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2024-05-03 20:40:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_505684               1065 bp    mRNA    linear   PLN 06-JUN-2017
DEFINITION  Yarrowia lipolytica CLIB122 YALI0F20900p partial mRNA.
ACCESSION   XM_505684
VERSION     XM_505684.1
DBLINK      BioProject: PRJNA12414
            BioSample: SAMEA3138171
KEYWORDS    RefSeq.
SOURCE      Yarrowia lipolytica CLIB122
  ORGANISM  Yarrowia lipolytica CLIB122
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Dujon,B., Sherman,D., Fischer,G., Durrens,P., Casaregola,S.,
            Lafontaine,I., De Montigny,J., Marck,C., Neuveglise,C., Talla,E.,
            Goffard,N., Frangeul,L., Aigle,M., Anthouard,V., Babour,A.,
            Barbe,V., Barnay,S., Blanchin,S., Beckerich,J.M., Beyne,E.,
            Bleykasten,C., Boisrame,A., Boyer,J., Cattolico,L.,
            Confanioleri,F., De Daruvar,A., Despons,L., Fabre,E., Fairhead,C.,
            Ferry-Dumazet,H., Groppi,A., Hantraye,F., Hennequin,C.,
            Jauniaux,N., Joyet,P., Kachouri,R., Kerrest,A., Koszul,R.,
            Lemaire,M., Lesur,I., Ma,L., Muller,H., Nicaud,J.M., Nikolski,M.,
            Oztas,S., Ozier-Kalogeropoulos,O., Pellenz,S., Potier,S.,
            Richard,G.F., Straub,M.L., Suleau,A., Swennen,D., Tekaia,F.,
            Wesolowski-Louvel,M., Westhof,E., Wirth,B., Zeniou-Meyer,M.,
            Zivanovic,I., Bolotin-Fukuhara,M., Thierry,A., Bouchier,C.,
            Caudron,B., Scarpelli,C., Gaillardin,C., Weissenbach,J., Wincker,P.
            and Souciet,J.L.
  TITLE     Genome evolution in yeasts
  JOURNAL   Nature 430 (6995), 35-44 (2004)
   PUBMED   15229592
REFERENCE   2  (bases 1 to 1065)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1065)
  AUTHORS   Genoscope -,C.E.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2008) Genoscope - Centre National de Sequencage :
            BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
            - Web : www.genoscope.cns.fr)
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_006072).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Yarrowia lipolytica CLIB122"
                     /mol_type="mRNA"
                     /strain="CLIB122"
                     /db_xref="taxon:284591"
                     /chromosome="F"
     gene            <1..>1065
                     /locus_tag="YALI0_F20900g"
                     /old_locus_tag="YALI0F20900g"
                     /db_xref="GeneID:2908936"
     CDS             1..1065
                     /locus_tag="YALI0_F20900g"
                     /old_locus_tag="YALI0F20900g"
                     /note="weakly similar to uniprot|Q9HDU6
                     Schizosaccharomyces pombe Probable 2-dehydropantoate 2-
                     reductase (EC 1.1.1.169) (Ketopantoate reductase)"
                     /codon_start=1
                     /product="YALI0F20900p"
                     /protein_id="XP_505684.1"
                     /db_xref="EnsemblGenomes-Gn:YALI0_F20900g"
                     /db_xref="EnsemblGenomes-Tr:CAG78493"
                     /db_xref="GeneID:2908936"
                     /db_xref="GOA:Q6C0X8"
                     /db_xref="InterPro:IPR003710"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR013328"
                     /db_xref="InterPro:IPR013332"
                     /db_xref="InterPro:IPR013752"
                     /db_xref="InterPro:IPR016040"
                     /db_xref="UniProtKB/TrEMBL:Q6C0X8"
                     /translation="
MSLPKVHILGAGSIGSLLAYNLAKAQVVAPVLMLRDAARQMDFKKRGSSVYFCGNDTPLSQFGIRHNYNTEPLLTGEGIKIETMTPDQIKEPLSHIIVTTKAQSTLSALFNYRDAIDCNTAMLFLQNGMGLKEQMDAKVWLNEDDKPHIFFGVTTHGAHRLPSPFYEYRHAGQGQIDMAVAPGTLLEENPFEEILQSSPTLGCQDTMPYPELLLKQSQKLVVNACVNPLTALMDCNNGQLLDSYATSTIINTVVFESSIILREYLLDTIGHQINPALISSALKPQRLNELINKVLQLTHDNSSSMREDVRNNRVTEIRYINKFLMDMGNKYKKPITANLMLYNLVNAQQDFNKF"
     misc_feature    37..1041
                     /locus_tag="YALI0_F20900g"
                     /old_locus_tag="YALI0F20900g"
                     /note="2-dehydropantoate 2-reductase; Reviewed; Region:
                     PRK06522; cl42510"
                     /db_xref="CDD:455855"
ORIGIN      
atgagtttaccgaaagttcacattctgggagcaggttcaatcggatctctgctggcgtacaacctggccaaggctcaagtcgtcgcccccgtgttgatgctgagagatgcagctcgacagatggacttcaagaagcgaggctcgtcagtctacttttgcggcaatgacacgcctctgtcgcagtttggtattcgccacaattacaacaccgagccattgctgactggggaaggcattaaaatcgagaccatgactccagaccagatcaaggagccactgagtcatattatcgtcacaacaaaggcccagagcacactcagcgcattattcaactacagggacgctatcgactgcaacactgctatgttgtttctgcaaaacggaatgggactgaaggaacaaatggacgccaaggtatggctgaatgaggacgataaacctcacatattctttggagtcactacacacggagcgcacagattgccgtcgccattctacgagtacagacacgccggccagggtcagattgacatggctgtggctcctggaaccttgttggaggagaatcccttcgaggagattctgcagtcctcacctactctgggatgccaggatactatgccatatcccgaattgctgctgaaacagagccagaagttggttgttaatgcgtgtgttaaccctctcactgccctcatggactgcaacaatggccagttgctggatagctacgcgactagcaccatcatcaatacagtggtgtttgagtccagcatcattctccgagaatatttgcttgataccattggacatcagattaaccctgctttgatttcttctgcgctcaagccccagagactgaatgagctcatcaacaaggtgttacagctgactcacgataactcatcctcgatgagagaagatgtgcggaacaatcgagtcacagagatcagatacatcaacaagtttcttatggatatgggtaacaagtacaagaaacccatcaccgccaacctcatgctatacaacctggtgaacgcacagcaggacttcaacaagttttaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]