2024-04-29 04:30:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_707839 1254 bp mRNA linear PLN 18-APR-2022 DEFINITION Candida albicans SC5314 Lys22p (LYS22), partial mRNA. ACCESSION XM_707839 VERSION XM_707839.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1254) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1254) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1254) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1254) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1254) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1254) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032090). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1254 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="2" /haplotype="A" /country="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1254 /gene="LYS22" /locus_tag="CAALFM_C204460WA" /db_xref="GeneID:3645466" CDS 1..1254 /gene="LYS22" /locus_tag="CAALFM_C204460WA" /note="Homocitrate synthase, minor isoform; repressed by nitric oxide and by hypoxia; protein level decreases in stationary phase cultures; induced by ketoconazole, Spider biofilm induced; flow model biofilm repressed" /codon_start=1 /transl_table=12 /product="Lys22p" /protein_id="XP_712932.1" /db_xref="CGD:CAL0000201759" /db_xref="GeneID:3645466" /translation="
MSVASNPYGPNPSDFLSNVNKFEVIESTLREGEQFANAFFTTEKKIEIAKALDDFGVDYIELTSPVASEQSRRDCEAICKLGLKAKILTHIRCHMDDARVAVETGVDGVDVVIGTSQFLRQYSHGKDMNYIAQSAIEVIEFVKSKGIEIRFSSEDSFRSDIVDLLNIYRTVDKIGVNRVGIADTVGCANPRQVYELVKTLKSVVSCDIECHFHNDTGCAIANAYTALEAGAKLIDVSVLGIGERNGITPLGALMARMITADRDYVLSKYKLHKLRDLENLVADAVQINIPFNNPITGFCAFTHKAGIHAKAILANPSTYEILNPNDFGLTRYIHFANRLTGWNAIKSRVDQLNLHLTDDQVKEVTNKIKKLGDVRQLNIDDVDSIIKDFHAEQSTTNTPLLKPVEDDEGPEIKKQKV"
misc_feature 64..849 /gene="LYS22" /locus_tag="CAALFM_C204460WA" /note="Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain; Region: DRE_TIM_HCS; cd07948" /db_xref="CDD:163685" misc_feature order(88..93,100..102,181..183,268..270,274..276,460..462, 544..546,631..633,637..639) /gene="LYS22" /locus_tag="CAALFM_C204460WA" /note="active site" /db_xref="CDD:163685" misc_feature order(88..93,181..183) /gene="LYS22" /locus_tag="CAALFM_C204460WA" /note="catalytic residues [active]" /db_xref="CDD:163685" misc_feature order(91..93,544..546,631..633,637..639) /gene="LYS22" /locus_tag="CAALFM_C204460WA" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163685" ORIGIN
atgtctgttgcttctaatccatatggtccaaatccatctgatttcttatctaatgtgaataaatttgaagtcattgaatcaactttaagagaaggtgaacaatttgccaatgcctttttcaccactgaaaaaaaaattgaaattgctaaagctttagatgattttggagttgattatattgaattgacttcaccagtagcatctgaacaatcaagaagagattgtgaagccatttgtaaattaggtttaaaagctaaaatattgactcatattagatgtcatatggatgatgcccgtgttgccgttgaaactggggttgatggggttgatgtggttattggaacttcacaatttttaagacaatattctcatggtaaagatatgaattatattgctcaaagtgctattgaagtcattgaatttgttaaatctaaaggtattgaaattcgttttagttctgaagattcttttagatcagatattgttgatttattaaacatttatcgtactgttgataaaatcggagtgaatagagttggtattgccgatactgttggttgtgctaatccaagacaagtttatgaattggtcaaaactttgaaatcagtggtttcttgtgatattgaatgtcatttccataacgatactggttgtgccattgctaatgcttatactgccttggaagccggtgctaaattaattgatgtttctgtgttgggtattggtgaaaggaatggtattactccattgggggcattaatggcaagaatgattactgctgatcgtgattatgtgttatctaaatataaattacacaaattgagagatttagaaaatttggttgctgatgccgtacaaattaatattccattcaataatccaattactggattctgtgcttttactcataaagctggtattcatgctaaagccatcttggccaatccatcaacatatgaaattttaaatccaaatgatttcggtttaaccagatatattcactttgctaatagattgactggttggaatgccattaaatcaagagttgatcaattgaatttacatttgactgatgatcaagttaaagaagttacgaataaaattaaaaaattgggtgatgttagacaattgaacattgatgatgtcgattcaattattaaagatttccatgctgaacaaagcactactaatactcctcttttaaaaccagtagaggatgatgaaggtccagaaattaaaaaacaaaaagtatag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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