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2024-05-03 17:46:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_636099                900 bp    mRNA    linear   INV 29-JAN-2010
DEFINITION  Dictyostelium discoideum AX4 hypothetical protein (DDB_G0280465)
            mRNA, complete cds.
ACCESSION   XM_636099
VERSION     XM_636099.1
KEYWORDS    RefSeq.
SOURCE      Dictyostelium discoideum AX4
  ORGANISM  Dictyostelium discoideum AX4
            Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia;
            Dictyosteliales; Dictyosteliaceae; Dictyostelium.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Eichinger,L., Pachebat,J.A., Glockner,G., Rajandream,M.A.,
            Sucgang,R., Berriman,M., Song,J., Olsen,R., Szafranski,K., Xu,Q.,
            Tunggal,B., Kummerfeld,S., Madera,M., Konfortov,B.A., Rivero,F.,
            Bankier,A.T., Lehmann,R., Hamlin,N., Davies,R., Gaudet,P., Fey,P.,
            Pilcher,K., Chen,G., Saunders,D., Sodergren,E., Davis,P.,
            Kerhornou,A., Nie,X., Hall,N., Anjard,C., Hemphill,L., Bason,N.,
            Farbrother,P., Desany,B., Just,E., Morio,T., Rost,R., Churcher,C.,
            Cooper,J., Haydock,S., van Driessche,N., Cronin,A., Goodhead,I.,
            Muzny,D., Mourier,T., Pain,A., Lu,M., Harper,D., Lindsay,R.,
            Hauser,H., James,K., Quiles,M., Madan Babu,M., Saito,T.,
            Buchrieser,C., Wardroper,A., Felder,M., Thangavelu,M., Johnson,D.,
            Knights,A., Loulseged,H., Mungall,K., Oliver,K., Price,C.,
            Quail,M.A., Urushihara,H., Hernandez,J., Rabbinowitsch,E.,
            Steffen,D., Sanders,M., Ma,J., Kohara,Y., Sharp,S., Simmonds,M.,
            Spiegler,S., Tivey,A., Sugano,S., White,B., Walker,D., Woodward,J.,
            Winckler,T., Tanaka,Y., Shaulsky,G., Schleicher,M., Weinstock,G.,
            Rosenthal,A., Cox,E.C., Chisholm,R.L., Gibbs,R., Loomis,W.F.,
            Platzer,M., Kay,R.R., Williams,J., Dear,P.H., Noegel,A.A.,
            Barrell,B. and Kuspa,A.
  TITLE     The genome of the social amoeba Dictyostelium discoideum
  JOURNAL   Nature 435 (7038), 43-57 (2005)
   PUBMED   15875012
REFERENCE   2  (bases 1 to 900)
  AUTHORS   Eichinger,L., Pachebat,J.A., Gloeckner,G., Rajandream,M.-A.,
            Sucgang,R., Song,J., Cox,E.C., Tunggal,B., Szafranski,K.,
            Konfortov,B.A., Farbrother,P., Bankier,A.T., Lehmann,R., Hamlin,N.,
            Xu,Q., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G.,
            Saunders,D., Sodergren,E., Davis,P., Nie,X., Kerhornou,A.,
            Hemphill,L., Bason,N., Berriman,M., Desany,B., Churcher,C.,
            Cooper,J., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D.,
            Hall,N., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M.,
            Buchrieser,C., Wardroper,A., Thangavelu,M., Johnson,D., Knights,A.,
            Loulseged,H., Mungall,K., Price,C., Ma,J., Quail,M., Hernandez,J.,
            Rabbinowitsch,E., Steffen,D., Sanders,M., Weinstock,G., Sharp,S.,
            Just,E., Shaulsky,G., Simmonds,M., Tivey,A., White,B., Walker,D.,
            Woodward,J., Winckler,T., Schleicher,M., Rosenthal,A., Rivero,F.,
            Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R.,
            Williams,J., Dear,P.H., Noegel,A.A., Barrell,B. and Kuspa,A.
