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2024-05-03 15:16:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_663364               1335 bp    mRNA    linear   INV 17-MAY-2008
DEFINITION  Cryptosporidium hominis TU502 cinnamyl-alcohol dehydrogenase (EC
            1.1.1.195) (Chro.50271) partial mRNA.
ACCESSION   XM_663364
VERSION     XM_663364.1
KEYWORDS    RefSeq.
SOURCE      Cryptosporidium hominis TU502
  ORGANISM  Cryptosporidium hominis TU502
            Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia;
            Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium.
REFERENCE   1  (bases 1 to 1335)
  AUTHORS   Xu,P., Widmer,G., Wang,Y., Ozaki,L.S., Alves,J.M., Serrano,M.G.,
            Puiu,D., Manque,P., Akiyoshi,D., Mackey,A.J., Pearson,W.R.,
            Dear,P.H., Bankier,A.T., Peterson,D.L., Abrahamsen,M.S., Kapur,V.,
            Tzipori,S. and Buck,G.A.
  TITLE     The genome of Cryptosporidium hominis TU502
  JOURNAL   Nature 431 (7012), 1107-1112 (2004)
   PUBMED   15510150
REFERENCE   2  (bases 1 to 1335)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2005) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1335)
  AUTHORS   Xu,P., Widmer,G., Wang,Y., Ozaki,L.S., Alves,J.M., Serrano,M.G.,
            Puiu,D., Manque,P., Akiyoshi,D., Mackey,A.J., Pearson,W.R.,
            Dear,P.H., Bankier,A.T., Peterson,D.L., Abrahamsen,M.S., Kapur,V.,
            Tzipori,S. and Buck,G.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUN-2004) Center for the Study of Biological
            Complexity, Virginia Commonwealth University, Trani Center for Life
            Sciences, 1000 W Cary St, Richmond, VA 23298, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_667459).
            COMPLETENESS: not full length.
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Cryptosporidium hominis TU502"
                     /mol_type="mRNA"
                     /strain="TU502"
                     /db_xref="taxon:353151"
                     /chromosome="5"
     gene            1..1335
                     /locus_tag="Chro.50271"
                     /db_xref="GeneID:3414446"
     CDS             1..1335
                     /locus_tag="Chro.50271"
                     /EC_number="1.1.1.195"
                     /codon_start=1
                     /product="cinnamyl-alcohol dehydrogenase"
                     /protein_id="XP_668456.1"
                     /db_xref="GeneID:3414446"
                     /translation="
MTENQGYKQEILSSSIPNMSKENKNEKINATFDVNQDISTKPIIEKIPLHTEAEYNCCEDVKVKHNVDYPIREHNGVNNSHNISEYAVQGEVYSCMEPLVYDKNNNNTIVLVTGATGFIASHIVERLLLRGYKVRATTRSKNSQNSDSLLNFHFADENLMLYEADLLNSECWKELVKGCRIVIHCASPYKMDCKDPYEIIDPAIIGTKNVIHACCMCDDVKTVVLTSSIAAVVGAYKDGKVYSEIDWNEDCNPLIHPYLYSKVEAEKIAYKVVDECRKSLNLIVVNPGMVIGPSYRSDVNQSVQWIYNMITGRMPLTVDLQTGWVDVRDVAEIHIRLFESGKFSGRFICIEGMYTFLDISRMIKHISPQLNPPNHSLPNFIAKIILPLFTSKNEKDFLKTSLGKRILLSNGRLLSHLPNYKFLSTFESVRDTCNDLTNKFDIKK"
     misc_feature    328..1197
                     /locus_tag="Chro.50271"
                     /note="aldehyde reductase, extended (e) SDRs; Region:
                     AR_SDR_e; cd05227"
                     /db_xref="CDD:187538"
     misc_feature    order(340..342,346..357,415..417,499..501,553..567,
                     676..684,772..774,784..786,859..870,901..906)
                     /locus_tag="Chro.50271"
                     /note="NADP binding site [chemical binding]; other site"
                     /db_xref="CDD:187538"
     misc_feature    order(565..567,571..573,682..690,697..699,772..774,
                     859..867,913..915,949..951,967..969,1165..1167)
                     /locus_tag="Chro.50271"
                     /note="putative substrate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187538"
     misc_feature    order(682..684,772..774,784..786)
                     /locus_tag="Chro.50271"
                     /note="active site"
                     /db_xref="CDD:187538"
ORIGIN      
atgacagaaaatcaaggatataagcaagaaattttgagtagtagtattccaaatatgtctaaagaaaataaaaatgaaaagataaacgctacttttgacgtaaatcaagatattagcacaaaaccaattattgaaaaaattccattacacacagaagctgaatacaattgctgtgaagatgttaaagttaaacataatgttgactacccaatcagagagcataatggcgtaaataactctcataatatttcagagtatgcagttcaaggagaagtttattcttgcatggaaccattggtttacgataaaaacaacaacaacactattgttcttgttactggagcaacaggatttattgcatcacatattgtggagcgattgttgcttagaggatataaagttcgtgcaacaacaagatcgaaaaatagccaaaattctgactctttattaaatttccattttgctgatgagaatttaatgctttatgaagcagatttattaaatagtgaatgctggaaagagttggttaagggatgtagaattgtgattcattgcgcgtctccatataaaatggattgtaaggatccatatgaaattatagatcctgcaattattggaacaaaaaatgttattcatgcatgctgtatgtgtgatgatgtaaagactgttgttctaacttcatcaattgccgcggttgtaggtgcttataaagatggaaaagtatattctgagattgattggaatgaagattgtaatcctttgatacacccatatttgtacagcaaggttgaagcagagaaaatagcttataaggtagtggatgaatgccgtaagtcactaaatctaatagttgtgaacccgggtatggtaattggtccttcttatagaagtgatgtaaatcaatcggttcaatggatttacaatatgattaccggtagaatgccactgactgtagacttacagacagggtgggttgatgtaagagatgtcgcagaaatacatattaggcttttcgagtctggcaaattttccgggagatttatttgtatcgaaggaatgtatacatttctcgatatttctagaatgataaaacacatctcacctcagctaaacccacctaatcattcccttcctaatttcatagccaaaattattcttcccttattcacttcaaaaaatgagaaagattttttgaaaacatcattaggaaaaagaatattacttagcaatggtaggttattatcgcatctacctaattacaaatttttgtcgacattcgaatcggtaagagatacatgtaatgatttaacaaacaagtttgacatcaagaaataa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]