GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-03 22:20:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_461982                744 bp    mRNA    linear   PLN 20-APR-2018
DEFINITION  Debaryomyces hansenii CBS767 DEHA2G10010p (DEHA2G10010g), partial
            mRNA.
ACCESSION   XM_461982
VERSION     XM_461982.1
DBLINK      BioProject: PRJNA12410
            BioSample: SAMEA3138183
KEYWORDS    RefSeq.
SOURCE      Debaryomyces hansenii CBS767
  ORGANISM  Debaryomyces hansenii CBS767
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Debaryomycetaceae;
            Debaryomyces.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Dujon,B., Sherman,D., Fischer,G., Durrens,P., Casaregola,S.,
            Lafontaine,I., De Montigny,J., Marck,C., Neuveglise,C., Talla,E.,
            Goffard,N., Frangeul,L., Aigle,M., Anthouard,V., Babour,A.,
            Barbe,V., Barnay,S., Blanchin,S., Beckerich,J.M., Beyne,E.,
            Bleykasten,C., Boisrame,A., Boyer,J., Cattolico,L.,
            Confanioleri,F., De Daruvar,A., Despons,L., Fabre,E., Fairhead,C.,
            Ferry-Dumazet,H., Groppi,A., Hantraye,F., Hennequin,C.,
            Jauniaux,N., Joyet,P., Kachouri,R., Kerrest,A., Koszul,R.,
            Lemaire,M., Lesur,I., Ma,L., Muller,H., Nicaud,J.M., Nikolski,M.,
            Oztas,S., Ozier-Kalogeropoulos,O., Pellenz,S., Potier,S.,
            Richard,G.F., Straub,M.L., Suleau,A., Swennen,D., Tekaia,F.,
            Wesolowski-Louvel,M., Westhof,E., Wirth,B., Zeniou-Meyer,M.,
            Zivanovic,I., Bolotin-Fukuhara,M., Thierry,A., Bouchier,C.,
            Caudron,B., Scarpelli,C., Gaillardin,C., Weissenbach,J., Wincker,P.
            and Souciet,J.L.
  TITLE     Genome evolution in yeasts
  JOURNAL   Nature 430 (6995), 35-44 (2004)
   PUBMED   15229592
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Casaregola,S., Val,M.E., Neuveglise,C., Talla,E., Martin,T.,
            Durrens,P., Barbe,V., Bleykasten,C., Bon,E., Despons,L.,
            Fritsch,E., Groppi,A., Iragne,F., Jauniaux,N., Leh,V., de
            Montigny,J., Pottier,S., Straub,M.L., Wirth,B., Wincker,P.,
            Sherman,D.J., Gaillardin,C. and Souciet,J.L.
  TITLE     The second release of the complete genome of Debaryomyces hansenii
            type strain CBS767
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 744)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   4  (bases 1 to 744)
  AUTHORS   Genoscope -,C.E.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2008) Genoscope - Centre National de Sequencage :
            BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
            - Web : www.genoscope.cns.fr)
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_006049).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Debaryomyces hansenii CBS767"
                     /mol_type="mRNA"
                     /strain="CBS767"
                     /type_material="culture from type material of
                     Saccharomyces hansenii"
                     /db_xref="taxon:284592"
                     /chromosome="G"
     gene            <1..>744
                     /locus_tag="DEHA2G10010g"
                     /db_xref="GeneID:2904875"
     CDS             1..744
                     /locus_tag="DEHA2G10010g"
                     /note="uniprot|Q6BII9 Debaryomyces hansenii RIB7
                     5-amino-6-(5- phosphoribosylamino) uracil reductase (EC
                     1.1.1.193)"
                     /codon_start=1
                     /transl_table=12
                     /product="DEHA2G10010p"
                     /protein_id="XP_461982.1"
                     /db_xref="GeneID:2904875"
                     /db_xref="GOA:Q6BII9"
                     /db_xref="InterPro:IPR002734"
                     /db_xref="InterPro:IPR011549"
                     /db_xref="InterPro:IPR024072"
                     /translation="
MSLLPLTPSLRPFLEEYLPRPCSNRPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIMVGIGTVLADDPKLNCRFEAEDGNISTPRPIILDPTGKWAYHKSQLRSVCDNNKGLAPFILIDETVTPRNEDVEVLDKQDGAFVRLPLLRNADKVGNWNIILKKLFQLGIKSIMVEGGASIINDLLVYSKIIDSLIITIGPVFLGKDGVEVSPSGHAGLIDVKWWQGIQDSVLCARLT"
     misc_feature    73..738
                     /locus_tag="DEHA2G10010g"
                     /note="Dihydrofolate reductase (DHFR). Reduces
                     7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
                     as a cofactor. This is an essential step in the
                     biosynthesis of deoxythymidine phosphate since
                     5,6,7,8-tetrahydrofolate is required to regenerate 5;
                     Region: DHFR; cl17279"
                     /db_xref="CDD:450177"
ORIGIN      
atgtcccttttgccgctcacaccatcattgaggccatttctcgaggagtacctcccaaggccatgctccaacagaccgtttgtaacgcttacatatgcacagtcgttagattctcgcatagctgctaaacctggtgaacaaaccaaaatatcacaccttgaaactaaaacaatgacacattatattcgttcgaagcatgacggtataatggtgggaataggtactgtgttagccgatgatccaaaattaaattgtcgttttgaagctgaagatgggaatatttctacaccgagacccattatcttagatcctaccggaaaatgggcatatcataaatcccaattgcgttctgtatgtgataataataaaggattagcccctttcatcctaattgatgaaaccgtgacaccgagaaatgaagatgttgaagttctagataagcaggatggtgcatttgtcaggcttcccttacttcgcaatgcggacaaggttgggaattggaatattatattgaaaaaattgtttcaattgggtatcaaatctatcatggttgaaggaggtgcaagtataatcaatgacttgttggtttatagtaagattattgatagtttgattattacaataggccctgtattcttgggtaaagatggagttgaagtaagcccttcgggacatgctggcttaattgacgtcaaatggtggcaaggaatacaggatagcgtattatgcgccagacttacatag
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]