GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-29 05:48:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_005555894            6143 bp    RNA     linear   VRT 05-FEB-2021
DEFINITION  PREDICTED: Crotalus tigris testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), transcript variant X7, misc_RNA.
ACCESSION   XR_005555894
VERSION     XR_005555894.1
DBLINK      BioProject: PRJNA699292
KEYWORDS    RefSeq.
SOURCE      Crotalus tigris (Tiger rattlesnake)
  ORGANISM  Crotalus tigris
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata;
            Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae;
            Crotalus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024096551.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Crotalus tigris Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6143
                     /organism="Crotalus tigris"
                     /mol_type="transcribed RNA"
                     /isolate="CLP2741"
                     /isolation_source="sand"
                     /db_xref="taxon:88082"
                     /chromosome="Unknown"
                     /ecotype="Arizona"
                     /country="USA: Arizona"
                     /lat_lon="31.38980 N 111.09225 W"
                     /collection_date="2018-08-08"
     gene            1..6143
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:120305013"
     misc_RNA        1..6143
                     /gene="TOPAZ1"
                     /product="testis and ovary specific PAZ domain containing
                     1, transcript variant X7"
                     /db_xref="GeneID:120305013"
ORIGIN      
gttctgctgtacgccaggaccaggccagcgcggacacgaggaaagaagctgaacggcccgaaatcctcgggcgccattttaagcgcaaatctctccttctgttcatgactctgtcacgcagccaaaataccctttgttaacatagcgggaaaaggaggcgaattcactctcttgaatgcaacagtaggcaaatcaagtaattcgaataatgttccttcggatttattgccggcgcggtgcgcaaaagttgcaaagtgaagaatctgcgtagacggtagagaagtggtgtctccgctttcttctggagaagagtctacgcaaactcggctacttttcagcatctggacagacgtcctcacagttgcattaaagccttcagtttcaaaaattaagaggatagaagcaggctgtgttgtttgaagacaatctttatctctctttctcctaatccccccccctttcagttatagcatcccaaagaagaaactttagattaatgtatagtgtctttacttgaatgactttcataatactgtctttaaataattcttttacaaaaacgaactcaaacaattagggttcagcttgtttggaaacaaaaccagtaggaatttttgtattgtaattatgttgaccaaggaagaatttatgtctatagttctggtgagacattgaatgtgagtttctaggaagctcacagttggctttctgaaaagctcatttgtttctacagttttaccagcacattttgcctattctattgcctaaaactaattcagaaatattagaaaattaatcagcagtgcatttaattttgtttgttactagaagttggaatggaaacccaaactggaccgacatcatctgttatagataattctgaaaaaaatgagagtggggccactgatcaatccttctctttgctgattccagtaaaatctcataacttaagtaagcaatacattcctacttctgaagcagtcataaaagataaggatcagcagaatcagaattttgtctttgaggaaagggagaagaaaagttgccatgatacagacactatgccggtcagctataactacattctagacattaaattgaaagatgaggctttgataaaaggaagagtttcaaagaagaaagtatcaagtgtgaggaaaagggagcatgatgttgctttgcaaaatacactgcagtcagaggataagaaaaggtgtaggagttcttcatcggaagtgggatttcaaggagatatcatagaaaaaagatatactaatcctttactagaacatgaacaaaaaatccagagtttcataaaaaacacaaaggatttaaagaaatgccagcatcccttgataatgagagaattacataagcagatgaaaactataactgaaaaggatgggacttcagtaataattgatttaagctctgaaaaagaatcaagaaatttgcagaaaaaccatagtcacttagcctcagaatcaagagttcagcataaaacatggaattttaggaagaggattaaaccagtttggccagaacaaaagcagaacaaaagtcaaagagtaaagagaaatctaactgagaagcatggtacttcagcaatgatagatttagggcctgaaaaaggaccagggaacccgcagaacactcataattgcacagtctcacagttgagacttcagcagaaaacatggaattttagggagagcattaaaccagtacaaaagcaggacaaaagtcagaaagtaaagagaagtatacgtaagttagaatgtatcatacagaacataagtgtattaaaatacagagaaaggaatttccccaaatcacaggtatatgtaaagtacccaattagtgtgatgtcagctgctgtgtcacatttttcaaataactctatagaaggaatagagagtctaatgaaaaatatcagggtaaattttgtaaaacaaaaagaactgactgtctcaaaattgcaggaacgtataaaagcttcagatgaaaataggcaagatttattgcattctatagcagactttgaggaaaataaatgcagaagtaatatagaagaagaaacaactaggatggtaacacaaatattttcaaaatcaaaaatgtatacaagtgatggtaaaaagcaaagttgggagtcagaaagaagtgttatagagatcctgaaatatagccagtggatttcagagaagaaaataactaaagaacaaatggattgtgtacctaaagaggaactgttggttaccaaaacagagggaactattaaggaagagatatatgaaaagaatgaaattgtgtcttcaactgatcttaaaaaagaaatcaaaacatttagagaggatacccttgacattttaagtagacaatatggaaggctgccacatacaattctgaatactttaaaggactgcaatatagagacaacattagaacagtctgcatgtctactaataactgaggcaattgagatcaagaacaacaattctgttagactttgcttttggaagcagactaacaaatattgtaatgctattttttctatcactaatattacatgtccagaaaattttgacataagaatacttgaaaagaaaattgaaaaaagcgcattggtgaagtatcagaatgaaagatttgaatggcttcctatgtataatattccgccctgcaaaaagagtctagtagtaaaatcatttgattgttattacattaagacgttgttacaacctacagatattgaatctcaaagccataaaattaattgtggatctctgcatagtgcatttgatcaaggaaaatccctatcttctaagggtatgggacaaaatgaacttggtagtatctctaatgtaatcacacaaaaagacattttagtttcaagagaaatgttccaacatactaaaagtcaaaatggaaagcgaatcaaggaaaataaattgtccatggattttaaaaagccaagcaaaaaactaaaaatgctagaagacctagaagaatcggcagtcgtgaaagttctcataaatgaggatatttccactgaacatggaataccaatagaagataatactattgccatagattctgcagtaatttcagaaaaactagattatagtgaaacaagtatcttatctttacttgattacatacctgatttaagtctggagctgccttctcaaaatcaagttgccactatgtctaacaataaaacagcagaccaagagcacttcattacatatggttacagtatttttgacaattcagtagttcttgaaactgacaagaataaattaaaagaaatagaggcatttgttgacttcagtaaaatggataaaaagaaatccatagcggagacaacggatagtaaaaaaagtatgatctgtaatagtaatgctgctccttatatgaaaagaaaaaggacatgtaatataaaaataaataaaactgatcggaaatcacaactgtatagctgtcaaagagcaatcccaattagtggtaaaaatatatggcctcgtgaatcatgcgcaagaacatccttgtgggttcgtaaaaattatacattagattcacaaagaggatatttagaaggtactgattcagtaacaaaatgcagcaaattggaagtccataaaccattggtagatagtaaaatatctataaatacaatggaatgtgttgaaagtccactttcagacgcgatattgcatatagaaaagacactttcacctattactgagaatagattttcttctaatggtatggaaagatctaaacaaagtacacttgatactgaaattataaaatcaaaagtgattttgaattcattagggaaagaagccaaagaaaaaaatataaatattcataatgactcgtttgcaggcattaggaaaaagaggacagataatcgaaaagcatcacttatcaaacaagaaccagtgttgaaaaatgtgacatcaggaaatttgtcaaacttcaaaattcctttacttaaggataaaggtaattttaaaaaactagaaactgaaacatcatctgaaaaatatacttgcaattcttcaaaagttttagagaatgctctttctttaaaagaagctagaattaaacagacttcatctgacaaaaattctagttcacaatttcaatctgaacaggagaattatatgtctgcattggaaaaatacataactcaatttaacagtgatatttctgaaaacttttctaaaaagagaagaatttgtaatactttggggagtacatcacatgagaataaactagaatcaccaactttgaatgctattcctttctctttgagaactggaaatatagaggagcaaatgctaaattctgctttggcctcagaaactattaaagttaacgtcaacaataagttggcacaggacaaagatgacatttgtgcagatattcttaaggcttatgaagatgatattcttataattgatgttattcaagatgatcctgatctgtttggagataatgaagaagaagatgactatgcaaagattcataatactaaaaacatttataccagtgttttttcagaaaaaaatctagaatggaaattgaaatcatctcaacttccaaaaagcaagcatttgaaatgtgttagagacagcttcattcaagattatgaaacactgaaattggatgaaaatactgatgatttggtgcttcaaggaggaatatcagaatcatctcctgaagatggacaactgtcagaaccgaataaacttaccaaagtttttgatacagatgaaaagtatgaattttcggagaaattgcttgctatgcaagaacagaaaacaaatgttcaagactttgcagaaattgagaataccctaactgttgaacctctgatctgtgatcatcaattggaatttccagttcctaacgtgaaggtcattgttcctcaacagcaagacccagcactaaaatcaaggatgaatgatttcagattcccaaggaaatgtcctcctttgcccttatcaattactaatagttacaaaacatggaaaggagaaaaacatccagcgactaatttaggattgactctacctcgtggatattgcagataccatttcaattcattgaatggctgtgagaagccaaactgctggttttcgcatgttcttatatcaagagatgataagctttgcagtgaaataattaagaaatatataagcattggtggcatagttttgctgcaacgggcagtacatatattcacaaattactgcaaagaaggtactgctgtatatcacttggattcgcaaatgttccatgatctcctaacatctttgcttcagttctctttgctgaaagaactttttcatgtaatacacactggcatcaggattaaaatattaccaactatagacattctactcaaaatgtttgaagaagtggcttctatgaaagtaaaagaggcagtacctgaattatctgacatcttttgtaagcttattgatgctggaatggttcttgaacatgaacacattagacatatcaccaacttattaaaccagttacatgtttccagtcaggaaattactatgcttatatccagatttcaggaaagacgttttcacaaggccatcttttgtgattttgattcaacaatagcagaatttaagcattgtaaagaaaaaagtgactgggctaaattgggaactttgtatgttaatgtgacgagagggtgtaaaaatgctgattatcttgaaaaatactcgcgacatgtagccagcatactaatcagttcagtgaaagaagagaagccaggcattccattttgtgaatttgctgctacaggccaagaagattctggatgtgtttcatgctttaaagatacacttcacacttcttaaaggattttttgaatcagagcaatcagtatcaagatgtcaaatggttaatattgctgtggaaatctttctcaaatgtgggaaccttgatggagtactatgggtattgagaggatcagaatggataataaatacagcagcatggccttgtgaaagaatggatgtcctcaatcgacataatttgctatatgctgtagcatctgaattaatgacaaaaaaacggtatgatgaaacgtttgaagtcttaaaaaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]