GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-29 08:20:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_002863572            1229 bp    RNA     linear   VRT 07-FEB-2018
DEFINITION  PREDICTED: Cyanistes caeruleus zinc finger and BTB domain
            containing 21 (ZBTB21), transcript variant X4, misc_RNA.
ACCESSION   XR_002863572
VERSION     XR_002863572.1
DBLINK      BioProject: PRJNA432745
KEYWORDS    RefSeq.
SOURCE      Cyanistes caeruleus (blue tit)
  ORGANISM  Cyanistes caeruleus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Cyanistes.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_019776191.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cyanistes caeruleus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1229
                     /organism="Cyanistes caeruleus"
                     /mol_type="transcribed RNA"
                     /isolate="BT333_1"
                     /db_xref="taxon:156563"
                     /chromosome="1"
                     /map="unlocalized"
                     /sex="male"
                     /tissue_type="blood"
                     /country="Germany: Westerholz"
                     /collection_date="2012-04-01"
                     /collected_by="Jakob Mueller"
     gene            1..1229
                     /gene="ZBTB21"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 12 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:111927401"
     misc_RNA        1..1229
                     /gene="ZBTB21"
                     /product="zinc finger and BTB domain containing 21,
                     transcript variant X4"
                     /db_xref="GeneID:111927401"
ORIGIN      
tctgggatgaccctgctggagcaggaggtgggaccagatgacccacggtggtcccttccagcctgacccatcctgtggttctgtaagcaaagtgtggctttgctggcctgagcactcgtgggctggattattcatcagcaggatgaagcacatttctcagccaggtggggaactcctcagtgctaggctgtgcctgtgcagaaagttggggagttgttgttttacctggtcacagctgtcagaactttactgtaatcctgcatgaagtccaagctgatggtgtgttcagattggatgagatgtatgtaaataaacaggagaaaaacttcaaggagttaccattagacaggaaataattgtggagtgtgtgtgtgctgagtaagctcatcttaataattaaatagcaattgctttagtagctcttccttttttttgtagttggactcccagtggaagtaagaggtaggtaggctgtacttacaagaagagattgtgatgaattacacaatcacagagctttttgtgaatacactgggtatcttgtagttaaattaaaattaatattttagccttagataaattaatgtgaaactagattttttaaaatgtatttttgtacaggacatcctttgatattaaatcaggagtagtaaatacacactgcaggtaaatctagtactgttttatgtgtagatttagtgttctgttctgactttgctcaaactgacaaagagctctgactaaaattttccaccagtgttatgctgatcctcttgaggggaagtttggagcaaatttaagcaactgtttttataaaccttgttagcaaaaaatccccacattatgtggccatctcttgggtgaaaggggatctgacatccctttcttttagatgtgtttcacccatatgctgtagagttgtaatttcttaagaatattttgtttacctgtggaaagtccacccatcctgactggatcatgaccatttcaagagctgtcatttacaggttctcagtagaggcttgcagggagatgtcacaaattagaacctctggagttttcagctgcagatgagaattccttggggctttcaccacttcgcctgattctgctttaatgttcaaggttccaagtgccagggtgacactctgccacgtccatctcatactgagaaccctctggatcagtagaagctggattttactaataaattaggtttcctgagctca
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]