2024-05-03 18:13:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_634918 786 bp mRNA linear INV 29-JAN-2010 DEFINITION Dictyostelium discoideum AX4 hypothetical protein (DDB_G0285033) mRNA, complete cds. ACCESSION XM_634918 VERSION XM_634918.1 KEYWORDS RefSeq. SOURCE Dictyostelium discoideum AX4 ORGANISM Dictyostelium discoideum AX4 Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium. REFERENCE 1 (bases 1 to 786) AUTHORS Eichinger,L., Pachebat,J.A., Glockner,G., Rajandream,M.A., Sucgang,R., Berriman,M., Song,J., Olsen,R., Szafranski,K., Xu,Q., Tunggal,B., Kummerfeld,S., Madera,M., Konfortov,B.A., Rivero,F., Bankier,A.T., Lehmann,R., Hamlin,N., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G., Saunders,D., Sodergren,E., Davis,P., Kerhornou,A., Nie,X., Hall,N., Anjard,C., Hemphill,L., Bason,N., Farbrother,P., Desany,B., Just,E., Morio,T., Rost,R., Churcher,C., Cooper,J., Haydock,S., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D., Mourier,T., Pain,A., Lu,M., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M., Madan Babu,M., Saito,T., Buchrieser,C., Wardroper,A., Felder,M., Thangavelu,M., Johnson,D., Knights,A., Loulseged,H., Mungall,K., Oliver,K., Price,C., Quail,M.A., Urushihara,H., Hernandez,J., Rabbinowitsch,E., Steffen,D., Sanders,M., Ma,J., Kohara,Y., Sharp,S., Simmonds,M., Spiegler,S., Tivey,A., Sugano,S., White,B., Walker,D., Woodward,J., Winckler,T., Tanaka,Y., Shaulsky,G., Schleicher,M., Weinstock,G., Rosenthal,A., Cox,E.C., Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R., Williams,J., Dear,P.H., Noegel,A.A., Barrell,B. and Kuspa,A. TITLE The genome of the social amoeba Dictyostelium discoideum JOURNAL Nature 435 (7038), 43-57 (2005) PUBMED 15875012 REFERENCE 2 (bases 1 to 786) AUTHORS Eichinger,L., Pachebat,J.A., Gloeckner,G., Rajandream,M.-A., Sucgang,R., Song,J., Cox,E.C., Tunggal,B., Szafranski,K., Konfortov,B.A., Farbrother,P., Bankier,A.T., Lehmann,R., Hamlin,N., Xu,Q., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G., Saunders,D., Sodergren,E., Davis,P., Nie,X., Kerhornou,A., Hemphill,L., Bason,N., Berriman,M., Desany,B., Churcher,C., Cooper,J., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D., Hall,N., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M., Buchrieser,C., Wardroper,A., Thangavelu,M., Johnson,D., Knights,A., Loulseged,H., Mungall,K., Price,C., Ma,J., Quail,M., Hernandez,J., Rabbinowitsch,E., Steffen,D., Sanders,M., Weinstock,G., Sharp,S., Just,E., Shaulsky,G., Simmonds,M., Tivey,A., White,B., Walker,D., Woodward,J., Winckler,T., Schleicher,M., Rosenthal,A., Rivero,F., Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R., Williams,J., Dear,P.H., Noegel,A.A., Barrell,B. and Kuspa,A. CONSRTM The Dictyostelium discoideum Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (30-MAR-2006) dictyBase, Center for Genetic Medicine, Northwestern University, 303 E Chicago Ave, Chicago, IL 60611, USA REFERENCE 3 (bases 1 to 786) AUTHORS Eichinger,L., Pachebat,J.A., Gloeckner,G., Rajandream,M.