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2024-04-19 10:41:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_002057560            2462 bp    RNA     linear   VRT 26-JUL-2018
DEFINITION  PREDICTED: Oreochromis niloticus uncharacterized LOC102079679
            (LOC102079679), ncRNA.
ACCESSION   XR_002057560
VERSION     XR_002057560.1
DBLINK      BioProject: PRJNA354796
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Oreochromis niloticus (Nile tilapia)
  ORGANISM  Oreochromis niloticus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini;
            Oreochromis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_031984.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oreochromis niloticus Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Oreochromis niloticus"
                     /mol_type="transcribed RNA"
                     /isolate="F11D_XX"
                     /db_xref="taxon:8128"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /linkage_group="LG20"
     gene            1..2462
                     /gene="LOC102079679"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 12 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102079679"
     ncRNA           1..2462
                     /ncRNA_class="lncRNA"
                     /gene="LOC102079679"
                     /product="uncharacterized LOC102079679"
                     /db_xref="GeneID:102079679"
ORIGIN      
gtagtctgtatgtgaaggtgtgctgcaaaatgattatgctctcctgacaagaggctttacagacggcaacaacggcaaaagttaggatgacattacgaaaggtctcgttttgcatcgttattctcctagtcatatggaactgtcttaagtatgagggacacagagagtttctaaatggcttctttgaggagttaatgagtgcagaagaatccagcattcatctaagaaaaaaaagagaaacttcatcaaattccactgagtatgagcttcaagctgttataagcgtctcaaatctggaacaattccagtcgatactgaacaccctcagttttcctttatcgatcaacgccactggtgaaattacaagcattaatacaacaacagtgtgttcaccaaaaaaaactgcaaacataactgaataccagtgcacatgtgaggagagctttgcttggtcatataacaaatgcattaactatgaggcctgtgatgccatcgttggtgatacatgtggatgcattaatggacttccagcagatgggcaatattgccagttaaaaaccagcaacccagtgccagtggagtatgatataaactttaacttgctcttgccagtatccagtctgcccccaaatttcattgatctgttcagagactatgtgggaaatttgtcattcccccaaaccttcactcagtctttaataatagaagacttgaacttcaccacatggtgctatccaaactctaccggaggaatgcagtgtcagtgtgaggaccactttggttggtcatgtgacaagtgtggcctatacggtgcatgcagtaatgttacctcacaaacctgtgggtgcatcaaaaagcttcctcctggtggagagttctgtgaaccaatcacaagtattcctccatgtccaactccaactcctgagccagtggaaatagtcgttgacattgaaattccagtatccagtgtgctcccaaatttcaatgatgaaataagacacgctttgcaaaatttgtccttcccatatctcatcactcagtctttaataatagaggacctaaatttcaccacatggtgctatccaaactccactggaggactccagtgtcagtgtgaggaccagtttgcttggtcatgtaacaagtgtgatgagtacggcgcatgcagtaatgtcacctcccaaacctgtgattgcataaagggatttcctctgagtggggagttctgtcaaccaatcacaggcgtcgctccttgcccaacaccaactcctgcaccagtggactttgatatagaccttgaactgcacatcccagcatctagtgtgccccaaaatttcagtgttgtgctcagaaatattctgagaaatttctccttccccaaaatcatcactgggtctttaacactgaaagacttgaacttcaccacatggtgctatccaaactccactggaggacaccagtgtcagtgtgaagaccagtttgcttggtcatgtggcaagtgtgataagtacggcgcatgcagtaatgtcacctcacaaacctgtgattgcataaagggatttcctctgagtggggagttctgtcaaccaatcacaggcgtcgctccttgcccaacaccacctcctgcaccagtggactttgatatagaccttgaactgcacatcccagcatctagtgtgccccaaaatttcagtgttgtgctcagaaatattctgagaaatttctccttccccaaaatcatcactgggtctttaacactgaaagacttgaacttcaccacatggtgctatccaaactccactggaggacaccagtgtcagtgtgaagaccagtttgcttggtcatgtggcaagtgtgataagtacggcgcatgcagtaatgtcacctcacaaacctgtgattgcataaagggatttcctctgagtggggagttctgtcaaccaatcacaggcgtcgctccttgcccaacaccacctcctgcaccagtggactttgatatagaccttgaactgcacatcccagcatctagtgtgccccaaaatttcagtgttgtgctcagaaatattctgagaaatttctccttccccaaaatcatcactgggtctttaacactgaaagacttgaacttcaccacatggtgctatccaaactccactggaggacaccagtgtcagtgtgaagaccagtttgcttggtcatgtggcaagtgtgataagtacggcgcatgcagtaatgtcacctcacaaacctgtgattgcataaagggatttcctctgagtggggagttctgtcaaccaatcacaggcgtcgctccttgcccaacaccacctcctgcaccagtggactttgatatagaccttgaactgcacatcccagcatctagtgtgccccaaaatttcagtgttgtgctcagaaatattctgagaaatttctccttccccaaatcatcactgggtctttaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]