2024-05-03 20:40:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_505684 1065 bp mRNA linear PLN 06-JUN-2017 DEFINITION Yarrowia lipolytica CLIB122 YALI0F20900p partial mRNA. ACCESSION XM_505684 VERSION XM_505684.1 DBLINK BioProject: PRJNA12414 BioSample: SAMEA3138171 KEYWORDS RefSeq. SOURCE Yarrowia lipolytica CLIB122 ORGANISM Yarrowia lipolytica CLIB122 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia. REFERENCE 1 (bases 1 to 1065) AUTHORS Dujon,B., Sherman,D., Fischer,G., Durrens,P., Casaregola,S., Lafontaine,I., De Montigny,J., Marck,C., Neuveglise,C., Talla,E., Goffard,N., Frangeul,L., Aigle,M., Anthouard,V., Babour,A., Barbe,V., Barnay,S., Blanchin,S., Beckerich,J.M., Beyne,E., Bleykasten,C., Boisrame,A., Boyer,J., Cattolico,L., Confanioleri,F., De Daruvar,A., Despons,L., Fabre,E., Fairhead,C., Ferry-Dumazet,H., Groppi,A., Hantraye,F., Hennequin,C., Jauniaux,N., Joyet,P., Kachouri,R., Kerrest,A., Koszul,R., Lemaire,M., Lesur,I., Ma,L., Muller,H., Nicaud,J.M., Nikolski,M., Oztas,S., Ozier-Kalogeropoulos,O., Pellenz,S., Potier,S., Richard,G.F., Straub,M.L., Suleau,A., Swennen,D., Tekaia,F., Wesolowski-Louvel,M., Westhof,E., Wirth,B., Zeniou-Meyer,M., Zivanovic,I., Bolotin-Fukuhara,M., Thierry,A., Bouchier,C., Caudron,B., Scarpelli,C., Gaillardin,C., Weissenbach,J., Wincker,P. and Souciet,J.L. TITLE Genome evolution in yeasts JOURNAL Nature 430 (6995), 35-44 (2004) PUBMED 15229592 REFERENCE 2 (bases 1 to 1065) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (05-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1065) AUTHORS Genoscope -,C.E.A. TITLE Direct Submission JOURNAL Submitted (09-SEP-2008) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_006072). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1065 /organism="Yarrowia lipolytica CLIB122" /mol_type="mRNA" /strain="CLIB122" /db_xref="taxon:284591" /chromosome="F" gene <1..>1065 /locus_tag="YALI0_F20900g" /old_locus_tag="YALI0F20900g" /db_xref="GeneID:2908936" CDS 1..1065 /locus_tag="YALI0_F20900g" /old_locus_tag="YALI0F20900g" /note="weakly similar to uniprot|Q9HDU6 Schizosaccharomyces pombe Probable 2-dehydropantoate 2- reductase (EC 1.1.1.169) (Ketopantoate reductase)" /codon_start=1 /product="YALI0F20900p" /protein_id="XP_505684.1" /db_xref="EnsemblGenomes-Gn:YALI0_F20900g" /db_xref="EnsemblGenomes-Tr:CAG78493" /db_xref="GeneID:2908936" /db_xref="GOA:Q6C0X8" /db_xref="InterPro:IPR003710" /db_xref="InterPro:IPR008927" /db_xref="InterPro:IPR013328" /db_xref="InterPro:IPR013332" /db_xref="InterPro:IPR013752" /db_xref="InterPro:IPR016040" /db_xref="UniProtKB/TrEMBL:Q6C0X8" /translation="
MSLPKVHILGAGSIGSLLAYNLAKAQVVAPVLMLRDAARQMDFKKRGSSVYFCGNDTPLSQFGIRHNYNTEPLLTGEGIKIETMTPDQIKEPLSHIIVTTKAQSTLSALFNYRDAIDCNTAMLFLQNGMGLKEQMDAKVWLNEDDKPHIFFGVTTHGAHRLPSPFYEYRHAGQGQIDMAVAPGTLLEENPFEEILQSSPTLGCQDTMPYPELLLKQSQKLVVNACVNPLTALMDCNNGQLLDSYATSTIINTVVFESSIILREYLLDTIGHQINPALISSALKPQRLNELINKVLQLTHDNSSSMREDVRNNRVTEIRYINKFLMDMGNKYKKPITANLMLYNLVNAQQDFNKF"
misc_feature 37..1041 /locus_tag="YALI0_F20900g" /old_locus_tag="YALI0F20900g" /note="2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522; cl42510" /db_xref="CDD:455855" ORIGIN
atgagtttaccgaaagttcacattctgggagcaggttcaatcggatctctgctggcgtacaacctggccaaggctcaagtcgtcgcccccgtgttgatgctgagagatgcagctcgacagatggacttcaagaagcgaggctcgtcagtctacttttgcggcaatgacacgcctctgtcgcagtttggtattcgccacaattacaacaccgagccattgctgactggggaaggcattaaaatcgagaccatgactccagaccagatcaaggagccactgagtcatattatcgtcacaacaaaggcccagagcacactcagcgcattattcaactacagggacgctatcgactgcaacactgctatgttgtttctgcaaaacggaatgggactgaaggaacaaatggacgccaaggtatggctgaatgaggacgataaacctcacatattctttggagtcactacacacggagcgcacagattgccgtcgccattctacgagtacagacacgccggccagggtcagattgacatggctgtggctcctggaaccttgttggaggagaatcccttcgaggagattctgcagtcctcacctactctgggatgccaggatactatgccatatcccgaattgctgctgaaacagagccagaagttggttgttaatgcgtgtgttaaccctctcactgccctcatggactgcaacaatggccagttgctggatagctacgcgactagcaccatcatcaatacagtggtgtttgagtccagcatcattctccgagaatatttgcttgataccattggacatcagattaaccctgctttgatttcttctgcgctcaagccccagagactgaatgagctcatcaacaaggtgttacagctgactcacgataactcatcctcgatgagagaagatgtgcggaacaatcgagtcacagagatcagatacatcaacaagtttcttatggatatgggtaacaagtacaagaaacccatcaccgccaacctcatgctatacaacctggtgaacgcacagcaggacttcaacaagttttaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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