgtagacattataacaacctcttggaattgacgtgatgaaagctttataaatggctcttgtaaatagcatataagattcttcagtaaagatgatgtgtgataaaactgggccaatttgctctccaatagttccagcaaggtttttttgttggcacttacaggggggagggatagctcagtggtttgagtattggcctgccaaacc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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