2024-04-18 13:34:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_005016468 4418 bp RNA linear MAM 28-OCT-2020 DEFINITION PREDICTED: Balaenoptera musculus uncharacterized LOC118881207 (LOC118881207), ncRNA. ACCESSION XR_005016468 VERSION XR_005016468.1 DBLINK BioProject: PRJNA607322 KEYWORDS RefSeq. SOURCE Balaenoptera musculus (blue whale) ORGANISM Balaenoptera musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045799.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Balaenoptera musculus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4418 /organism="Balaenoptera musculus" /mol_type="transcribed RNA" /isolate="JJ_BM4_2016_0621" /db_xref="taxon:9771" /chromosome="15" /sex="male" /cell_type="Fibroblast" /tissue_type="Epidermis and Blubber" /country="Pacific Ocean: Santa Barbara" /lat_lon="34.41938 N 119.69905 W" /collection_date="2016" /collected_by="Jeff K. Jacobsen, Susanne Meyer, Li-Fang Chu, Jessica Antosiewicz-Bourget" gene 1..4418 /gene="LOC118881207" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:118881207" ncRNA 1..4418 /ncRNA_class="lncRNA" /gene="LOC118881207" /product="uncharacterized LOC118881207" /db_xref="GeneID:118881207" ORIGIN
tgcgtggacgccagctcagccacccttaggccttggagcccgcgcggatccgggacctgaggtgacctctctgtcccagttggacgagacctcacctcgtccggagaactacggacaaaggcctgaacgggcccggaagaaaagaaatgtcttctggaaatgacttttcgaaatggagttgtttgaccacctctagaggcgacatcaggagccacagaggtccacgtttgtccagtgggttagaggacatggaatggcagacgttgaggaggaagaaaagaaggttctatgccagactggtcacagttagaagacttttccatattagaaccattgttttgtgtgtgcattttattccttactactgtaatgtagttgacaataagtacttttttgaaatatctagcctttctagatgttctgaagtgcctgatatatgttcaaagtagaggtagtaaaaagacattttgtaaatatctttttgttaaaattcgtatgaaatgttgttttggggggaaggggtggccaaaccacctttttgaacagtacgcagtatgcactgtgtttgtgcactggttcaaggtcggggagaggagaaggaagtgcaaagagctctgtgcagtgtgtttatagtgaggcaagattaaccattgtcttttttatgttcctgcattttgtttcactttgctgtgtatatagtgtatataatggacaaatgagtcctaatttacaacacctagtctttctagatgttaaagaggttgccagtgtatgacaaaaatagagttagtaaataatacattttgtacattttgtgttaaaatttctaggaaagattgtcttctgaaaatttgagcattatagccctctgggttggaggtgggggagagagagaagggggttggtcttagaatggctagaatgctggtattttgaagacactttcagattataactgttacatgtgtgcagttcgttcaatactgctctgtatatagtggacaaattaagtccttatttgaaacatctagtccatctagatgtttagaagtgcccaacgtatgttaaatgtagagatagtaaaatatcactttgtaaatatctttttgctaaaattcataggaagtactgtctttgggaatgttaaatgttaaaccacctctctgaacagtatactattgtctatacttgttcagtggtttggaggagggagggaaagaattgcaaaaggtaatatgctagtgtgttcatacctggacgttttcatacaaaaccattttttatatgttcattttgttttgctgtgtatatagtgtatataatggacaaattgagccctaattttgcaacatctagtctctagatgttaaaggggttgccagtgtatgacaaagtagttagtaaaattagcacattttgtccactttattgaaattcataggaaagcttgtcttctgtaaatgacttttggatatgaatttgttcaaccatctctaagcgttacacatgcatgtacttgtccactggattggcggcagagagaaggaagtgagggaggaaatggttcaggccaaaatggtcatatttagaagatacctcagattataacccttgttacatgtgtgcaattttatttaacagtgctgtgtacatagtggacaagtaagttcttatatgaaatatctgttctttctagatgtttagaagtgcttgatgtatttaaaagtagttttagtagaataatgcttcttgtaaatagcttttaaaaactgatgggaaatactgtctttggaaatggaattgttaaacctcctctctgaacagtatactctgtgcttgttcattgggtttaaggaggtgggagggaagattgcaaaaggtgttttgctagcagttactagaacattgcaacttacccattgctctatatgtgacatgcattttgtttaactttactgtaaatattttgtatatactggaccaatgggtcccaattttataatatctagtttctagatattaaagaggttgccaatgtatgacaaaagtagagttagtaaactaacacattttgtacactttgtgttaaaattcattgaaaggccgtcttctgaaaaggacctttggaagtgaaattgtaaatcacatctaagtgacacctgtgcctgtacttgcccaatgttggatggatggccgaaaggaggtgctgggagaaatgaagtgttctagattagaatgttcctatgtagaagacactttcagatctaaccattgttacatgtgtgtagtttattcaacactactgtgtatatagtggacaaacttaagtccttatttgaaacatctggtctttctagatgtttagaagtgcacaaagtatgttaaaagtagaggtagtgaagtaacataatttgtagatatatccttttgttaaaatccatatgaaatactgtcttttagaaatggagtgatcaaaatgatcaaaccacctctctgagcagtacacattattttatttgtgctggttcagggagaaagaagaaagtgtaaagggctttataccaagactaaccattgtccggtatgtctctgcgttttgttttacttggctgtgtacatagtgtacataaaggacagaagtccaaatttacaacatctagtcttcctagatgttaaagaggttgccagtgtatgacaaaaatagccgataaatacattgtgtacgctttgtgttaaaattcataggaaagacttctgaaaacaactggaggaagtaaaattgttaaaatcccctctaagcattacagatgcttattattcttgtctgctgggttgatagagatgagaaggggaagcttctaggccagagtgttcctgtttaggagacactttgtgactataccctttgtgtgcagtttcttcagtgctactacatgtatatatagtggacaaacttaaatccgtatttgaaacatctaatctttctagatgtgtaaaagtgcacaacatatgttgaaagtagagagttaaaagtaacacgttttaagtattttttttctgttaattcataggaatggttgtattgggggagtggaaattgttaaacttgagtcttggagagtaagctgactattcactgggtggtggggaggcagggagcagacagggaaggaagtacagagaagggatctgtgcccatgagtctttagacaagttcagattgtctaaccattgttctatttgtgtgttttagttaattgctgtgtattaaagaataagcaagtcctaatgcccaaagtatattaaaagtagaggtagtaaaataaccccttaataaatgcccttttgttggtttttaggaagggctgtgtcttctgggagcgtctatgttaatccacctcttggagctagatacagtcctgtacttagtcgctgatacgctggaggaggggtaagaggaagggtgaagggaagggctcttggctaatatctccatatctagaagacagttttaggttataaccataggtctaaatgtgcatttttgtaaagtaccaatgcttattatggacaaggttcattcattattttgcaacatctaggctttttaggagttctgaggtgacaatgtatgataaaaagtagagctagtgaattaaccaatttgtaaatatctttgttaccattgataaaaaagtagcatcttggacatggaattgttaaaccatctgagaaatgtacaccaggacttgttcattaggttggcagcagaggggcagaaggaagtataaaagggagggaagtatgtggatatgttcctttttatattttgatgataaccattgatgtatgtgcatctcttagctgtactataggaatacattgttaagtaattcaatggaaacatacctccttgctaatactttaatagtttagatcagataatgaatcctcttaaaagcattatactttgggtactgtgttgcattatgtctcatttttaattgaacgttaagggaatgtagtattttaagcataactctgccaatatctttatctagaggcctgttgccatttttgtcttttctgaagtttttgtcgccaagaaaggattacattttttttccttccagattgagttggtgtagtgtatttttggttatcaaaatactcatagctttgggactttgaagtggtaaatattcatgatgtgtgaaaagcatgatacataactgtatgatcttaattacataaaaatggatgcttagttgtgtttaaatacacaaacgagacctagaaggacacatcaaatggtgaactgcttgtgatgatggatgactttgttttttgcttcttgtgttctttggtttcctattatgcacatgttaacttttaagaaataaatgttatattgaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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