GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-19 13:39:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_004463679             930 bp    RNA     linear   INV 12-APR-2020
DEFINITION  PREDICTED: Bombus vancouverensis nearcticus uncharacterized
            LOC117153909 (LOC117153909), ncRNA.
ACCESSION   XR_004463679
VERSION     XR_004463679.1
DBLINK      BioProject: PRJNA623917
KEYWORDS    RefSeq.
SOURCE      Bombus vancouverensis nearcticus
  ORGANISM  Bombus vancouverensis nearcticus
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus; Bombus
            vancouverensis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_022881772.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Bombus vancouverensis nearcticus
                                           Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Bombus vancouverensis nearcticus"
                     /mol_type="transcribed RNA"
                     /isolate="JDL1245"
                     /isolation_source="worker"
                     /sub_species="nearcticus"
                     /db_xref="taxon:2705178"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="USA: California, Tulare County, Sequoia National
                     Park"
                     /lat_lon="36.59 N 118.74 W"
                     /altitude="2214 m"
                     /collection_date="17-Jul-2015"
                     /collected_by="Jeff Lozier"
                     /identified_by="Jeff Lozier"
     gene            1..930
                     /gene="LOC117153909"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 197
                     samples with support for all annotated introns"
                     /db_xref="GeneID:117153909"
     ncRNA           1..930
                     /ncRNA_class="lncRNA"
                     /gene="LOC117153909"
                     /product="uncharacterized LOC117153909"
                     /db_xref="GeneID:117153909"
ORIGIN      
ttaatctaaataatgtaaataacttataatacaaatatattatatataattgttacaacagtttaactaattaaaacatcaatgtttcgaaaacaatagtcaattattacagtaattcaaatattcccgcttgcggtatcgatcaagagggaagtacaacatatatatatatatatatacgtatataaatatgtatatataccgtgcaatgcaacgaaagtgttgcttttacaatatacattatatttaactacatagatttgaggaatttcagcaaagccgtttgatttgaaaaaaattttaaaaaagcttaatataaaaagtgttataaaaattaattactagacaagagtataaacttttaactattgtagataacctgttgttactcacagtaaatataaacgtaatcaaagcataagaattttattgtaaatgagtgattctgcataaattgcactattgtacaaaacgttaataagagcaccttgaagaaagaaagaaacttcgtcttcatataaagcttattttgattttaaaagttaactaaaaagtaaaaagcaataatcaattgaaaatgtttaaatttttggtacatctaaatgtctattttgcaaatagtggtattattgaatagaaatatgtacactaatatcttttttagataaccttaagcattgggatttatgctggtatatatataagtcaaaactatgagatacctcgtgtagatgagcctactaagataatagaacgaataaaggaaattacagatgaatataaaaaaaaataattaataatgatttatctaataatactatgacgtttgtggaatacgttttaatccagtttattgtacatatacgtttatatatataaacatgtaacacaatttgatttggtttgattttaataaaacattttatgtaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]