-A., Sucgang,R., Song,J., Cox,E.C., Tunggal,B., Szafranski,K., Konfortov,B.A., Farbrother,P., Bankier,A.T., Lehmann,R., Hamlin,N., Xu,Q., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G., Saunders,D., Sodergren,E., Davis,P., Nie,X., Kerhornou,A., Hemphill,L., Bason,N., Berriman,M., Desany,B., Churcher,C., Cooper,J., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D., Hall,N., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M., Buchrieser,C., Wardroper,A., Thangavelu,M., Johnson,D., Knights,A., Loulseged,H., Mungall,K., Price,C., Ma,J., Quail,M., Hernandez,J., Rabbinowitsch,E., Steffen,D., Sanders,M., Weinstock,G., Sharp,S., Just,E., Shaulsky,G., Simmonds,M., Tivey,A., White,B., Walker,D., Woodward,J., Winckler,T., Schleicher,M., Rosenthal,A., Rivero,F., Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R., Williams,J., Dear,P.H., Noegel,A.A., Barrell,B. and Kuspa,A. CONSRTM The Dictyostelium discoideum Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (08-OCT-2004) dictyBase, Center for Genetic Medicine, Northwestern University, 303 E Chicago Ave, Chicago, IL 60611, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_007090). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..786 /organism="Dictyostelium discoideum AX4" /mol_type="mRNA" /strain="AX4" /db_xref="taxon:352472" /chromosome="4" /note="terminal gaps represent complex repetitive elements" gene <1..>786 /locus_tag="DDB_G0285033" /old_locus_tag="DDB_0186336" /old_locus_tag="DDBDRAFT_0186336" /db_xref="dictyBase:DDB_G0285033" /db_xref="GeneID:8624928" CDS 1..786 /locus_tag="DDB_G0285033" /old_locus_tag="DDB_0186336" /old_locus_tag="DDBDRAFT_0186336" /note="Q9RPT1 Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase)" /codon_start=1 /product="hypothetical protein" /protein_id="XP_640010.1" /db_xref="dictyBase:DDB0186336" /db_xref="dictyBase:DDB_G0285033" /db_xref="GeneID:8624928" /translation="
MVSNLFQVKDKIILVTGGGSGIGYGISLGFVKNGAKVYICSRDFEKCKKTAEELTKIGPGKCIAIKADLSKLSDIKNLFEEFSKYEQSLDCLVNNSGANWGEELEKYPDQAWDKVMNLNVKAVFNTSVAALPFLRKNATSQDPSRIINIGSIDGIRVPRLETYAYSASKAALHQLTRTLADRLAPEHILVNAIAAGPFMSKMTKQTFTQFEDLVKSSVATGRFGNNEDLEGLLVFLTSRASTYITGAIIPLEGGVLIKSNL"
misc_feature 13..762 /locus_tag="DDB_G0285033" /old_locus_tag="DDB_0186336" /old_locus_tag="DDBDRAFT_0186336" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl21454" /db_xref="CDD:451247" misc_feature order(49..51,55..60,64..66,121..129,283..291,445..453, 493..495,505..507,583..594) /locus_tag="DDB_G0285033" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(355..357,451..453,493..495,505..507) /locus_tag="DDB_G0285033" /note="active site" /db_xref="CDD:187535" ORIGIN
atggtatcaaatttatttcaagttaaagataaaattatattagttactggaggtggtagtggtataggatatggtatttcattaggatttgtaaagaatggtgcaaaagtttatatttgttcaagagattttgaaaaatgtaagaaaacagcagaagaattaacaaagattggaccaggaaaatgtatagcaattaaagcagatttatcgaaattgagtgatattaaaaatttatttgaagaattctcaaaatatgaacagtcattggattgtttagttaataattcaggtgcaaattggggtgaagaattagagaaatatccagaccaagcatgggataaagttatgaatttaaatgttaaagctgtttttaatacaagtgttgcagcattaccattcctaagaaagaatgcaacctcacaagatccttcaagaattattaatattggttcaatcgatggtattagagtaccacgtttagaaacttatgcttattcagcaagtaaagctgcccttcatcagttaactagaactttagccgatagattagcacctgaacatattctagtcaatgcaatcgctgctggtccttttatgtctaaaatgactaaacaaacttttacacaatttgaggatttggtcaaatctagtgttgccactggtagatttggtaataatgaagatcttgaaggtttattggtatttttaacttcaagagctagtacttatataactggtgctattattcctttggaaggtggtgttttaattaaatcaaatctttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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