2024-05-09 08:40:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_001458870 4812 bp RNA linear MAM 22-NOV-2019 DEFINITION PREDICTED: Vicugna pacos uncharacterized LOC107033401 (LOC107033401), ncRNA. ACCESSION XR_001458870 VERSION XR_001458870.2 DBLINK BioProject: PRJNA221631 KEYWORDS RefSeq. SOURCE Vicugna pacos (alpaca) ORGANISM Vicugna pacos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021964196.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Nov 22, 2019 this sequence version replaced XR_001458870.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Vicugna pacos Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4812 /organism="Vicugna pacos" /mol_type="transcribed RNA" /isolate="Carlotta (AHFN-0088)" /db_xref="taxon:30538" /chromosome="19" /map="unlocalized" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..4812 /gene="LOC107033401" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns" /db_xref="GeneID:107033401" ncRNA 1..4812 /ncRNA_class="lncRNA" /gene="LOC107033401" /product="uncharacterized LOC107033401" /db_xref="GeneID:107033401" ORIGIN
tccggtgcccctcctctctgactagcgaagagaactgccaagtcagttccggcagagcgcggtgagaaacggactgcggctatctctcccgggaccctccaggccctccggcctcaggccggagggtgagctggggggcccggggacaggctgcgggctgtgtcctgcagagccccagagccctcgctgcggccgcccacgggcggggttcagcccttgaagcagcagcgaccctctccccaacccccacctccgagacctaatggcggcggccccttggagcccggacctcgccgacggcgcggtctcttggctgaacgctgcagagcttaggcgaagcctccgccaagctgccgaggacgtggcgcctttgggcgtcgggcgtggcagggcgagaagaatggcggccactggaacgctgcggagggccgttagatcctcgagggcccaagaaggcggttctctatggacaccagcttggccagccttaggccttggggctgcgcagatccgggacctggggtgaccgctcattcccaggcggacgagacctcacctcgtctgggcaacgacggacaaaggccttaacggacccggaagaaatgtcttcaggaaatgacttttttgaaatggaattgtttgacctcctctagaagcgacatcaggagcgacacaggtccacgtttgttctgtgagttagaggacatggagtggaaaaccgtgaagaggaagaaaagaaggttctatgccagactggtcatacttagaagacacttccctatgataaccattgtcttgtgtctgcattttattcctcactactgtatatacagttgacaatgctaagtacttttttgaaatatctagtcttcctagatgttctgaagtgcctgatatatattaaaagtagaggtagtaaaagcattttgtaaatatctttttgttaaaattcacatgaaatattgtttattttggggggggattggccacaccacctctttgaacagtacacactgcgtttgtgcactggttcaaggtagggggaaggagaaggaagtgcaaagagctctgtgccagtgtgttaatagtgacacaaggttaaccattgtcctttttatattcatgcattttgtttcactttgctgtgtatatagtgtatataatggacaaatgagtcctaatttacaacatctagtctttctagatgttaaagaggttgccagtgtatgacaaaaatagagttagtaaactaatacatttttgtacattttgtgttaaaatttctaggaaagactgtcttctgaaaatttgagcattatagtcctctgagttggtggagagagggagggaagggggttggtcttaggctataatgctcatatttcaaagacacttgcagattataactgttacatgtgtgcagtttatttaagactgctctgtatatagtggacaaattaagtccttatttgaaacatctagtccatctagatgtttagaagtgcccgacgtatgttaaatgtagaggtagtaaaatatcgctttgtaaatatctttttgctaaaatttataagaaattctgtgttttgggaatggaatagttaaaccacctctgtgagcagtatattattgtctatacttgttcagtggttcggaggtggtgggagggagggaaagaattgcaaaaggtaatatgctagtttgtacctggacttttacagataaaattattttttgtatgttatgtgcattttgttttgctgtgtaaatagtgtatataatggacatatgagtcctaattttgcaacatctagtctctagatgttaaagaggttgccagtgtatgaaaagtagtaaaattagcacattttgtacactttgtgttgaaattcataggaaagctcatcttctgtaaatgacttttgggtgtgaatttgttcagctacctgtaagcattacacatgcctatacttgtccactgcatggtggtggagagaaggaagtgagggaggaactggttcaggccaaatggtcatatttagaagatacctcagcttacaaccattgttaggtgtgtgcaattttatttaacagtgctgtgtacatagtggatataagttcttatatgaaatatctagtctttctagatacttagaagttcttgatgtatttaaaaagtagtattagtagaatagtgcttcttgtacatagcttttaaaaacttgggaaatactgtctttggaaatggaattgttaaacctctctgaacagcatactctgcttgttcactggcttgagggaggtggaagggaagattgcaaaagatgttttgctagtgtgtactagaaattttgaacttacctattgctttatttgttacatgcattgcatttaactttactgtatatattatgtatatactggacaaatgggtcccaattttataatatctagtctctagatgttaaagaggttgacaatgtatgacaaaagtagagttagtaaactaacacattttgtacactttgtgttaaaattcttcgaaaggctgtcttctgaaaaggacttttgaaaatgaagttgtaaatcgcatctaagtgacacatgtgcctgtactagcccattgctggatgagtgatggaaggagttgggagaaatgaagggttctagactagaatgttcctacagagaagacactttcagatataaccattgttacatgtgtgtagtttattcaacactactgtgtatatagtggacaaactcaagtccttatttgaaacatctagtctttctagatgtttagaagtgcacaaagtatgttaaaagtagaggtagtgaaataacattttgtagatacccttttgttaaaattcatatataatactgtcttttagaaatggaatgatcaaatgatcacctctctgagcagtacacgttattttatttgtgctggtttgaggaggaagaagtgcaaagggctttataccagtacgtttgtagttaggcaagattaaccattgtcccatacgtatgtctgcattttgttttacttagctgtgtatatagtgtacataaaggacaaacgtcccaacttacatctagtcttcctagatgttaaagaggttgccagtgtatgacagaagtagagttagtaaacaaatacattgtgcatactttgtgttcaaattcataggaaaggctgttctggaagatttgatattgttaacatcccctctgagcattacagatgcttattacacttgcccgctgggttgatagacatgagaaggggaagggttctaggccagagtgtcctgtttagacgacactgagattatagcctttatagcctttgtttgctactatgtgtatgtatagcagacaaacttaaatccttatctaaaatacttgttctctctagatgtttaaaagtgcacaacataagttaaaagtagagttaaggtaacacctttaagtatttttttcctgttaatccataggaatggttgtatttggggaatggaattgttaaacctgagtcttggagagtatgctgactgttcactggggggttgggggggaggggcagggaaggaagtgcagagagaaggttctgtgcccatgagtctttatagacaagttgagattgtctaatgttctgtctgtgttttagttaatattgctgtatattaaagaataaacacatcctaatgcctgaagtatattaaagtagaggtagtaaaataatccctttataaatgcccttttgttgttttttaggaagggctatgtcttctgggagtgtctatgttaatccacctcttggagctaaatgtagtcctgtacttagtcgctgaaatgctggaggagggtaagaggaagggtgaagggaagggctcttggctgataacctccatatctagaaaacagttttaggttataaccataggtctatgtgtgtgcatttttgtaaagtacctatgtgtattgtgaacaaggttcattctttactttgcaacatctaagctttttagatgtcatgaggtgacaacgtataataaaaagtagagctagtgaattaaccaatttgtaaatatctttgatgtaactgataaaaaagcatcttggacatggaacttaaactgtctctgagaaatgtatgtgagaacttgttaggggggcagaaagagtattaaagggaggggtgtatgcagatgtgtccatatttggatgataaccgttgatttgtgtgcatctctttggctgtactataagaatacattgttaagcaattcagtggaaacatacctccttgctaatattttaatagtatagattgggtaatgaaccctcttagaagcattatacttcatgtactctgttgctttatgtctcatttttaattgcattaggggaatatagtactttaatcataactgccaatatctttagaggcctgttgccatttcttatttttatgaaatttttgttgccaagaaaggattacacttttccttccagattgagttggtgtagtgtattggttatcaaaatactcatagttttgggactctggaatggtaaatattcataatgtgtgaaaaagcatgatgcctaattgtatgatcttaattacataaaaatggatgcttagttatgtagatacacaaatgagacctaggaggacacatcaaactgtaaactgcttgtgattatggattactttgttttttgcttcttgtgttttttggtttcctattatgcacatgttagctttcaagaaataaatgttattttaaaagccacgaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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