2024-05-05 05:55:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_003863397 773 bp RNA linear VRT 01-JUL-2019 DEFINITION PREDICTED: Oncorhynchus nerka uncharacterized LOC115127581 (LOC115127581), ncRNA. ACCESSION XR_003863397 VERSION XR_003863397.1 DBLINK BioProject: PRJNA548514 KEYWORDS RefSeq. SOURCE Oncorhynchus nerka (sockeye salmon) ORGANISM Oncorhynchus nerka Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021816460.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oncorhynchus nerka Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..773 /organism="Oncorhynchus nerka" /mol_type="transcribed RNA" /isolate="On170113-E2" /db_xref="taxon:8023" /chromosome="Unknown" /sex="female" /tissue_type="Caudal fin" /dev_stage="fry" /country="Canada: Pitt Lake, BC" /genotype="Doubled Haploid" gene 1..773 /gene="LOC115127581" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns" /db_xref="GeneID:115127581" ncRNA 1..773 /ncRNA_class="lncRNA" /gene="LOC115127581" /product="uncharacterized LOC115127581" /db_xref="GeneID:115127581" ORIGIN
tctctgtcagggtgtttgttccagagttcgtgtcgtctctctcggtgtctgtgagtggctgtacctggggggagggacttgtgaacggagactgttcattgtccctcacgctgggctcctcctccccccagggggagcttgtgagggtgaactgttctctgattggctgctcggccgttctcctcgctcccccatggaatacttggatacgagtcaccgtggatagttaccatagcaaccgaaccacagccttcagcatctcagtcaactacacagtgggttgtaagcctcagagcgtgggtatgtctggagacgattacattaacaggctccatggcaacagcggcacgacaacatcaccaggcaacggttctgtggtcgccgaggcaggtcgtcataacaacgtgtcgtcggagtgtgtgtggagtgtcccggtgctccgtgaggaactagacgttctgtctgtccggttcactcccattaacggacctaatgtaacggtcacacacacacaccccacgctcctcacctaccccctcaacacacagtctactggagggaccttgaacctggagattacactcaacactgtgagtaacacacacacaccccacgctcctcacctaccccctcaacacacagtctactggagggaccttgaacctggagattacactcaacactactaatacaacgttaggaaacagcagtgtgatggcctgtctctcttcctgggctcctgtcctcgcactcaactactcccatccctgtca
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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