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2024-04-20 10:45:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_002340060            4795 bp    RNA     linear   MAM 13-MAY-2017
DEFINITION  PREDICTED: Sus scrofa uncharacterized LOC110257452 (LOC110257452),
            ncRNA.
ACCESSION   XR_002340060
VERSION     XR_002340060.1
DBLINK      BioProject: PRJNA28993
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_010459.5) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Sus scrofa Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4795
                     /organism="Sus scrofa"
                     /mol_type="transcribed RNA"
                     /isolate="TJ Tabasco"
                     /db_xref="taxon:9823"
                     /chromosome="17"
                     /sex="female"
                     /breed="Duroc"
     gene            1..4795
                     /gene="LOC110257452"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 167 ESTs, 353 long SRA
                     reads, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:110257452"
     ncRNA           1..4795
                     /ncRNA_class="lncRNA"
                     /gene="LOC110257452"
                     /product="uncharacterized LOC110257452"
                     /db_xref="GeneID:110257452"
ORIGIN      
ggaacgtttccgtgccggaaccttggctcgaggggcccggagcggtgcgaaggcacttccggtgccccttctcgcttgccagtgaagagaactgccaagtcagttccggcagagagcgcggtgagaagcggatcgcggccttctgtcccggggccctccgggccctctggcctcggccagcggtgaactggggggccctgggacaggcctgaactgtgtcctgcagagctccagagtcctcgcggccgtccatggcccaggccttggagtagcagcgaacctctcccccacccccacctccgcgaccaaatggcggcggaccccgcgagcccaggcccagccgatcgccgggtctcttggcccagcgctgcagggcttaggcgaagcctctgccaaatcgcctttgggagtccagcgtggcagggcgagaagaatggcggccactcgaacgccatggagagccgttagagcctcgagggcccgagaaggctgccacccttgggccttggagccgtgcggatttgggacctgtggtggccgctctgtcccggttggacgagacctcacctcatccggtaaacgacggacaaaggcctttacgggcccggaagaaaaggaatgtcttctggaaatgactttgagatggaattgtttgaccacctctgaagtgacatctggagagacagagatccacgtttgttcagtgggttagaggacatggagtggaagatttcgaggaagaagaaggttctgtgccagactcgtcatacttagaagacatttgcatattataaccattgttttgtgtgtgcattttattcctcacttctatatatagttgacaataagtactttttggaaatatctaggctttctagattttctgaagtgcctgacatatgttaaaagtagaggtagtaaaaagacatctttttgtgtatgatagaaatatctttttgttaaaactcatatgaaatattgtttatttggggggaggggggttggccaaaccacctctttgaatagtgcattgtgtttgtgcactggttcaaggtcgggggaggagaaggaagtgcaaagagctctttgctagtgtttatagcaaggcaaggttaaccattgttctttttacgtgcatttcgtttcactttgtgtgtatatagtgtacataacggacaaatgagtcctaatttacaacatctggtccttctagatgttaaagaggttgccagtgtatgatagaaatagagatagtaaactaataccatcctatacattttgtgtcctgaaaatgtgagcattatagccctctgggttggtagaggggggagagaagagaaggggggtggtcttatgctagaatgctcacatttggaagacactttcagattataactgttacatgtcgcagtttattgagactgctctgtatatagtggacaaattaagtccttatttgaaacatctagtccacctagatgtttagaagtgcccgacgtatgttaaatgtagaggtagtaaaatatcactttgtaaatagcttttagctaaaattcataggaaatattgtcttttgaaaatggaattgttaaaccacctctgtgaccagtagtttggagtaggtgagaaggaaagaattgcaaaaggtaatatgctagtgtgtttggacgttttcagacaaaaccattttttgtatgttaggtgcattttgcttttctgtgtatatagtgtatataatggacaaatgagtcctaattttgcaacatctagtctctagatgttaaagaggttgccagtgtatgacaaaatagtaagatttacatattttttacactttgtgttgaaatttataggaaagcttgtcttctgtagatgacttttggatatgaatttgttcattcacctctaagcattacacattgcctgtacttgtccactgaattcatggtggagagaaggaagtgagggagggaatgcttcaggccaaaatggtcatatttagaagatacctcagattataaccattgttacacgtgtgcaattttatttaacagtgctgtgtacttagtgaacaagtaagttcttatatgaaatatctagtcttgctgggtatttagaagtgcttgatgtatttaaaagtagtagtagtaaaataatgcttcttgtaaatagcttttaaaaacatgggaaatgctgtctttggaaatggaattgttaaacctcctctgaccagtatactctgctcattcattgggttgatggaagtgggagggaagattgcaaaaacatgttttgctagtgtgtactaaaaaatttcaccttattggttgctctatgttacatgcattttgtttaactttactgtatatattatgtatatactggacaaatgggttccaattttataatatctagtctctagatattaaaaagaggttgccaatgtatgacaaaagtagagttagtaaactaacacattttgtacacttgtgttaaattccattgaaaggctgtcttctgaaaaggacctttggaaataaaattgtaaatcacatctaagtgacacatgtgcctgaactcagccactgttggatggacagtgggaaggaagagttaggagcaatgaagcattctaataagctagaatgtttctgtgtagaagacactttcatatataaccatttttacatgtgtgtggtttattcaacactactgtgtatatatagtggacaaacttaagtccttatttgaaacatctagtctttctagatgtttagaagtgcacaaagtatgttaaaagtagaggtagtgaaataacattttgtagatatctttttgttaaaattcatatgaaatattgccttttagaaatggaataatcaaaccacctctttgagcagtgcacattattttatttgtgctggttcaaggaggaagaaaaaagtacaaagggctttataccaatatgtttatagttaggagagattaaccatcgtcctgtatgtctgtgttttgctttacttagttgtgtatatagtgtacataaaggacagatgtccaaatttacatctagtcttcctagatgttaaagaggttgccaatgtatgacaaaagtagttagaaaataaatacattgtgaatactttgttaaaattcatacgaaaaattgttctgaaagcaactggaggagatgaaattgttagaatcccctctaagcatttcagatgctttattacacttgcttactaggttgatagagatgagaaggggaagggttctaggcccgtgttcctgtttagaagacactttgagattatagcctttgtgtgcagtttattcaatactacatgtatgtatagtaaactaaaatccttatttgaaacatctagtctttctagatgtttaaaagtgtacaacatatgctaaaagtagataattaacaccttttaagatttttttctgttaattcataggaatggtcatatttggggaatgggattgttaaacttgagccttggagagtatgctgactgatgactggggtggtgggggttgggggggacagggaaggaagctcagagaagggttctgtgctcatgagtctttagaaagcttcagattttctaaccattgttctgtttgtgtgtttgagttaatattgctgtgtattaaagaataaacaagtcccagtgtccaaagtatattgaaagtagaagtagtaaaataattcctttataaatgcccttttgtgggtttttaggaagggctatgacttctgggagtgtctatgttaatccaccttttgtagctagatgtagtcctgtagttagtcactgaaatgctggaagagggttaagaggaagggtgaagggaagggctcttggctattatctccatatctagacagttttagtttataaccataggtctatatgtgcatttttgtaaagtttctgtttattgtggacaaggttcattctttatcttgcaacatctatgtcccaggataacatatgataaaaagtagagttagtgagttaaccaatttgtaaataaatatctttgttacaatgatataaaacagcatcttggacatgaattgttaaagtctcagaaatgtatgtcaggacttgttcactaggttggcagcagaggggcagaaggaaagtataaagggagggttgtatgcgaatgtgttcatatttatattttggtgataaccattgatgtgggtgcatcttttggctgtaatataagcaattcagtggaaacatacctccttgctaatattttaatagtttggataattagtcctcttagaggcattatactttatgtactctgttgctttatgtgtcatttttaattgaacataagggaatgtagtattttaatcataactctaccaatatctttatcttgaagcctgttgctatttttgtcttttatgtaattttatcgctaagaaaggcaggattacattttttttccttccagatcgagttggtgtagtatattcttggttatcaaaataaaatactcatatagctttgggactttgaaatggtaaatattcatgatgtgtgaaaaagcatgatacataactatgatcttaattacataaaaatggatgcttcattgtgtagatacacaaacgaaatctagaaggacatatcaacctgtaaactgcttgattatggatgactttgttttttgcttcctatttgcttgtgtttttcagtttcctattatgcacatgttaacttttaagaaataaattttacttaaaaaagcc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]