2024-05-03 15:16:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_663364 1335 bp mRNA linear INV 17-MAY-2008 DEFINITION Cryptosporidium hominis TU502 cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (Chro.50271) partial mRNA. ACCESSION XM_663364 VERSION XM_663364.1 KEYWORDS RefSeq. SOURCE Cryptosporidium hominis TU502 ORGANISM Cryptosporidium hominis TU502 Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium. REFERENCE 1 (bases 1 to 1335) AUTHORS Xu,P., Widmer,G., Wang,Y., Ozaki,L.S., Alves,J.M., Serrano,M.G., Puiu,D., Manque,P., Akiyoshi,D., Mackey,A.J., Pearson,W.R., Dear,P.H., Bankier,A.T., Peterson,D.L., Abrahamsen,M.S., Kapur,V., Tzipori,S. and Buck,G.A. TITLE The genome of Cryptosporidium hominis TU502 JOURNAL Nature 431 (7012), 1107-1112 (2004) PUBMED 15510150 REFERENCE 2 (bases 1 to 1335) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-JUN-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1335) AUTHORS Xu,P., Widmer,G., Wang,Y., Ozaki,L.S., Alves,J.M., Serrano,M.G., Puiu,D., Manque,P., Akiyoshi,D., Mackey,A.J., Pearson,W.R., Dear,P.H., Bankier,A.T., Peterson,D.L., Abrahamsen,M.S., Kapur,V., Tzipori,S. and Buck,G.A. TITLE Direct Submission JOURNAL Submitted (08-JUN-2004) Center for the Study of Biological Complexity, Virginia Commonwealth University, Trani Center for Life Sciences, 1000 W Cary St, Richmond, VA 23298, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_667459). COMPLETENESS: not full length. FEATURES Location/Qualifiers source 1..1335 /organism="Cryptosporidium hominis TU502" /mol_type="mRNA" /strain="TU502" /db_xref="taxon:353151" /chromosome="5" gene 1..1335 /locus_tag="Chro.50271" /db_xref="GeneID:3414446" CDS 1..1335 /locus_tag="Chro.50271" /EC_number="1.1.1.195" /codon_start=1 /product="cinnamyl-alcohol dehydrogenase" /protein_id="XP_668456.1" /db_xref="GeneID:3414446" /translation="
MTENQGYKQEILSSSIPNMSKENKNEKINATFDVNQDISTKPIIEKIPLHTEAEYNCCEDVKVKHNVDYPIREHNGVNNSHNISEYAVQGEVYSCMEPLVYDKNNNNTIVLVTGATGFIASHIVERLLLRGYKVRATTRSKNSQNSDSLLNFHFADENLMLYEADLLNSECWKELVKGCRIVIHCASPYKMDCKDPYEIIDPAIIGTKNVIHACCMCDDVKTVVLTSSIAAVVGAYKDGKVYSEIDWNEDCNPLIHPYLYSKVEAEKIAYKVVDECRKSLNLIVVNPGMVIGPSYRSDVNQSVQWIYNMITGRMPLTVDLQTGWVDVRDVAEIHIRLFESGKFSGRFICIEGMYTFLDISRMIKHISPQLNPPNHSLPNFIAKIILPLFTSKNEKDFLKTSLGKRILLSNGRLLSHLPNYKFLSTFESVRDTCNDLTNKFDIKK"
misc_feature 328..1197 /locus_tag="Chro.50271" /note="aldehyde reductase, extended (e) SDRs; Region: AR_SDR_e; cd05227" /db_xref="CDD:187538" misc_feature order(340..342,346..357,415..417,499..501,553..567, 676..684,772..774,784..786,859..870,901..906) /locus_tag="Chro.50271" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187538" misc_feature order(565..567,571..573,682..690,697..699,772..774, 859..867,913..915,949..951,967..969,1165..1167) /locus_tag="Chro.50271" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187538" misc_feature order(682..684,772..774,784..786) /locus_tag="Chro.50271" /note="active site" /db_xref="CDD:187538" ORIGIN
atgacagaaaatcaaggatataagcaagaaattttgagtagtagtattccaaatatgtctaaagaaaataaaaatgaaaagataaacgctacttttgacgtaaatcaagatattagcacaaaaccaattattgaaaaaattccattacacacagaagctgaatacaattgctgtgaagatgttaaagttaaacataatgttgactacccaatcagagagcataatggcgtaaataactctcataatatttcagagtatgcagttcaaggagaagtttattcttgcatggaaccattggtttacgataaaaacaacaacaacactattgttcttgttactggagcaacaggatttattgcatcacatattgtggagcgattgttgcttagaggatataaagttcgtgcaacaacaagatcgaaaaatagccaaaattctgactctttattaaatttccattttgctgatgagaatttaatgctttatgaagcagatttattaaatagtgaatgctggaaagagttggttaagggatgtagaattgtgattcattgcgcgtctccatataaaatggattgtaaggatccatatgaaattatagatcctgcaattattggaacaaaaaatgttattcatgcatgctgtatgtgtgatgatgtaaagactgttgttctaacttcatcaattgccgcggttgtaggtgcttataaagatggaaaagtatattctgagattgattggaatgaagattgtaatcctttgatacacccatatttgtacagcaaggttgaagcagagaaaatagcttataaggtagtggatgaatgccgtaagtcactaaatctaatagttgtgaacccgggtatggtaattggtccttcttatagaagtgatgtaaatcaatcggttcaatggatttacaatatgattaccggtagaatgccactgactgtagacttacagacagggtgggttgatgtaagagatgtcgcagaaatacatattaggcttttcgagtctggcaaattttccgggagatttatttgtatcgaaggaatgtatacatttctcgatatttctagaatgataaaacacatctcacctcagctaaacccacctaatcattcccttcctaatttcatagccaaaattattcttcccttattcacttcaaaaaatgagaaagattttttgaaaacatcattaggaaaaagaatattacttagcaatggtaggttattatcgcatctacctaattacaaatttttgtcgacattcgaatcggtaagagatacatgtaatgatttaacaaacaagtttgacatcaagaaataa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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