  CONSRTM   The Dictyostelium discoideum Sequencing Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2006) dictyBase, Center for Genetic Medicine,
            Northwestern University, 303 E Chicago Ave, Chicago, IL 60611, USA
REFERENCE   3  (bases 1 to 900)
  AUTHORS   Eichinger,L., Pachebat,J.A., Gloeckner,G., Rajandream,M.-A.,
            Sucgang,R., Song,J., Cox,E.C., Tunggal,B., Szafranski,K.,
            Konfortov,B.A., Farbrother,P., Bankier,A.T., Lehmann,R., Hamlin,N.,
            Xu,Q., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G.,
            Saunders,D., Sodergren,E., Davis,P., Nie,X., Kerhornou,A.,
            Hemphill,L., Bason,N., Berriman,M., Desany,B., Churcher,C.,
            Cooper,J., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D.,
            Hall,N., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M.,
            Buchrieser,C., Wardroper,A., Thangavelu,M., Johnson,D., Knights,A.,
            Loulseged,H., Mungall,K., Price,C., Ma,J., Quail,M., Hernandez,J.,
            Rabbinowitsch,E., Steffen,D., Sanders,M., Weinstock,G., Sharp,S.,
            Just,E., Shaulsky,G., Simmonds,M., Tivey,A., White,B., Walker,D.,
            Woodward,J., Winckler,T., Schleicher,M., Rosenthal,A., Rivero,F.,
            Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R.,
            Williams,J., Dear,P.H., Noegel,A.A., Barrell,B. and Kuspa,A.
  CONSRTM   The Dictyostelium discoideum Sequencing Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (08-OCT-2004) dictyBase, Center for Genetic Medicine,
            Northwestern University, 303 E Chicago Ave, Chicago, IL 60611, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_007089).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Dictyostelium discoideum AX4"
                     /mol_type="mRNA"
                     /strain="AX4"
                     /db_xref="taxon:352472"
                     /chromosome="3"
                     /note="terminal gaps represent complex repetitive
                     elements"
     gene            <1..>900
                     /locus_tag="DDB_G0280465"
                     /old_locus_tag="DDB_0205217"
                     /old_locus_tag="DDBDRAFT_0205217"
                     /db_xref="dictyBase:DDB_G0280465"
                     /db_xref="GeneID:8622572"
     CDS             1..900
                     /locus_tag="DDB_G0280465"
                     /old_locus_tag="DDB_0205217"
                     /old_locus_tag="DDBDRAFT_0205217"
                     /note="3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="XP_641191.1"
                     /db_xref="dictyBase:DDB0205217"
                     /db_xref="dictyBase:DDB_G0280465"
                     /db_xref="GeneID:8622572"
                     /translation="
MFLRKSIQTLSQRYYSTSNIKSVGVIGGGQMGSGIAQVLAQVAKRNVILVDLNKAVVEKSLININGFLQKSVAKGVITEEDRQSTLKRISFSDDLNSLKNVDFVIEAIVENTEIKCNLFKDLSKICKPEAILASNTSSISITQIASNTNNPQNVIGMHFMNPVPIMKLVEVIPSLQTNDETLKTTMELAAEMNKTTTLSKDMPGFIANRLLMPYINEAVQALHEGLGTREDIDTTMKLGCNMPMGPLTLADFIGLDTCYSIMNILHTQLGDKYKPSPLLKRYVEAGRLGKKVKHGFYTY"
     misc_feature    55..897
                     /locus_tag="DDB_G0280465"
                     /old_locus_tag="DDB_0205217"
                     /old_locus_tag="DDBDRAFT_0205217"
                     /note="3-hydroxybutyryl-CoA dehydrogenase; Validated;
                     Region: PRK05808"
                     /db_xref="CDD:180269"
ORIGIN      
atgtttttaagaaaatcaattcaaactttatctcaaagatattactccacttctaacatcaagtctgttggtgttattggtggtggtcaaatgggatctggtattgcccaagttttagcacaagttgcaaagagaaatgttatcctcgttgatcttaataaagctgttgttgaaaaatcattaatcaatatcaatggtttcttacaaaagagtgttgccaaaggtgtaatcactgaagaagatagacaaagtactttaaaaagaatttcattctctgatgatcttaattctttaaaaaatgttgattttgttattgaagcaattgttgaaaatacagaaattaaatgtaatttatttaaagatctttcaaaaatttgtaaaccagaagcaattttagcatcaaatacatcatcaatttcaatcacacaaattgcatcaaatactaataatccacaaaacgttattggtatgcattttatgaatccagtaccaattatgaaattggttgaagttattccaagtcttcaaactaatgatgagactcttaagactacaatggaattagctgctgaaatgaataaaactacaaccctctctaaagatatgccaggcttcattgctaatcgtttattaatgccatacattaatgaagcagttcaagcattacatgagggtttaggtactagagaagacattgataccaccatgaaattaggttgtaatatgccaatgggtccattaactttagctgatttcattggtttagatacttgttattcaattatgaatattcttcatactcaacttggtgataaatataaaccatcaccattattaaaaagatatgtcgaagctggtagattaggtaaaaaagttaaacatggtttctacacttattaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]