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2025-08-29 09:12:13, GGRNA.v2 : RefSeq release 231 (Jul, 2025)

LOCUS       XR_003582214            5983 bp    RNA     linear   ROD 01-MAR-2025
DEFINITION  PREDICTED: Marmota flaviventris NRDE-2, necessary for RNA
            interference, domain containing (Nrde2), transcript variant X2,
            misc_RNA.
ACCESSION   XR_003582214
VERSION     XR_003582214.2
DBLINK      BioProject: PRJNA1228026
KEYWORDS    RefSeq.
SOURCE      Marmota flaviventris (yellow-bellied marmot)
  ORGANISM  Marmota flaviventris
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_092499) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 1, 2025 this sequence version replaced XR_003582214.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_047511675.1-RS_2025_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/25/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5983
                     /organism="Marmota flaviventris"
                     /mol_type="transcribed RNA"
                     /isolate="mMarFla1"
                     /db_xref="taxon:93162"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="brown fat"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Gunnison County, Colorado"
                     /lat_lon="38.718100 N 107.199200 W"
                     /collection_date="2017-07-11"
                     /collected_by="Gregory Florant"
     gene            1..5983
                     /gene="Nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon."
                     /db_xref="GeneID:114089629"
     misc_RNA        1..5983
                     /gene="Nrde2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /db_xref="GeneID:114089629"
ORIGIN      
gcaggggccatttccgtagagaggaacggcggagcggcctgtgtccatggcgctgttcccagcctttgcgggcgttagtgaggcccccgatggtgggggttccaggaaagaattagactggctgagtaacccaagtttttgtgtcggaactgtaactaccctgagccaacaaactgaagaggccacagctcttgtttctgaagggtcatcaccaacaaggagtcctctgaaatcagagccttcagatgaaagtgatgctagcagaaagctcacacaaataatcaggagaaagaagaaggaacaaaagaaaaaaaggaagcatcagcaccacaagaaaaccaagaggaagcaccggcagtcgagcagcagcgagtctgagccagattctgattcaggaaaggacagatcttccaggagcatcagaagcagccagaagcaagctgagcaacccaatcaaggaaataatactgctgctgatgctggacttcgctctgtctggcttgaggacattcagtctctgacaggagaaaccttcagaacagataagaaacccgatcctgcaaactgggagtataagtctctctaccgaggggatattgcaagatacaagaggaaaggagactcctgcctgggcattaacccgaagaagcagtgcatatcttgggaaggggcttcctcaacaaagaagcgtgcgcacaggcacgttgaacgctattttacgaagaagagcgtggggttgatgagcgttgatggcgtttctgttagcagtagaactgatcctccctctgcagagccggtcttgtttatccccgtgaaggacttggatgatatggcttctcctgttacaacctggttgaatcctttggggatttatgatcgttcaaccacacagtggttacaaggacagggtccttcagaagcagaatcaaagcagccagagtcacagctggacagagagaatgctcttctcaaggcaaaggtggaggagtttaataggaaggttcgggagaaccctcgggatattcagctgtggatggcatttgttgcttttcaggatgaggtcatgaggagtcctggcctgtatgctatggaggaaggagaacaggagaagagaaagaagtccctgaagctcatcctggagaagaagctggccatcttggagcgggccattgagagcaaccagagcagcatcgatctcaagctcgccaagctgaagctctgtgcggagttctgggagcctgctgcgctggtcaaagagtggcagaaactggtctttttacatcccaataacacggtcctttggcagaaataccttttgttttgccagagccagtttagcactttttcaatatcaaaaattcacagtctttatggaaagtgcttgagcactctgtctgctgttaaggatggcagcatcttatctcaccctgctctgcctggcatagaagaggccatgtttgcactccttcttcagcagtgccactttctgcggcaggctggccactcagagaaggccgtgtctttgttccaggccatggttgacttcactttcttcaaacctgacagtgtgaaagatctgcctaccaaattacaggtggaattctttgagcccttctgggacagtggagagccacggcctggggagaaaggagcgagaggctggcgagcgtggatgcaccagcaggagcggggtggctgggtggtcatcaatccagatgaggatgatgacgagccagaagaggatgaccaggagataaaagagaagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagatcaaaggcactggcggccctggcgccctgataagaccaagaaacaaactgaggaagactgtgaggatcccgagagacaggtgttgtttgatgatattggacaatctctgatcaggctttccagccaagagcttcagttccagttgatcgaggcctttctgcagttcttgggtgtgccttctggctttgtccctccagcctcctgcctgtacctggccatggatgagagcagcatctttgatagtggactctgtgatgaaaagcccttgacttttttcaacctttcattttctggcattagctgtgttggctgcatggaccggttgggctctctccgctggaccaggggtcacaatcgagagggcgaggagttcattcgcaatgtcttccaccttgtgatgcctttgttttcgggcaagcaaaagtctcagctctgcttctcctggttacggtacgagattgcaaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacaggggaagaactgcaaaaaattagccaagaatctccttaaagagccagaaaaccgtaataatttttgcctctggaagcagtacgcacatctggagtggttgcttggcaacatagaggatgcccgaaaagtttttgatacagccctcagtatggtgggcagcagcgagctgaaggaccgtgaactttgtgaactcagtctcctctatgctgagctggaggtggagctgtcactggacttgtcaggggccaccacggcccgagctgttcacatactaacccgactgacagagagcagtccctacgggcccttcactgggcaggtcttacccactaatgttttgaaagctcgaaaggcttacgagcatgcgctacaagactgtttgggtaagagctgtgtctctgatccaactcctgctgactccttgaactgcctgagtagcttggtcaaatgctttatgctgttccagtatttgaccgtagggattgatgctgccgtgcagatatatgaacagctatttgccaaactgaagggttctgttttctcagaaggctctggcatggaggacggtgccagctcccagaatctgaccagtgttcttgaagccatcacgctgatgcacacaagtctgctgaggttccacatgaaagttaatgtttaccctttgactccgctacgagaggcgctctcggaggctttgaggctgtatcccggcaaccaggttctttggaggtcatatgttcagattcagaataagtctcacagtgctagcaagaccagaaaattctttgatgcaatgaccaggtctgccaaacccatggagccgtggttatttgcaattgaagctgagaaaatgaggaaaagactggtagaaactgttcagagggtgggaggtagagagatccacgccaccatcccagagaccggcttaacacatcggatcagagccctgtttgagaacgcagtgcggagtgaccacggcagccagtgccccttactgtggaggatgtatttgaattttttgggagaggagaactgtggtgccccgctcacggctgacacgggagctgctccagggaggctggcctccatgttccttacgtgtgcgcgactcggctctgggggctgagggtgaaggaagggggcgcctctgtgtgagccctgtcctgcccctctgaagactcattggcaggatcaggatgtgcacagagatggtaaagtgtgaccatttgcccactgcataggatgccagtcgctgaaacaaattttcaaaagagttattcacaaggcagctgagttggagtaggaggccacacatctccctgcctgagggtaggtgtgttggatatttatggggtaaagaagcagggtgatctgtggtgtggggagaatgattggaagatgaagtaatctgtgtttcatgcacatgtaatgaaacttcatggctctttatgagacacatgtacagaaaacagaggtgcacgatctgaagaaggtagagattttggccctctgatggcaaaaggtctctactggacacctgcgcaggcccaaatgaagagttggtggtttcaacaaatttgccaagtccctgaaaagtaacctaggcagctgttacaatcatgacccacgtgtcagaggtgtcatctgtagctcagcttgtgagagactaagaatatatagctcagctccgtgacctccagaattagtgatctgtaaagccagtaaaaatcaggtaactaaagtgggaaaggggcttcagagagaagtacaaagcgtcggttcacatatacgaggctaggccagccacgtttgttaattatcagagttaagattccagtcttcatggagtcttggagactgaggtgagggttaccttcccaacagtggctctcagtttcttgggagatgcttctgactggcaaaaggtagatatttataactgggatcctctcttttagtaaatgcccggcagatggttggccccggtgagcaagagcagctctcttccttcatcagctctgtcttctttggttccatgcagagactcagttggtgccctcaggtgctcctggcttgcctgaggacacacatttacccagtcataataccgtgggggtgacaggagtgtcacagaaactccagaaaagagtgtatcacccccccagttatgtttcattcctgaaggaatcttacaaggagtcttgggtgttaagatgacatttagatggtgatagagggaccaggagagctggtagtggccatggactcttctctcacttgaggcttgctctacccacaggtgaaggcatgtccaaggccgtgtcttagaatacaaaatcatgggtagaaaacacatggtcaccactgagttctcacctggcatcaagctcttccacccctgatgcagaaaaggacagtgttttcctgtggcctgttgatgaaggaaatgccactgaaaagagtatagtggtttattgggctccaggattctgcacttggtagaagacatagtaatatagtttttcttattctttcaaaaaggaagaaaaggttcagtttagtcaggagttaggagaggacattgacgcatactgacgtgggaaggagcacaccggctgcttagttgtgaattgagtggcccagcctcagaactggaggcattcagtagaaaggacacatgggagtctcctgagccttgtggctggctcttggagacgttgagccttgcccaaagcagggttctcatagatgttgttacagtccaagctgtagtcccttgtgaccgtgggagtgaaccttcaagattgaaaaatggagttcccgagcagcagtttggatctctggatgctgcagtccaggtttccaggagcccagtcattagctcttccttctctgctggctgcagcatgctggctgtgtggctagggagagccagtgtccactagaacacgatcctgagggagcaggctgggtggacaagcacagagacagacttgagctcccggggctctgctcacgccagccagcaggtactgtcctgggtagctggcttcccaggaaggtcaggagaggtccccagcaatggctccttccacactgggctggaaacacagtggtggctgactttgagatgaaggttttagatctagagagaaggccggctgagaacctgcacacactcagactgaaatttctgatggaaaaatttaataaggtgaaatctggcaaatggggtaagctattggagaaatgagatagtcctgattatttcatttctctaaaagacagctttcatccagtggcacgtactaaagcaaaggtttttttcatttgcacaacttatcaagttcaccagcttcatcttgcagatgcagaatgaggcaggtggttcccagtacaggagggggaacaggattgctaataaaagtgctcagcatcaacatggggccatttgaagagggaaatgtctaccacatagcaggggcctagagagcatcttctggtatctgggcgcattcccttcagccaccgtgatggtaccgggccatccacagagcctgcctacgcagctggggctgtatgccatgcttccttaggaaacaaagacagaagcaaaggtgtgttctacaaagcacttcagaattgtccctgggcaaag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]